CB294018

Overview
NameCB294018
Unique NameCB294018
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length663
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB294018 vs. ExPASy Swiss-Prot
Match: CYC_CRIFA (Cytochrome c OS=Crithidia fasciculata PE=1 SV=2)

HSP 1 Score: 125.561 bits (314), Expect = 2.330e-28
Identity = 59/101 (58.42%), Postives = 71/101 (70.30%), Query Frame = 2
Query:  104 PPGNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLK 406
            PPG+A  GEK+FK + AQCHT  +G  +  GPNL GL GR SGT  GY+YS AN    V W    L  YL NPKK++PGTKM F G+KKPQ+RAD+IAYL+
Sbjct:   10 PPGDAARGEKLFKGRAAQCHTANQGGANGVGPNLYGLVGRHSGTIEGYAYSKANAESGVVWTPDVLDVYLENPKKFMPGTKMSFAGMKKPQERADVIAYLE 110          
BLAST of CB294018 vs. ExPASy Swiss-Prot
Match: CYC_CRION (Cytochrome c OS=Crithidia oncopelti PE=1 SV=2)

HSP 1 Score: 124.02 bits (310), Expect = 6.780e-28
Identity = 59/101 (58.42%), Postives = 72/101 (71.29%), Query Frame = 2
Query:  104 PPGNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLK 406
            PPG+A  GEKIFK + AQCHT  KG  +  GPNL G+  R SGT  G++YS AN +  V W  + L  YL NPKK++PGTKM F G+KKPQ+RADLIAYL+
Sbjct:   10 PPGDAAKGEKIFKGRAAQCHTGAKGGANGVGPNLFGIVNRHSGTVEGFAYSKANADSGVVWTPEVLDVYLENPKKFMPGTKMSFAGIKKPQERADLIAYLE 110          
BLAST of CB294018 vs. ExPASy Swiss-Prot
Match: CYC_EUGVI (Cytochrome c OS=Euglena viridis PE=1 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 5.740e-27
Identity = 53/99 (53.54%), Postives = 76/99 (76.77%), Query Frame = 2
Query:  110 GNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLK 406
            G+A+ G+K+F+++  QCH+ +KG  +  GP L G++GR SGT PGY+YS ANKN A+ WE+++L  +L NPKKY+PGTKM F G+K  +DR D+IAY+K
Sbjct:    1 GDAERGKKLFESRAGQCHSSQKGV-NSTGPALYGVYGRTSGTVPGYAYSNANKNAAIVWEDESLNKFLENPKKYVPGTKMAFAGIKAKKDRLDIIAYMK 98          
BLAST of CB294018 vs. ExPASy Swiss-Prot
Match: CYC2_RHOVI (Cytochrome c2 OS=Rhodopseudomonas viridis GN=cycA PE=1 SV=2)

HSP 1 Score: 115.931 bits (289), Expect = 1.846e-25
Identity = 57/119 (47.90%), Postives = 78/119 (65.55%), Query Frame = 2
Query:   62 IFQNTTIMASFDEAPPGNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQSTA 418
            +F    + AS   A   +A +GE++FK +C  CH++  GA +K GP LNGLFGR SGT  G++YS ANKN  + W E+   +Y+ +PK  IPGTKM+F G+K  Q  +DLIAY+KQ  A
Sbjct:    5 VFGLFVLAASVAPAAAQDAASGEQVFK-QCLVCHSIGPGAKNKVGPVLNGLFGRHSGTIEGFAYSDANKNSGITWTEEVFREYIRDPKAKIPGTKMIFAGVKDEQKVSDLIAYIKQFNA 122          
BLAST of CB294018 vs. ExPASy Swiss-Prot
Match: CYC2_RHOVA (Cytochrome c2 OS=Rhodomicrobium vannielii PE=1 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 5.940e-24
Identity = 54/100 (54.00%), Postives = 69/100 (69.00%), Query Frame = 2
Query:  110 GNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQ 409
            G+   GE++FK +C  CH V   A +  GP  N +FG+++G  PG++YS A KN  + W+E TL  YL NPK  +PGTKMVF GLK PQDRAD+IAYLKQ
Sbjct:    2 GDPVKGEQVFK-QCKICHQVGPTAKNGVGPEQNDVFGQKAGARPGFNYSDAMKNSGLTWDEATLDKYLENPKAVVPGTKMVFVGLKNPQDRADVIAYLKQ 100          
BLAST of CB294018 vs. ExPASy Swiss-Prot
Match: CYC2_RHOGL (Cytochrome c2 OS=Rhodopila globiformis PE=1 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 5.560e-22
Identity = 50/102 (49.02%), Postives = 66/102 (64.71%), Query Frame = 2
Query:  101 APPGNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLK 406
            APPG+   G+ +F T C  CHT  KG  +K GP+L G+ GR SG  PGY+YS AN    + W    L+ Y+ +P+K +PGTKM +PG   PQ RAD+IAYL+
Sbjct:    3 APPGDPVEGKHLFHTICILCHTDIKGR-NKVGPSLYGVVGRHSGIEPGYNYSEANIKSGIVWTPDVLFKYIEHPQKIVPGTKMGYPGQPDPQKRADIIAYLE 103          
BLAST of CB294018 vs. ExPASy Swiss-Prot
Match: CYC21_RHOCR (Cytochrome c2 OS=Rhodoplanes cryptolactis PE=1 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 5.560e-22
Identity = 50/99 (50.51%), Postives = 68/99 (68.69%), Query Frame = 2
Query:  113 NAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQ 409
            + +AG   F+ KCA CH V +GA +K GP LNGL GR+SGT  G++YS ANKN  + W++ T   Y+ +P+  IPGTKMVF G+K  +++ DL AYL Q
Sbjct:    2 DVEAGAVSFR-KCAPCHAVGEGAANKVGPVLNGLPGRKSGTIAGFNYSDANKNSGITWDKATFKTYITDPRAKIPGTKMVFAGIKNDKEQDDLWAYLSQ 99          
BLAST of CB294018 vs. ExPASy Swiss-Prot
Match: CYC2_RHOAC (Cytochrome c2 OS=Rhodopseudomonas acidophila PE=1 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.239e-21
Identity = 48/103 (46.60%), Postives = 67/103 (65.05%), Query Frame = 2
Query:  110 GNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQSTA 418
            G+  AG+K+F  KCA CH +  GA +  GP+LNG+  R++G   G++YS ANKN  + W+E T  +Y+  P+K +PGTKM FPGL    DR ++ AYL Q  A
Sbjct:    2 GDPDAGQKVF-LKCAACHKIGPGAKNGVGPSLNGVANRKAGQAEGFAYSDANKNSGLTWDEATFKEYITAPQKKVPGTKMTFPGLPNEADRDNIWAYLSQFKA 103          
BLAST of CB294018 vs. ExPASy Swiss-Prot
Match: CY550_BRAJA (Cytochrome c-550 OS=Bradyrhizobium japonicum GN=cycA PE=1 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.604e-21
Identity = 52/112 (46.43%), Postives = 71/112 (63.39%), Query Frame = 2
Query:   74 TTIMASFDEAPPGNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQ 409
            +T M+S  +A   +A AG+  F  KC  CH + +GA +K GP LNGL GR+SGT P YSYS ANKN  + W+E T  +Y+ +PK  IPGTKM F G+K   +  +L  ++ Q
Sbjct:   19 STAMSS--KAMAQDAAAGKTSFN-KCLACHAIGEGAKNKVGPELNGLNGRKSGTAPDYSYSDANKNSGITWDEATFKEYIKDPKAKIPGTKMAFAGIKNETEINNLWTFVSQ 127          
BLAST of CB294018 vs. ExPASy Swiss-Prot
Match: CYC2_RHOMA (Cytochrome c2 OS=Rhodopseudomonas marina PE=1 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.788e-20
Identity = 46/98 (46.94%), Postives = 69/98 (70.41%), Query Frame = 2
Query:  122 AGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVN---WEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLK 406
            AG+K+++ +C  CH+V +GA ++ GP  N LFGR +G+ P + YS A K+   N   W +K+L++YL NP+ Y+P TKM+F GLKKP+D   ++AYLK
Sbjct:    8 AGKKVYR-QCHACHSVGEGAKNRVGPEQNNLFGRVAGSLPDFRYSKAMKSAGENGLVWTDKSLHEYLKNPRAYVPKTKMIFAGLKKPEDIDAVVAYLK 104          
The following BLAST results are available for this feature:
BLAST of CB294018 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 174
Match NameE-valueIdentityDescription
CYC_CRIFA2.330e-2858.42Cytochrome c OS=Crithidia fasciculata PE=1 SV=2[more]
CYC_CRION6.780e-2858.42Cytochrome c OS=Crithidia oncopelti PE=1 SV=2[more]
CYC_EUGVI5.740e-2753.54Cytochrome c OS=Euglena viridis PE=1 SV=1[more]
CYC2_RHOVI1.846e-2547.90Cytochrome c2 OS=Rhodopseudomonas viridis GN=cycA ... [more]
CYC2_RHOVA5.940e-2454.00Cytochrome c2 OS=Rhodomicrobium vannielii PE=1 SV=... [more]
CYC2_RHOGL5.560e-2249.02Cytochrome c2 OS=Rhodopila globiformis PE=1 SV=1[more]
CYC21_RHOCR5.560e-2250.51Cytochrome c2 OS=Rhodoplanes cryptolactis PE=1 SV=... [more]
CYC2_RHOAC1.239e-2146.60Cytochrome c2 OS=Rhodopseudomonas acidophila PE=1 ... [more]
CY550_BRAJA3.604e-2146.43Cytochrome c-550 OS=Bradyrhizobium japonicum GN=cy... [more]
CYC2_RHOMA1.788e-2046.94Cytochrome c2 OS=Rhodopseudomonas marina PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_06dd03_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06dd03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB294018 ID=CB294018; Name=CB294018; organism=Citrus sinensis; type=EST; length=663bp
GCACTAGGAGAACGCAATCACAGCTCTCTCTCTCTCTCTGCGCTCTTCTT
TCTCTCTTTGGATATTTCAAAACACCACAATAATGGCGTCGTTTGATGAG
GCACCTCCCGGCAATGCAAAGGCCGGAGAGAAGATCTTCAAGACCAAGTG
CGCTCAGTGCCACACCGTCGAGAAAGGCGCCGGTCACAAACAAGGTCCTA
ATTTGAACGGATTGTTTGGAAGGCAATCGGGGACTACACCTGGGTACTCA
TACTCTGCGGCTAACAAGAACATGGCTGTGAATTGGGAGGAAAAGACTTT
GTATGATTACTTGCTCAACCCTAAGAAGTACATTCCTGGAACAAAGATGG
TATTCCCTGGATTGAAGAAGCCTCAGGATCGTGCTGACCTTATTGCATAT
TTGAAACAATCTACTGCATAAGAACTTGCCGATAGTCAGTTTACCTATTC
CATTTTGCAGTTGTTGAAGATTGTTTTGCGGTGCGGATATAGTACTGTTT
TTTACCAATAAATTTTAAACATTTAAGGTTCAGCAATGTTCTTTGTAACT
TGAGCATTGCTAATTTGAGAAAAGGTTGCTGTCATTGGCAAACATGATAT
TCAATTGAATTTCCTGGTTATAATCATATTTCATGAATTTTGGGTGAACC
CAAAAAAAACAAA
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