CB294018

Overview
NameCB294018
Unique NameCB294018
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length663
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB294018_ssr24 microsatellite CB294018_ssr24:24..39. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig8865 contig Csv1_Contig8865:7..668. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB294018 vs. ExPASy Swiss-Prot
Match: CYCM_RICPR (Cytochrome c homolog OS=Rickettsia prowazekii GN=cycM PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.490e-16
Identity = 41/98 (41.84%), Postives = 58/98 (59.18%), Query Frame = 2
Query:  113 NAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLK 406
            NA  G +I K KC  CH+++K   +K GP+L  + GR   +   Y YS A   +   W+++ L+ +L  P  Y PGTKM F G+ KPQD AD+I +LK
Sbjct:   73 NANHGREIAK-KCLMCHSLDKDGPNKLGPHLWNIVGRPKASITDYKYSFAISKLGGVWDDENLFAFLHKPSSYAPGTKMSFAGISKPQDIADVILFLK 169          
BLAST of CB294018 vs. ExPASy Swiss-Prot
Match: CY552_PARDE (Cytochrome c-552 OS=Paracoccus denitrificans GN=cycM PE=1 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.490e-16
Identity = 48/110 (43.64%), Postives = 65/110 (59.09%), Query Frame = 2
Query:   77 TIMASFDEAPPGNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLK 406
            T++AS D A      AGEK+F  KC  CH ++   G   GP+LNG+ GR      G++YS   K    +W  + L ++L NPK  + GTKM F GL K +DRA+LIAYL+
Sbjct:   73 TVLASADPA------AGEKVFG-KCKACHKLDGNDG--VGPHLNGVVGRTVAGVDGFNYSDPMKAHGGDWTPEALQEFLTNPKAVVKGTKMAFAGLPKIEDRANLIAYLE 173          
BLAST of CB294018 vs. ExPASy Swiss-Prot
Match: CYCM_RICCN (Cytochrome c homolog OS=Rickettsia conorii GN=cycM PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.559e-16
Identity = 47/121 (38.84%), Postives = 67/121 (55.37%), Query Frame = 2
Query:   68 QNTTIMASFDEAP--------PGNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLK 406
            QNTT +   ++AP          NA  G +I K KC  CH+++K   +K GP+L  + GR   +   Y YS A   +   W++ +L+ +L  P  Y PGTKM F G+ KPQD AD+I +LK
Sbjct:   53 QNTTAL---EQAPVNIPELMKTANADNGREIAK-KCLMCHSLDKDGPNKLGPHLWDVTGRPKASIADYKYSPALSKLGGVWDDDSLFAFLHKPSSYAPGTKMSFAGISKPQDIADVILFLK 169          
BLAST of CB294018 vs. ExPASy Swiss-Prot
Match: CYC22_RHOMO (Cytochrome c2 iso-2 OS=Rhodospirillum molischianum PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 5.954e-16
Identity = 41/88 (46.59%), Postives = 55/88 (62.50%), Query Frame = 2
Query:  143 TKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLK 406
            T C  CH+VE G  +  GP+L G++GR++GT  G+ +S  +    + W+E TL  YL +PK  IPG KMVF GLK P D   +I YLK
Sbjct:    8 TLCKACHSVEAGK-NGVGPSLAGVYGRKAGTISGFKFSDPHIKSGLTWDEPTLTKYLADPKTVIPGNKMVFAGLKNPDDVKAVIEYLK 94          
BLAST of CB294018 vs. ExPASy Swiss-Prot
Match: CYCM_RICFE (Cytochrome c homolog OS=Rickettsia felis GN=cycM PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.326e-15
Identity = 47/121 (38.84%), Postives = 67/121 (55.37%), Query Frame = 2
Query:   68 QNTTIMASFDEAP--------PGNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLK 406
            QNTT   + ++AP          NA  G +I K KC  CH+++K   +K GP+L  + GR   +   Y YS A   +   W++ +L+ +L  P  Y PGTKM F G+ KPQD AD+I +LK
Sbjct:   53 QNTT---ASEQAPVNIPELMKTANADNGREIAK-KCLVCHSLDKDGPNKLGPHLWDVAGRPKASIADYKYSPALSKLGGVWDDDSLFAFLHKPSSYAPGTKMSFAGISKPQDIADVILFLK 169          
BLAST of CB294018 vs. ExPASy Swiss-Prot
Match: CY550_THINO (Cytochrome c-550 (Fragment) OS=Thiobacillus novellus PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.326e-15
Identity = 44/94 (46.81%), Postives = 53/94 (56.38%), Query Frame = 2
Query:  146 KCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVN---WEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQSTA 418
            KC  CH V +GA +K GP LNG+ GR+ G+  G++YS   K        W  + L  YL NPK Y+PG KMVF GL K     DL AYLK   A
Sbjct:   10 KCMACHAVGEGAKNKVGPELNGIIGRKMGSIEGFNYSDTLKEHNAKGDVWTAEILSQYLANPKGYMPGVKMVFAGLPKEIRADDLEAYLKTFNA 103          
BLAST of CB294018 vs. ExPASy Swiss-Prot
Match: CYC2_RHOPH (Cytochrome c2 OS=Rhodospirillum photometricum PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.859e-15
Identity = 48/109 (44.04%), Postives = 61/109 (55.96%), Query Frame = 2
Query:  110 GNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAV---NWEEKTLYDYLLNPKKYI--------PGTKMVFPGLKKPQDRADLIAYL 403
            G+A  GEKI K KC  CH + KG   K GP L G+FGR +GT  GYSYS     M      W++  L  YLL+PK Y+          +KM+F  L+K  D A++IAYL
Sbjct:    2 GDAAVGEKIAKAKCTACHDLNKGGPIKVGPPLFGVFGRTTGTFAGYSYSPGYTVMGQKGHTWDDNALKAYLLDPKGYVQAKSGDPKANSKMIF-RLEKDDDVANVIAYL 109          
BLAST of CB294018 vs. ExPASy Swiss-Prot
Match: CYCM_BRAJA (Cytochrome c homolog OS=Bradyrhizobium japonicum GN=cycM PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.040e-15
Identity = 40/87 (45.98%), Postives = 52/87 (59.77%), Query Frame = 2
Query:  146 KCAQCHTVEKGAGHKQGPNLNGLFGRQSGT-TPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYL 403
            KC  CHT EKG  ++ GPNL G+ G   G    G+++SAA K     W    L  ++ NPK +IPGT M F G+ K  +RAD+IAYL
Sbjct:   83 KCGACHTFEKGGPNRVGPNLYGVVGEARGEGRNGFNFSAAMKGKGGTWTFDDLNKFIANPKGFIPGTAMGFAGIPKDSERADVIAYL 169          
BLAST of CB294018 vs. ExPASy Swiss-Prot
Match: CYC21_RHOFU (Cytochrome c2 iso-1 OS=Rhodospirillum fulvum PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 5.572e-14
Identity = 41/89 (46.07%), Postives = 55/89 (61.80%), Query Frame = 2
Query:  146 KCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKM--VFPGLKKPQDRADLIAYLK 406
            +C  CH++E G  +  GP+L+G +GR+ G  P Y YSAA+    +  +E  L +YL NPK  IPG KM   F GLKKP+D   +I YLK
Sbjct:    9 QCKACHSIEAGK-NGVGPSLSGAYGRKVGLAPNYKYSAAHLASGMTIDEAMLTNYLANPKATIPGNKMGASFGGLKKPEDVKAVIEYLK 96          
BLAST of CB294018 vs. ExPASy Swiss-Prot
Match: CYC21_RHOMO (Cytochrome c2 iso-1 OS=Rhodospirillum molischianum PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.612e-13
Identity = 39/89 (43.82%), Postives = 54/89 (60.67%), Query Frame = 2
Query:  146 KCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKM--VFPGLKKPQDRADLIAYLK 406
            +C  CH+++ G  +  GP+L+G +GR+ G  P Y YS A+    +  ++  L  YL NPK+ IPG KM   F GLK P D A +IAYLK
Sbjct:   10 QCKACHSIDAGK-NGVGPSLSGAYGRKVGLAPNYKYSPAHLASGMTIDDAMLTKYLANPKETIPGNKMGAAFGGLKNPADVAAVIAYLK 97          
The following BLAST results are available for this feature:
BLAST of CB294018 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 174
Match NameE-valueIdentityDescription
CYCM_RICPR3.490e-1641.84Cytochrome c homolog OS=Rickettsia prowazekii GN=c... [more]
CY552_PARDE3.490e-1643.64Cytochrome c-552 OS=Paracoccus denitrificans GN=cy... [more]
CYCM_RICCN4.559e-1638.84Cytochrome c homolog OS=Rickettsia conorii GN=cycM... [more]
CYC22_RHOMO5.954e-1646.59Cytochrome c2 iso-2 OS=Rhodospirillum molischianum... [more]
CYCM_RICFE1.326e-1538.84Cytochrome c homolog OS=Rickettsia felis GN=cycM P... [more]
CY550_THINO1.326e-1546.81Cytochrome c-550 (Fragment) OS=Thiobacillus novell... [more]
CYC2_RHOPH3.859e-1544.04Cytochrome c2 OS=Rhodospirillum photometricum PE=1... [more]
CYCM_BRAJA5.040e-1545.98Cytochrome c homolog OS=Bradyrhizobium japonicum G... [more]
CYC21_RHOFU5.572e-1446.07Cytochrome c2 iso-1 OS=Rhodospirillum fulvum PE=1 ... [more]
CYC21_RHOMO3.612e-1343.82Cytochrome c2 iso-1 OS=Rhodospirillum molischianum... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_06dd03_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06dd03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB294018 ID=CB294018; Name=CB294018; organism=Citrus sinensis; type=EST; length=663bp
GCACTAGGAGAACGCAATCACAGCTCTCTCTCTCTCTCTGCGCTCTTCTT
TCTCTCTTTGGATATTTCAAAACACCACAATAATGGCGTCGTTTGATGAG
GCACCTCCCGGCAATGCAAAGGCCGGAGAGAAGATCTTCAAGACCAAGTG
CGCTCAGTGCCACACCGTCGAGAAAGGCGCCGGTCACAAACAAGGTCCTA
ATTTGAACGGATTGTTTGGAAGGCAATCGGGGACTACACCTGGGTACTCA
TACTCTGCGGCTAACAAGAACATGGCTGTGAATTGGGAGGAAAAGACTTT
GTATGATTACTTGCTCAACCCTAAGAAGTACATTCCTGGAACAAAGATGG
TATTCCCTGGATTGAAGAAGCCTCAGGATCGTGCTGACCTTATTGCATAT
TTGAAACAATCTACTGCATAAGAACTTGCCGATAGTCAGTTTACCTATTC
CATTTTGCAGTTGTTGAAGATTGTTTTGCGGTGCGGATATAGTACTGTTT
TTTACCAATAAATTTTAAACATTTAAGGTTCAGCAATGTTCTTTGTAACT
TGAGCATTGCTAATTTGAGAAAAGGTTGCTGTCATTGGCAAACATGATAT
TCAATTGAATTTCCTGGTTATAATCATATTTCATGAATTTTGGGTGAACC
CAAAAAAAACAAA
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