CB294018

Overview
NameCB294018
Unique NameCB294018
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length663
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB294018 vs. ExPASy Swiss-Prot
Match: CYC_TRYBB (Cytochrome c (Fragments) OS=Trypanosoma brucei brucei PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 6.796e-20
Identity = 50/101 (49.50%), Postives = 64/101 (63.37%), Query Frame = 2
Query:  104 PPGNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLK 406
            PPG+A A +               G  +  GPNL G+ GR+SGT  G++YS AN++  V W  + L  YL NPKK++PGTKM F GLKKPQ+RADLIAYL+
Sbjct:    4 PPGDAAAAQ---------------GGSNGVGPNLYGIVGRKSGTVEGFTYSKANQDSGVMWTPQVLDVYLENPKKFMPGTKMSFAGLKKPQERADLIAYLE 89          
BLAST of CB294018 vs. ExPASy Swiss-Prot
Match: CYC22_RHOCR (Cytochrome c2 OS=Rhodoplanes cryptolactis PE=1 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.159e-19
Identity = 45/96 (46.88%), Postives = 64/96 (66.67%), Query Frame = 2
Query:  122 AGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQ 409
            AG   F+ KC  CH + +GA +K GP L+GL GR SG+ PG++YS ANK   + W++ T   Y+ +P+  IPGTKMVF G+K  +++ DL A+L Q
Sbjct:    5 AGAVSFR-KCTPCHNIGEGATNKVGPVLDGLEGRHSGSIPGFNYSEANKKSGLTWDKATFKSYIADPRAKIPGTKMVFAGIKNEKEQEDLWAFLTQ 99          
BLAST of CB294018 vs. ExPASy Swiss-Prot
Match: CY550_NITWI (Cytochrome c-550 OS=Nitrobacter winogradskyi PE=1 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.373e-19
Identity = 45/100 (45.00%), Postives = 62/100 (62.00%), Query Frame = 2
Query:  110 GNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQ 409
            G+ +AG+  F  KC  CH + + A +K GP L+GL GR SG   GY+YS ANK   + W E    +Y+ +PK  +PGTKMVF G+KK  +  +L AY+ Q
Sbjct:    1 GDVEAGKAAFN-KCKACHEIGESAKNKVGPELDGLDGRHSGAVEGYAYSPANKASGITWTEAEFKEYIKDPKAKVPGTKMVFAGIKKDSELDNLWAYVSQ 99          
BLAST of CB294018 vs. ExPASy Swiss-Prot
Match: CYC_TETPY (Cytochrome c OS=Tetrahymena pyriformis PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 5.753e-19
Identity = 46/101 (45.54%), Postives = 63/101 (62.38%), Query Frame = 2
Query:  104 PPGNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLK 406
            P G+A AG  IF ++C+ CH +E  +     P L G+ GR++G    ++YS   K   + W EK L+ +L NP K++PGTKM F GL   +DRADLIAYLK
Sbjct:   10 PEGDASAGRDIFDSQCSACHAIEGDS--TAAPVLGGVIGRKAGQEK-FAYSKGMKGSGITWNEKHLFVFLKNPSKHVPGTKMAFAGLPADKDRADLIAYLK 107          
BLAST of CB294018 vs. ExPASy Swiss-Prot
Match: CYCY_RHOCA (Cytochrome c-type cyt cy OS=Rhodobacter capsulatus GN=cycY PE=4 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.282e-18
Identity = 46/98 (46.94%), Postives = 62/98 (63.27%), Query Frame = 2
Query:  110 GNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYL 403
            G+AKAGE+ F   C  CH ++    +  GP+LNG+ GR + T  G+ YS A KN   NW  + L  YL++PK  +PGTKM F GL +  DRA++IAYL
Sbjct:   99 GDAKAGEEKFNKTCKACHKID--GKNAVGPHLNGVIGRATATVEGFKYSTAMKNHVGNWTPERLDIYLVSPKAEVPGTKMSFVGLPEAADRANVIAYL 194          
BLAST of CB294018 vs. ExPASy Swiss-Prot
Match: CYCM_AGRT5 (Cytochrome c homolog OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=cycM PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.417e-17
Identity = 48/106 (45.28%), Postives = 65/106 (61.32%), Query Frame = 2
Query:  113 NAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAA----NKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQSTA 418
            +A  GE +FK KC  CHT E G  +K GPNL  +  R   +  G+SYSA     +K  +V+W+   L  +L  PKK++PGT M F G+KK  +RADLIAYL+  +A
Sbjct:   72 DAAKGEAVFK-KCTSCHTGESGGANKVGPNLFDVVNRPIASHEGFSYSAGMKDFSKGASVHWDYDHLNYFLEAPKKHVPGTAMGFAGVKKETERADLIAYLRSLSA 176          
BLAST of CB294018 vs. ExPASy Swiss-Prot
Match: CYC2_AGRTC (Cytochrome c2 OS=Agrobacterium tumefaciens (strain II Chrys) PE=1 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.157e-17
Identity = 45/101 (44.55%), Postives = 61/101 (60.40%), Query Frame = 2
Query:  110 GNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNM---AVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYL 403
            G+   GE  FK +C+ CH + +GA +K GP LNG+ GR +G  P Y+YS A K      + W  + L D+L  PKK IPG KM   G+ KP++  +LIAYL
Sbjct:    2 GDVAKGEAAFK-RCSACHAIGEGAKNKVGPQLNGIIGRTAGGDPDYNYSNAMKKAGGEGLVWTPQELRDFLSAPKKKIPGNKMALAGISKPEELDNLIAYL 101          
BLAST of CB294018 vs. ExPASy Swiss-Prot
Match: CYC22_RHOFU (Cytochrome c2 iso-2 OS=Rhodospirillum fulvum PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 9.185e-17
Identity = 42/86 (48.84%), Postives = 56/86 (65.12%), Query Frame = 2
Query:  149 CAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLK 406
            C  CH+VE G  +  GP+L G++GR++GT  G+ +S  +    + W+E TL  YL +PK  IPG KMVF GLK P D A +IAYLK
Sbjct:   10 CKACHSVEAGK-NGVGPSLAGVYGRKAGTLAGFKFSDPHAKSGLTWDEPTLTKYLADPKGVIPGNKMVFAGLKNPADVAAVIAYLK 94          
BLAST of CB294018 vs. ExPASy Swiss-Prot
Match: CYCM_RICTY (Cytochrome c homolog OS=Rickettsia typhi GN=cycM PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.046e-16
Identity = 41/98 (41.84%), Postives = 58/98 (59.18%), Query Frame = 2
Query:  113 NAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLK 406
            NA  G +I K KC  CH+++K   +K GP+L  + GR   +   Y YS A   +   W+++ L+ +L  P  Y PGTKM F G+ KPQD AD+I +LK
Sbjct:   73 NANHGREIVK-KCLMCHSLDKDGPNKLGPHLWNIVGRSKASITDYKYSFAISKLGGVWDDENLFAFLHKPSSYAPGTKMSFAGISKPQDIADVILFLK 169          
BLAST of CB294018 vs. ExPASy Swiss-Prot
Match: CYCM_RICBR (Cytochrome c homolog OS=Rickettsia bellii (strain RML369-C) GN=cycM PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.046e-16
Identity = 42/98 (42.86%), Postives = 59/98 (60.20%), Query Frame = 2
Query:  113 NAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLK 406
            NA  G +I K KC  CH+++K   +K GP+L  + GR   +   Y YS A   +  NW++ +L+ +L  P  Y PGTKM F G+ KPQD AD+I +LK
Sbjct:   71 NADNGREIAK-KCLMCHSLDKDGPNKIGPHLWDVAGRPKASITDYKYSPALSALGGNWDDDSLFAFLHKPSSYAPGTKMSFAGISKPQDIADVILFLK 167          
The following BLAST results are available for this feature:
BLAST of CB294018 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 174
Match NameE-valueIdentityDescription
CYC_TRYBB6.796e-2049.50Cytochrome c (Fragments) OS=Trypanosoma brucei bru... [more]
CYC22_RHOCR1.159e-1946.88Cytochrome c2 OS=Rhodoplanes cryptolactis PE=1 SV=... [more]
CY550_NITWI3.373e-1945.00Cytochrome c-550 OS=Nitrobacter winogradskyi PE=1 ... [more]
CYC_TETPY5.753e-1945.54Cytochrome c OS=Tetrahymena pyriformis PE=1 SV=1[more]
CYCY_RHOCA1.282e-1846.94Cytochrome c-type cyt cy OS=Rhodobacter capsulatus... [more]
CYCM_AGRT51.417e-1745.28Cytochrome c homolog OS=Agrobacterium tumefaciens ... [more]
CYC2_AGRTC3.157e-1744.55Cytochrome c2 OS=Agrobacterium tumefaciens (strain... [more]
CYC22_RHOFU9.185e-1748.84Cytochrome c2 iso-2 OS=Rhodospirillum fulvum PE=1 ... [more]
CYCM_RICTY2.046e-1641.84Cytochrome c homolog OS=Rickettsia typhi GN=cycM P... [more]
CYCM_RICBR2.046e-1642.86Cytochrome c homolog OS=Rickettsia bellii (strain ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_06dd03_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06dd03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB294018 ID=CB294018; Name=CB294018; organism=Citrus sinensis; type=EST; length=663bp
GCACTAGGAGAACGCAATCACAGCTCTCTCTCTCTCTCTGCGCTCTTCTT
TCTCTCTTTGGATATTTCAAAACACCACAATAATGGCGTCGTTTGATGAG
GCACCTCCCGGCAATGCAAAGGCCGGAGAGAAGATCTTCAAGACCAAGTG
CGCTCAGTGCCACACCGTCGAGAAAGGCGCCGGTCACAAACAAGGTCCTA
ATTTGAACGGATTGTTTGGAAGGCAATCGGGGACTACACCTGGGTACTCA
TACTCTGCGGCTAACAAGAACATGGCTGTGAATTGGGAGGAAAAGACTTT
GTATGATTACTTGCTCAACCCTAAGAAGTACATTCCTGGAACAAAGATGG
TATTCCCTGGATTGAAGAAGCCTCAGGATCGTGCTGACCTTATTGCATAT
TTGAAACAATCTACTGCATAAGAACTTGCCGATAGTCAGTTTACCTATTC
CATTTTGCAGTTGTTGAAGATTGTTTTGCGGTGCGGATATAGTACTGTTT
TTTACCAATAAATTTTAAACATTTAAGGTTCAGCAATGTTCTTTGTAACT
TGAGCATTGCTAATTTGAGAAAAGGTTGCTGTCATTGGCAAACATGATAT
TCAATTGAATTTCCTGGTTATAATCATATTTCATGAATTTTGGGTGAACC
CAAAAAAAACAAA
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