CB294018

Overview
NameCB294018
Unique NameCB294018
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length663
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB294018_ssr24 microsatellite CB294018_ssr24:24..39. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig8865 contig Csv1_Contig8865:7..668. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB294018 vs. ExPASy Swiss-Prot
Match: CYC_YARLI (Cytochrome c OS=Yarrowia lipolytica GN=CYC1 PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 1.906e-30
Identity = 59/101 (58.42%), Postives = 73/101 (72.28%), Query Frame = 2
Query:  110 GNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQS 412
            G+AK G  +FKT+CAQCHT E G  HK GPNL+G+  R SG   GYSYS ANK   + W  + L++YL NPKKYIPGTKM F GLKKP+DR DLI ++ ++
Sbjct:    6 GSAKKGATLFKTRCAQCHTTEAGGPHKVGPNLHGVINRHSGEAEGYSYSDANKRKGIEWTTEHLFEYLENPKKYIPGTKMAFGGLKKPKDRNDLITWMVEN 106          
BLAST of CB294018 vs. ExPASy Swiss-Prot
Match: CYC_ASHGO (Cytochrome c OS=Ashbya gossypii GN=CYC1 PE=3 SV=2)

HSP 1 Score: 132.109 bits (331), Expect = 2.490e-30
Identity = 60/99 (60.61%), Postives = 72/99 (72.73%), Query Frame = 2
Query:  107 PGNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYL 403
            PG+ K G  +FKT+C QCHT EKG  HK GPNL+G+F RQSG   GYSY+ A  N  V W+ +++ DYL NPKKYIPGTKM F GLKK +DR DLI Y+
Sbjct:    7 PGSEKKGATLFKTRCLQCHTTEKGGPHKVGPNLHGVFSRQSGQVSGYSYTDAMINRNVTWDAQSMSDYLENPKKYIPGTKMAFGGLKKEKDRNDLITYM 105          
BLAST of CB294018 vs. ExPASy Swiss-Prot
Match: CYC_KLULA (Cytochrome c OS=Kluyveromyces lactis GN=CYCK PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 4.247e-30
Identity = 59/98 (60.20%), Postives = 72/98 (73.47%), Query Frame = 2
Query:  110 GNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYL 403
            G+ K G  +FKT+C QCHTVE G  HK GPNL+G+FGR SG   GYSY+ AN    V W+E+T+ DYL NPKKYIPGTKM F GLKK +DR D++ Y+
Sbjct:    8 GSEKKGATLFKTRCLQCHTVEAGGPHKVGPNLHGVFGRHSGKASGYSYTDANIKKNVLWDEQTMSDYLENPKKYIPGTKMAFGGLKKEKDRNDIVTYM 105          
BLAST of CB294018 vs. ExPASy Swiss-Prot
Match: CYC_CAEEL (Cytochrome c OS=Caenorhabditis elegans GN=cyc-2.1 PE=1 SV=2)

HSP 1 Score: 130.183 bits (326), Expect = 9.461e-30
Identity = 60/107 (56.07%), Postives = 79/107 (73.83%), Query Frame = 2
Query:   98 EAPPGNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQSTA 418
            + P G+ + G+K++K +C QCH V+  A  K GP L+G+ GR SGT  G+ YSAANKN  V W ++TL++YLLNPKKYIPGTKMVF GLKK  +RADLI Y++  +A
Sbjct:    3 DIPAGDYEKGKKVYKQRCLQCHVVDSTAT-KTGPTLHGVIGRTSGTVSGFDYSAANKNKGVVWTKETLFEYLLNPKKYIPGTKMVFAGLKKADERADLIKYIEVESA 108          
BLAST of CB294018 vs. ExPASy Swiss-Prot
Match: CYC2_ASCSU (Cytochrome c type-2 OS=Ascaris suum PE=2 SV=3)

HSP 1 Score: 129.413 bits (324), Expect = 1.614e-29
Identity = 56/103 (54.37%), Postives = 78/103 (75.73%), Query Frame = 2
Query:   98 EAPPGNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLK 406
            E P G+ ++G++IFKT+C  CH V+     K GP+LNG+FG  +GT  GY YS ANKN  + W ++T++DYL NPKKY+PG+KM+F GLKK +DRADLI+Y++
Sbjct:    3 EIPEGDYESGKQIFKTRCLMCHVVDSDKA-KSGPSLNGIFGSSAGTVKGYDYSNANKNANIVWTKETMFDYLANPKKYMPGSKMIFAGLKKVEDRADLISYIE 104          
BLAST of CB294018 vs. ExPASy Swiss-Prot
Match: CYC1_DROME (Cytochrome c-1 OS=Drosophila melanogaster GN=Cyt-c-d PE=2 SV=2)

HSP 1 Score: 129.413 bits (324), Expect = 1.614e-29
Identity = 61/101 (60.40%), Postives = 73/101 (72.28%), Query Frame = 2
Query:  110 GNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQS 412
            G+A+ G+KIF  KCAQCHT E G  HK GPNL G+ GR+ GT  GY Y+ AN    V W E  L +YL +PKKYIPGTKMVF GLKK ++RADLIA+LK +
Sbjct:    4 GDAENGKKIFVQKCAQCHTYEVGGKHKVGPNLGGVVGRKCGTAAGYKYTDANIKKGVTWTEGNLDEYLKDPKKYIPGTKMVFAGLKKAEERADLIAFLKSN 104          
BLAST of CB294018 vs. ExPASy Swiss-Prot
Match: CYC2_CAEEL (Probable cytochrome c OS=Caenorhabditis elegans GN=ZC116.2 PE=2 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 4.696e-29
Identity = 62/111 (55.86%), Postives = 76/111 (68.47%), Query Frame = 2
Query:   86 ASFDEAPPGNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQSTA 418
            AS    P G+ + G+KIFK +C QCH V      K GP LNG+ GRQSG   G+ YSAANKN  V W+ +TL+DYL +PKKYIPGTKMVF GLKK  +RADLI +++   A
Sbjct:    9 ASGGAIPEGDNEKGKKIFKQRCEQCHVVNS-LQTKTGPTLNGVIGRQSGQVAGFDYSAANKNKGVVWDRQTLFDYLADPKKYIPGTKMVFAGLKKADERADLIKFIEVEAA 118          
BLAST of CB294018 vs. ExPASy Swiss-Prot
Match: CYCA_TAKRU (Cytochrome c-a OS=Takifugu rubripes GN=cyc-a PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 8.009e-29
Identity = 57/103 (55.34%), Postives = 76/103 (73.79%), Query Frame = 2
Query:  110 GNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQSTA 418
            G+   G+KIF  +C+QCHTV K   HK GPNL GLFGR++G   GYSY+ AN    + W+E+TL  YL NPKKYIPGTKM F G++K ++R D+IAY+K++T+
Sbjct:    2 GDIAKGKKIFVQRCSQCHTVTKEGRHKVGPNLWGLFGRKTGQAEGYSYTQANIEKGITWDEETLNVYLQNPKKYIPGTKMNFAGIRKKRERLDIIAYIKEATS 104          
BLAST of CB294018 vs. ExPASy Swiss-Prot
Match: CYC_EUGGR (Cytochrome c OS=Euglena gracilis PE=1 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.366e-28
Identity = 55/99 (55.56%), Postives = 79/99 (79.80%), Query Frame = 2
Query:  110 GNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLK 406
            G+A+ G+K+F+++ AQCH+ +KG  +  GP+L G++GR SG+ PGY+YS ANKN A+ WEE+TL+ +L NPKKY+PGTKM F G+K  +DR D+IAY+K
Sbjct:    1 GDAERGKKLFESRAAQCHSAQKGV-NSTGPSLWGVYGRTSGSVPGYAYSNANKNAAIVWEEETLHKFLENPKKYVPGTKMAFAGIKAKKDRQDIIAYMK 98          
BLAST of CB294018 vs. ExPASy Swiss-Prot
Match: CYC_CAEBR (Cytochrome c OS=Caenorhabditis briggsae GN=cyc-2.1 PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.784e-28
Identity = 60/111 (54.05%), Postives = 78/111 (70.27%), Query Frame = 2
Query:   98 EAPPGNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQSTA*ELA 430
            + P G+ + G+K++K +C QCH V+  A  K GP L G+ GR SGT  G+ YSAANK+  V W  +TL++YLLNPKKYIPGTKMVF GLKK  +RADLI Y++   +  LA
Sbjct:    3 DIPAGDYEKGKKVYKQRCLQCHVVDSTAT-KTGPTLYGVIGRTSGTVAGFDYSAANKSKGVVWTRETLFEYLLNPKKYIPGTKMVFAGLKKADERADLIKYIEVECSKPLA 112          
The following BLAST results are available for this feature:
BLAST of CB294018 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 174
Match NameE-valueIdentityDescription
CYC_YARLI1.906e-3058.42Cytochrome c OS=Yarrowia lipolytica GN=CYC1 PE=3 S... [more]
CYC_ASHGO2.490e-3060.61Cytochrome c OS=Ashbya gossypii GN=CYC1 PE=3 SV=2[more]
CYC_KLULA4.247e-3060.20Cytochrome c OS=Kluyveromyces lactis GN=CYCK PE=3 ... [more]
CYC_CAEEL9.461e-3056.07Cytochrome c OS=Caenorhabditis elegans GN=cyc-2.1 ... [more]
CYC2_ASCSU1.614e-2954.37Cytochrome c type-2 OS=Ascaris suum PE=2 SV=3[more]
CYC1_DROME1.614e-2960.40Cytochrome c-1 OS=Drosophila melanogaster GN=Cyt-c... [more]
CYC2_CAEEL4.696e-2955.86Probable cytochrome c OS=Caenorhabditis elegans GN... [more]
CYCA_TAKRU8.009e-2955.34Cytochrome c-a OS=Takifugu rubripes GN=cyc-a PE=3 ... [more]
CYC_EUGGR1.366e-2855.56Cytochrome c OS=Euglena gracilis PE=1 SV=1[more]
CYC_CAEBR1.784e-2854.05Cytochrome c OS=Caenorhabditis briggsae GN=cyc-2.1... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_06dd03_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06dd03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB294018 ID=CB294018; Name=CB294018; organism=Citrus sinensis; type=EST; length=663bp
GCACTAGGAGAACGCAATCACAGCTCTCTCTCTCTCTCTGCGCTCTTCTT
TCTCTCTTTGGATATTTCAAAACACCACAATAATGGCGTCGTTTGATGAG
GCACCTCCCGGCAATGCAAAGGCCGGAGAGAAGATCTTCAAGACCAAGTG
CGCTCAGTGCCACACCGTCGAGAAAGGCGCCGGTCACAAACAAGGTCCTA
ATTTGAACGGATTGTTTGGAAGGCAATCGGGGACTACACCTGGGTACTCA
TACTCTGCGGCTAACAAGAACATGGCTGTGAATTGGGAGGAAAAGACTTT
GTATGATTACTTGCTCAACCCTAAGAAGTACATTCCTGGAACAAAGATGG
TATTCCCTGGATTGAAGAAGCCTCAGGATCGTGCTGACCTTATTGCATAT
TTGAAACAATCTACTGCATAAGAACTTGCCGATAGTCAGTTTACCTATTC
CATTTTGCAGTTGTTGAAGATTGTTTTGCGGTGCGGATATAGTACTGTTT
TTTACCAATAAATTTTAAACATTTAAGGTTCAGCAATGTTCTTTGTAACT
TGAGCATTGCTAATTTGAGAAAAGGTTGCTGTCATTGGCAAACATGATAT
TCAATTGAATTTCCTGGTTATAATCATATTTCATGAATTTTGGGTGAACC
CAAAAAAAACAAA
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