CB294018

Overview
NameCB294018
Unique NameCB294018
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length663
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB294018_ssr24 microsatellite CB294018_ssr24:24..39. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig8865 contig Csv1_Contig8865:7..668. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB294018 vs. ExPASy Swiss-Prot
Match: CYC_ASTRU (Cytochrome c OS=Asterias rubens PE=1 SV=2)

HSP 1 Score: 139.813 bits (351), Expect = 1.194e-32
Identity = 61/102 (59.80%), Postives = 79/102 (77.45%), Query Frame = 2
Query:  110 GNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQST 415
            G  + G+KIF  +CAQCHTVEK   HK GPNLNG+ GR++G   G+SY+ AN+N  + W+ +TL++YL NPKKYIPGTKMVF GLKK ++R DLIAYL+ +T
Sbjct:    2 GQVEKGKKIFVQRCAQCHTVEKAGKHKTGPNLNGILGRKTGQAAGFSYTDANRNKGITWKNETLFEYLENPKKYIPGTKMVFAGLKKQKERQDLIAYLEAAT 103          
BLAST of CB294018 vs. ExPASy Swiss-Prot
Match: CYC_SAISC (Cytochrome c OS=Saimiri sciureus GN=CYCS PE=3 SV=3)

HSP 1 Score: 139.428 bits (350), Expect = 1.560e-32
Identity = 62/102 (60.78%), Postives = 80/102 (78.43%), Query Frame = 2
Query:  110 GNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQST 415
            G+ + G++IF  KC+QCHTVEKG  HK GPNL+GLFGR++G   G++Y+ ANKN  + W E TL +YL NPKKYIPGTKM+F G+KK  +R DLIAYLK++T
Sbjct:    2 GDVEKGKRIFIQKCSQCHTVEKGGKHKTGPNLHGLFGRKTGQAAGFTYTEANKNKGIIWGEDTLMEYLENPKKYIPGTKMIFVGIKKKGEREDLIAYLKKAT 103          
BLAST of CB294018 vs. ExPASy Swiss-Prot
Match: CYC_HELAS (Cytochrome c OS=Helix aspersa PE=1 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.560e-32
Identity = 61/102 (59.80%), Postives = 77/102 (75.49%), Query Frame = 2
Query:  110 GNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQST 415
            G A+ G+KIF  KC QCHTVE G  HK GPNL+GLFGR+ G  PG++Y+ ANK   + W+ +TL++YL NPKKYIPGTKMVF GLK   +R  LIAYL+++T
Sbjct:    1 GZAZKGKKIFTQKCLQCHTVEAGGKHKTGPNLSGLFGRKQGQAPGFAYTDANKGKGITWKNQTLFEYLENPKKYIPGTKMVFAGLKBZTERVHLIAYLZZAT 102          
BLAST of CB294018 vs. ExPASy Swiss-Prot
Match: CYC_PACTA (Cytochrome c OS=Pachysolen tannophilus GN=CYC1 PE=3 SV=3)

HSP 1 Score: 138.658 bits (348), Expect = 2.660e-32
Identity = 63/102 (61.76%), Postives = 73/102 (71.57%), Query Frame = 2
Query:  110 GNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQST 415
            G+AK G  +FKT+C QCHT E G  HK GPNLNG+FGR SG   GYSY+ ANK     WE +T+ DYL NPKKYIPGTKM F GLKK +DR DL+ YL  +T
Sbjct:    8 GSAKKGATLFKTRCLQCHTTEAGGAHKVGPNLNGVFGRHSGQAEGYSYTDANKQKGALWEAQTMSDYLENPKKYIPGTKMAFGGLKKAKDRNDLVTYLLSAT 109          
BLAST of CB294018 vs. ExPASy Swiss-Prot
Match: CYC_DANRE (Cytochrome c OS=Danio rerio GN=cyc PE=2 SV=3)

HSP 1 Score: 138.658 bits (348), Expect = 2.660e-32
Identity = 63/103 (61.17%), Postives = 79/103 (76.70%), Query Frame = 2
Query:  110 GNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQSTA 418
            G+ + G+K+F  KCAQCHTVE G  HK GPNL GLFGR++G   G+SY+ ANK+  + W E TL +YL NPKKYIPGTKM+F G+KK  +RADLIAYLK +T+
Sbjct:    2 GDVEKGKKVFVQKCAQCHTVENGGKHKVGPNLWGLFGRKTGQAEGFSYTDANKSKGIVWGEDTLMEYLENPKKYIPGTKMIFAGIKKKGERADLIAYLKSATS 104          
BLAST of CB294018 vs. ExPASy Swiss-Prot
Match: CYC_USTSP (Cytochrome c OS=Ustilago sphaerogena PE=1 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 3.474e-32
Identity = 63/102 (61.76%), Postives = 78/102 (76.47%), Query Frame = 2
Query:  110 GNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQST 415
            G+AK G +IFKT+CAQCHT+  G  +K GPNL+GLFGR+SGT  G+SY+ ANK     WEE+T  +YL NPKKYIPGTKM F GLKK +DR DL+ YL++ T
Sbjct:    5 GDAKKGARIFKTRCAQCHTLGAGEPNKVGPNLHGLFGRKSGTVEGFSYTDANKKAGQVWEEETFLEYLENPKKYIPGTKMAFGGLKKEKDRNDLVTYLREET 106          
BLAST of CB294018 vs. ExPASy Swiss-Prot
Match: CYCB_TAKRU (Cytochrome c-b OS=Takifugu rubripes GN=cyc-B PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 4.537e-32
Identity = 64/103 (62.14%), Postives = 78/103 (75.73%), Query Frame = 2
Query:  110 GNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQSTA 418
            G+   G+K F  KCAQCHTVE+G  HK GPNL GLFGR++G   G+SY+ ANK+  + W E+TL  YL NPKKYIPGTKM+F G+KK  +RADLIAYLK ST+
Sbjct:    3 GDIAKGKKAFVQKCAQCHTVEQGGKHKTGPNLWGLFGRKTGQAEGFSYTDANKSKGIIWSEETLMVYLENPKKYIPGTKMIFAGIKKKTERADLIAYLKSSTS 105          
BLAST of CB294018 vs. ExPASy Swiss-Prot
Match: CYC1_YEAST (Cytochrome c iso-1 OS=Saccharomyces cerevisiae GN=CYC1 PE=1 SV=2)

HSP 1 Score: 137.887 bits (346), Expect = 4.537e-32
Identity = 64/105 (60.95%), Postives = 76/105 (72.38%), Query Frame = 2
Query:   98 EAPPGNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQS 412
            E   G+AK G  +FKT+C QCHTVEKG  HK GPNL+G+FGR SG   GYSY+ AN    V W+E  + +YL NPKKYIPGTKM F GLKK +DR DLI YLK++
Sbjct:    3 EFKAGSAKKGATLFKTRCLQCHTVEKGGPHKVGPNLHGIFGRHSGQAEGYSYTDANIKKNVLWDENNMSEYLTNPKKYIPGTKMAFGGLKKEKDRNDLITYLKKA 107          
BLAST of CB294018 vs. ExPASy Swiss-Prot
Match: CYC_STELP (Cytochrome c OS=Stellaria longipes PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 5.926e-32
Identity = 61/102 (59.80%), Postives = 79/102 (77.45%), Query Frame = 2
Query:  110 GNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQST 415
            G+AK G  +FKT+CAQCHT+ +G G+K GPNL+GLFGR +G+  G+SY+ ANK   + W + TL++YL NPKKYIPGTKM F GLKK +DR DLI +L+ ST
Sbjct:    6 GDAKKGANLFKTRCAQCHTLGEGEGNKIGPNLHGLFGRHTGSVEGFSYTDANKAKGIEWNKDTLFEYLENPKKYIPGTKMAFGGLKKDKDRNDLITFLQDST 107          
BLAST of CB294018 vs. ExPASy Swiss-Prot
Match: CYC_ISSOR (Cytochrome c OS=Issatchenkia orientalis GN=CYC1 PE=1 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 5.926e-32
Identity = 61/102 (59.80%), Postives = 75/102 (73.53%), Query Frame = 2
Query:  110 GNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQST 415
            G+AK G  +FKT+CAQCHT+E G  HK GPNL+G+F R SG   GYSY+ ANK   V W E T+ DYL NPKKYIPGTKM F GLKK +DR DL+ Y+ +++
Sbjct:    7 GSAKKGATLFKTRCAQCHTIEAGGPHKVGPNLHGIFSRHSGQAEGYSYTDANKRAGVEWAEPTMSDYLENPKKYIPGTKMAFGGLKKAKDRNDLVTYMLEAS 108          
The following BLAST results are available for this feature:
BLAST of CB294018 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 174
Match NameE-valueIdentityDescription
CYC_ASTRU1.194e-3259.80Cytochrome c OS=Asterias rubens PE=1 SV=2[more]
CYC_SAISC1.560e-3260.78Cytochrome c OS=Saimiri sciureus GN=CYCS PE=3 SV=3[more]
CYC_HELAS1.560e-3259.80Cytochrome c OS=Helix aspersa PE=1 SV=1[more]
CYC_PACTA2.660e-3261.76Cytochrome c OS=Pachysolen tannophilus GN=CYC1 PE=... [more]
CYC_DANRE2.660e-3261.17Cytochrome c OS=Danio rerio GN=cyc PE=2 SV=3[more]
CYC_USTSP3.474e-3261.76Cytochrome c OS=Ustilago sphaerogena PE=1 SV=1[more]
CYCB_TAKRU4.537e-3262.14Cytochrome c-b OS=Takifugu rubripes GN=cyc-B PE=3 ... [more]
CYC1_YEAST4.537e-3260.95Cytochrome c iso-1 OS=Saccharomyces cerevisiae GN=... [more]
CYC_STELP5.926e-3259.80Cytochrome c OS=Stellaria longipes PE=3 SV=1[more]
CYC_ISSOR5.926e-3259.80Cytochrome c OS=Issatchenkia orientalis GN=CYC1 PE... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_06dd03_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06dd03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB294018 ID=CB294018; Name=CB294018; organism=Citrus sinensis; type=EST; length=663bp
GCACTAGGAGAACGCAATCACAGCTCTCTCTCTCTCTCTGCGCTCTTCTT
TCTCTCTTTGGATATTTCAAAACACCACAATAATGGCGTCGTTTGATGAG
GCACCTCCCGGCAATGCAAAGGCCGGAGAGAAGATCTTCAAGACCAAGTG
CGCTCAGTGCCACACCGTCGAGAAAGGCGCCGGTCACAAACAAGGTCCTA
ATTTGAACGGATTGTTTGGAAGGCAATCGGGGACTACACCTGGGTACTCA
TACTCTGCGGCTAACAAGAACATGGCTGTGAATTGGGAGGAAAAGACTTT
GTATGATTACTTGCTCAACCCTAAGAAGTACATTCCTGGAACAAAGATGG
TATTCCCTGGATTGAAGAAGCCTCAGGATCGTGCTGACCTTATTGCATAT
TTGAAACAATCTACTGCATAAGAACTTGCCGATAGTCAGTTTACCTATTC
CATTTTGCAGTTGTTGAAGATTGTTTTGCGGTGCGGATATAGTACTGTTT
TTTACCAATAAATTTTAAACATTTAAGGTTCAGCAATGTTCTTTGTAACT
TGAGCATTGCTAATTTGAGAAAAGGTTGCTGTCATTGGCAAACATGATAT
TCAATTGAATTTCCTGGTTATAATCATATTTCATGAATTTTGGGTGAACC
CAAAAAAAACAAA
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