CB294018

Overview
NameCB294018
Unique NameCB294018
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length663
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB294018_ssr24 microsatellite CB294018_ssr24:24..39. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig8865 contig Csv1_Contig8865:7..668. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB294018 vs. ExPASy Swiss-Prot
Match: CYC_NEUCR (Cytochrome c OS=Neurospora crassa GN=cyc-1 PE=1 SV=2)

HSP 1 Score: 141.739 bits (356), Expect = 3.142e-33
Identity = 60/103 (58.25%), Postives = 83/103 (80.58%), Query Frame = 2
Query:  110 GNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQSTA 418
            G++K G  +FKT+CAQCHT+E+G G+K GP L+GLFGR++G+  GY+Y+ ANK   + W+E TL++YL NPKKYIPGTKM F GLKK +DR D+I ++K++TA
Sbjct:    6 GDSKKGANLFKTRCAQCHTLEEGGGNKIGPALHGLFGRKTGSVDGYAYTDANKQKGITWDENTLFEYLENPKKYIPGTKMAFGGLKKDKDRNDIITFMKEATA 108          
BLAST of CB294018 vs. ExPASy Swiss-Prot
Match: CYC_ROSNE (Cytochrome c OS=Rosellinia necatrix GN=CYTC PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 4.104e-33
Identity = 63/103 (61.17%), Postives = 81/103 (78.64%), Query Frame = 2
Query:  110 GNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQSTA 418
            G+ K GEK+F T+CAQCHT+++G G+K GP L+GLFGR++G+  GY+Y+ ANK   + W E TL+ YL NPKKYIPGTKM F GLKK +DR DLI+YLK+ TA
Sbjct:    6 GDLKKGEKLFTTRCAQCHTLKEGEGNKVGPALHGLFGRKTGSVEGYAYTDANKQKGIEWTEDTLFTYLENPKKYIPGTKMAFGGLKKDKDRNDLISYLKKETA 108          
BLAST of CB294018 vs. ExPASy Swiss-Prot
Match: CYC_GIBZE (Cytochrome c OS=Gibberella zeae GN=CYC1 PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 4.104e-33
Identity = 64/102 (62.75%), Postives = 79/102 (77.45%), Query Frame = 2
Query:  110 GNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQST 415
            G+ K G  +FKT+CAQCHTVEK  G+K GP L+GL+GR++G+  GYSY+ ANK   + W + TL++YL NPKKYIPGTKM F GLKK +DR DLIAYLK ST
Sbjct:    7 GDIKKGANLFKTRCAQCHTVEKDGGNKIGPALHGLWGRKTGSVEGYSYTDANKQKGIEWNDDTLFEYLENPKKYIPGTKMAFGGLKKAKDRNDLIAYLKDST 108          
BLAST of CB294018 vs. ExPASy Swiss-Prot
Match: CYC_EISFO (Cytochrome c OS=Eisenia foetida PE=1 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 4.104e-33
Identity = 62/104 (59.62%), Postives = 80/104 (76.92%), Query Frame = 2
Query:  104 PPGNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQST 415
            P G+ + G+ IFK +CAQCHTV+KG  HK GPNL+G+FGR +G   G++Y+ ANK+  + W + TLY+YL NPKKYIPGTKMVF GLK  + RA+LIAYL+Q T
Sbjct:    4 PAGDVEKGKTIFKQRCAQCHTVDKGGPHKTGPNLHGIFGRATGQAAGFAYTDANKSKGITWTKDTLYEYLENPKKYIPGTKMVFAGLKNEKQRANLIAYLEQET 107          
BLAST of CB294018 vs. ExPASy Swiss-Prot
Match: CYC_CURLU (Cytochrome c OS=Curvularia lunata PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 4.104e-33
Identity = 62/102 (60.78%), Postives = 79/102 (77.45%), Query Frame = 2
Query:  110 GNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQST 415
            G+AK G  +FKT+CAQCHT++ G G+K GP L+GLFGR++G+  GYSY+ ANK   + W   TL++YL NPKKYIPGTKM F GLKKP+DR DLI +L+Q T
Sbjct:    6 GDAKKGANLFKTRCAQCHTLKAGEGNKIGPELHGLFGRKTGSVAGYSYTDANKQKGIEWNHDTLFEYLENPKKYIPGTKMAFGGLKKPKDRNDLITFLEQET 107          
BLAST of CB294018 vs. ExPASy Swiss-Prot
Match: CYC1_ARATH (Cytochrome c OS=Arabidopsis thaliana GN=CC-1 PE=2 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 4.104e-33
Identity = 61/102 (59.80%), Postives = 81/102 (79.41%), Query Frame = 2
Query:  110 GNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQST 415
            G+AK G  +FKT+CAQCHT++ G G+K GP L+GLFGR++G+  GYSY+ ANK   + W++ TL++YL NPKKYIPGTKM F GLKKP+DR DLI +L++ T
Sbjct:   10 GDAKKGANLFKTRCAQCHTLKAGEGNKIGPELHGLFGRKTGSVAGYSYTDANKQKGIEWKDDTLFEYLENPKKYIPGTKMAFGGLKKPKDRNDLITFLEEET 111          
BLAST of CB294018 vs. ExPASy Swiss-Prot
Match: CYC_PICST (Cytochrome c OS=Pichia stipitis GN=CYC1 PE=3 SV=3)

HSP 1 Score: 140.969 bits (354), Expect = 5.360e-33
Identity = 63/102 (61.76%), Postives = 76/102 (74.51%), Query Frame = 2
Query:  110 GNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQST 415
            G+ K G  +FKT+C QCHTVE+G  HK GPNL+G+ GR+SG   GYSY+ ANK   V W E+T+ DYL NPKKYIPGTKM F GLKKP+DR DL+ YL  +T
Sbjct:    8 GSEKKGATLFKTRCLQCHTVEEGGPHKVGPNLHGIMGRKSGQAVGYSYTDANKKKGVEWSEQTMSDYLENPKKYIPGTKMAFGGLKKPKDRNDLVTYLASAT 109          
BLAST of CB294018 vs. ExPASy Swiss-Prot
Match: CYC_SQUSU (Cytochrome c OS=Squalus sucklii GN=cyc PE=1 SV=2)

HSP 1 Score: 140.198 bits (352), Expect = 9.143e-33
Identity = 62/103 (60.19%), Postives = 80/103 (77.67%), Query Frame = 2
Query:  110 GNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQSTA 418
            G+ + G+K+F  KCAQCHTVE G  HK GPNL+GLFGR++G   G+SY+ ANK+  + W+++TL  YL NPKKYIPGTKM+F GLKK  +R DLIAYLK++ A
Sbjct:    2 GDVEKGKKVFVQKCAQCHTVENGGKHKTGPNLSGLFGRKTGQAQGFSYTDANKSKGITWQQETLRIYLENPKKYIPGTKMIFAGLKKKSERQDLIAYLKKTAA 104          
BLAST of CB294018 vs. ExPASy Swiss-Prot
Match: CYC_PICPA (Cytochrome c OS=Pichia pastoris GN=CYC1 PE=3 SV=3)

HSP 1 Score: 139.813 bits (351), Expect = 1.194e-32
Identity = 64/102 (62.75%), Postives = 75/102 (73.53%), Query Frame = 2
Query:  110 GNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQST 415
            G+ K G  +FKT+C QCHTVE G  HK GPNL+G+FGR+SG   GYSY+ ANK   V W E+T+ DYL NPKKYIPGTKM F GLKK +DR DLI YL  +T
Sbjct:    8 GSEKKGATLFKTRCLQCHTVEAGGPHKVGPNLHGVFGRKSGLAEGYSYTDANKRKGVEWSEQTMSDYLENPKKYIPGTKMAFGGLKKAKDRNDLITYLASAT 109          
BLAST of CB294018 vs. ExPASy Swiss-Prot
Match: CYC_OTOGA (Cytochrome c OS=Otolemur garnettii GN=CYCS PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.194e-32
Identity = 63/97 (64.95%), Postives = 77/97 (79.38%), Query Frame = 2
Query:  125 GEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQST 415
            G+KIF  KCAQCHTV+KG  HK GPNL+GLFGR++G   G+SY+ ANKN  + W E TL +YL NPKKYIPGTKM+F G+KK  +RADLI YLK++T
Sbjct:    7 GKKIFVQKCAQCHTVDKGGKHKTGPNLHGLFGRKTGQAAGFSYTDANKNKGITWGEDTLMEYLENPKKYIPGTKMIFAGVKKKGERADLIDYLKKAT 103          
The following BLAST results are available for this feature:
BLAST of CB294018 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 174
Match NameE-valueIdentityDescription
CYC_NEUCR3.142e-3358.25Cytochrome c OS=Neurospora crassa GN=cyc-1 PE=1 SV... [more]
CYC_ROSNE4.104e-3361.17Cytochrome c OS=Rosellinia necatrix GN=CYTC PE=3 S... [more]
CYC_GIBZE4.104e-3362.75Cytochrome c OS=Gibberella zeae GN=CYC1 PE=3 SV=1[more]
CYC_EISFO4.104e-3359.62Cytochrome c OS=Eisenia foetida PE=1 SV=1[more]
CYC_CURLU4.104e-3360.78Cytochrome c OS=Curvularia lunata PE=3 SV=1[more]
CYC1_ARATH4.104e-3359.80Cytochrome c OS=Arabidopsis thaliana GN=CC-1 PE=2 ... [more]
CYC_PICST5.360e-3361.76Cytochrome c OS=Pichia stipitis GN=CYC1 PE=3 SV=3[more]
CYC_SQUSU9.143e-3360.19Cytochrome c OS=Squalus sucklii GN=cyc PE=1 SV=2[more]
CYC_PICPA1.194e-3262.75Cytochrome c OS=Pichia pastoris GN=CYC1 PE=3 SV=3[more]
CYC_OTOGA1.194e-3264.95Cytochrome c OS=Otolemur garnettii GN=CYCS PE=3 SV... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_06dd03_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06dd03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB294018 ID=CB294018; Name=CB294018; organism=Citrus sinensis; type=EST; length=663bp
GCACTAGGAGAACGCAATCACAGCTCTCTCTCTCTCTCTGCGCTCTTCTT
TCTCTCTTTGGATATTTCAAAACACCACAATAATGGCGTCGTTTGATGAG
GCACCTCCCGGCAATGCAAAGGCCGGAGAGAAGATCTTCAAGACCAAGTG
CGCTCAGTGCCACACCGTCGAGAAAGGCGCCGGTCACAAACAAGGTCCTA
ATTTGAACGGATTGTTTGGAAGGCAATCGGGGACTACACCTGGGTACTCA
TACTCTGCGGCTAACAAGAACATGGCTGTGAATTGGGAGGAAAAGACTTT
GTATGATTACTTGCTCAACCCTAAGAAGTACATTCCTGGAACAAAGATGG
TATTCCCTGGATTGAAGAAGCCTCAGGATCGTGCTGACCTTATTGCATAT
TTGAAACAATCTACTGCATAAGAACTTGCCGATAGTCAGTTTACCTATTC
CATTTTGCAGTTGTTGAAGATTGTTTTGCGGTGCGGATATAGTACTGTTT
TTTACCAATAAATTTTAAACATTTAAGGTTCAGCAATGTTCTTTGTAACT
TGAGCATTGCTAATTTGAGAAAAGGTTGCTGTCATTGGCAAACATGATAT
TCAATTGAATTTCCTGGTTATAATCATATTTCATGAATTTTGGGTGAACC
CAAAAAAAACAAA
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