CB294018

Overview
NameCB294018
Unique NameCB294018
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length663
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB294018_ssr24 microsatellite CB294018_ssr24:24..39. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig8865 contig Csv1_Contig8865:7..668. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB294018 vs. ExPASy Swiss-Prot
Match: CYC_MIRLE (Cytochrome c OS=Mirounga leonina GN=CYCS PE=1 SV=2)

HSP 1 Score: 148.673 bits (374), Expect = 2.571e-35
Identity = 67/102 (65.69%), Postives = 82/102 (80.39%), Query Frame = 2
Query:  110 GNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQST 415
            G+ + G+KIF  KCAQCHTVEKG  HK GPNL+GLFGR++G  PG+SY+ ANKN  + W E+TL +YL NPKKYIPGTKM+F G+KK  +RADLIAYLK +T
Sbjct:    2 GDVEKGKKIFVQKCAQCHTVEKGGKHKTGPNLHGLFGRKTGQAPGFSYTDANKNKGITWGEETLMEYLENPKKYIPGTKMIFAGIKKTGERADLIAYLKIAT 103          
BLAST of CB294018 vs. ExPASy Swiss-Prot
Match: CYC_HORSE (Cytochrome c OS=Equus caballus GN=CYCS PE=1 SV=2)

HSP 1 Score: 148.673 bits (374), Expect = 2.571e-35
Identity = 65/102 (63.73%), Postives = 83/102 (81.37%), Query Frame = 2
Query:  110 GNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQST 415
            G+ + G+KIF  KCAQCHTVEKG  HK GPNL+GLFGR++G  PG++Y+ ANKN  + W+E+TL +YL NPKKYIPGTKM+F G+KK  +R DLIAYLK++T
Sbjct:    2 GDVEKGKKIFVQKCAQCHTVEKGGKHKTGPNLHGLFGRKTGQAPGFTYTDANKNKGITWKEETLMEYLENPKKYIPGTKMIFAGIKKKTEREDLIAYLKKAT 103          
BLAST of CB294018 vs. ExPASy Swiss-Prot
Match: CYC2_RAT (Cytochrome c, testis-specific OS=Rattus norvegicus GN=Cyct PE=2 SV=2)

HSP 1 Score: 148.673 bits (374), Expect = 2.571e-35
Identity = 68/103 (66.02%), Postives = 83/103 (80.58%), Query Frame = 2
Query:  110 GNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQSTA 418
            G+A+AG+KIF  KCAQCHTVEKG  HK GPNL GLFGR++G  PG+SY+ ANKN  V W E+TL +YL NPKKYIPGTKM+F G+KK  +R DLI YLK++T+
Sbjct:    2 GDAEAGKKIFIQKCAQCHTVEKGGKHKTGPNLWGLFGRKTGQAPGFSYTDANKNKGVIWTEETLMEYLENPKKYIPGTKMIFAGIKKKSEREDLIQYLKEATS 104          
BLAST of CB294018 vs. ExPASy Swiss-Prot
Match: CYC_SHEEP (Cytochrome c OS=Ovis aries GN=CYCS PE=1 SV=2)

HSP 1 Score: 148.288 bits (373), Expect = 3.357e-35
Identity = 66/102 (64.71%), Postives = 82/102 (80.39%), Query Frame = 2
Query:  110 GNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQST 415
            G+ + G+KIF  KCAQCHTVEKG  HK GPNL+GLFGR++G  PG+SY+ ANKN  + W E+TL +YL NPKKYIPGTKM+F G+KK  +R DLIAYLK++T
Sbjct:    2 GDVEKGKKIFVQKCAQCHTVEKGGKHKTGPNLHGLFGRKTGQAPGFSYTDANKNKGITWGEETLMEYLENPKKYIPGTKMIFAGIKKKGEREDLIAYLKKAT 103          
BLAST of CB294018 vs. ExPASy Swiss-Prot
Match: CYC_PIG (Cytochrome c OS=Sus scrofa GN=CYCS PE=1 SV=2)

HSP 1 Score: 148.288 bits (373), Expect = 3.357e-35
Identity = 66/102 (64.71%), Postives = 82/102 (80.39%), Query Frame = 2
Query:  110 GNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQST 415
            G+ + G+KIF  KCAQCHTVEKG  HK GPNL+GLFGR++G  PG+SY+ ANKN  + W E+TL +YL NPKKYIPGTKM+F G+KK  +R DLIAYLK++T
Sbjct:    2 GDVEKGKKIFVQKCAQCHTVEKGGKHKTGPNLHGLFGRKTGQAPGFSYTDANKNKGITWGEETLMEYLENPKKYIPGTKMIFAGIKKKGEREDLIAYLKKAT 103          
BLAST of CB294018 vs. ExPASy Swiss-Prot
Match: CYC_PECGU (Cytochrome c OS=Pectinaria gouldii PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 3.357e-35
Identity = 66/106 (62.26%), Postives = 83/106 (78.30%), Query Frame = 2
Query:   98 EAPPGNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQST 415
            + P G+A  G+K+F  +CAQCHTVE G  HK GPNL+GLFGR++G  PG+SY+ ANKN  + W + TL+ YL NPKKYIPGTKM+F GLKK  +RADLIAYL++ST
Sbjct:    3 DIPAGDAAKGKKVFVQRCAQCHTVEAGGKHKTGPNLSGLFGRKTGQAPGFSYTDANKNKGITWGKDTLWVYLENPKKYIPGTKMIFAGLKKKNERADLIAYLEEST 108          
BLAST of CB294018 vs. ExPASy Swiss-Prot
Match: CYC_MACGI (Cytochrome c OS=Macropus giganteus GN=CYCS PE=1 SV=2)

HSP 1 Score: 148.288 bits (373), Expect = 3.357e-35
Identity = 66/102 (64.71%), Postives = 82/102 (80.39%), Query Frame = 2
Query:  110 GNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQST 415
            G+ + G+KIF  KCAQCHTVEKG  HK GPNLNG+FGR++G  PG++Y+ ANKN  + W E TL +YL NPKKYIPGTKM+F G+KK  +RADLIAYLK++T
Sbjct:    2 GDVEKGKKIFVQKCAQCHTVEKGGKHKTGPNLNGIFGRKTGQAPGFTYTDANKNKGIIWGEDTLMEYLENPKKYIPGTKMIFAGIKKKGERADLIAYLKKAT 103          
BLAST of CB294018 vs. ExPASy Swiss-Prot
Match: CYC_LUCCU (Cytochrome c OS=Lucilia cuprina PE=1 SV=2)

HSP 1 Score: 148.288 bits (373), Expect = 3.357e-35
Identity = 64/104 (61.54%), Postives = 82/104 (78.85%), Query Frame = 2
Query:  104 PPGNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQST 415
            P G+ + G+KIF  +CAQCHTVE G  HK GPNL+GLFGR++G  PG++Y+ ANK   + W++ TL++YL NPKKYIPGTKM+F GLKKP +R DLIAYLK +T
Sbjct:    4 PAGDVEKGKKIFVQRCAQCHTVEAGGKHKVGPNLHGLFGRKTGQAPGFAYTNANKAKGITWQDDTLFEYLENPKKYIPGTKMIFAGLKKPNERGDLIAYLKSAT 107          
BLAST of CB294018 vs. ExPASy Swiss-Prot
Match: CYC_COLLI (Cytochrome c OS=Columba livia GN=CYC PE=1 SV=2)

HSP 1 Score: 148.288 bits (373), Expect = 3.357e-35
Identity = 67/103 (65.05%), Postives = 82/103 (79.61%), Query Frame = 2
Query:  110 GNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQSTA 418
            G+ + G+KIF  KC+QCHTVEKG  HK GPNL+GLFGR++G   G+SY+ ANKN  + W E TL +YL NPKKYIPGTKM+F G+KK  +RADLIAYLKQ+TA
Sbjct:    2 GDIEKGKKIFVQKCSQCHTVEKGGKHKTGPNLHGLFGRKTGQAEGFSYTDANKNKGITWGEDTLMEYLENPKKYIPGTKMIFAGIKKKAERADLIAYLKQATA 104          
BLAST of CB294018 vs. ExPASy Swiss-Prot
Match: CYC_BOVIN (Cytochrome c OS=Bos taurus GN=CYCS PE=1 SV=2)

HSP 1 Score: 148.288 bits (373), Expect = 3.357e-35
Identity = 66/102 (64.71%), Postives = 82/102 (80.39%), Query Frame = 2
Query:  110 GNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQST 415
            G+ + G+KIF  KCAQCHTVEKG  HK GPNL+GLFGR++G  PG+SY+ ANKN  + W E+TL +YL NPKKYIPGTKM+F G+KK  +R DLIAYLK++T
Sbjct:    2 GDVEKGKKIFVQKCAQCHTVEKGGKHKTGPNLHGLFGRKTGQAPGFSYTDANKNKGITWGEETLMEYLENPKKYIPGTKMIFAGIKKKGEREDLIAYLKKAT 103          
The following BLAST results are available for this feature:
BLAST of CB294018 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 174
Match NameE-valueIdentityDescription
CYC_MIRLE2.571e-3565.69Cytochrome c OS=Mirounga leonina GN=CYCS PE=1 SV=2[more]
CYC_HORSE2.571e-3563.73Cytochrome c OS=Equus caballus GN=CYCS PE=1 SV=2[more]
CYC2_RAT2.571e-3566.02Cytochrome c, testis-specific OS=Rattus norvegicus... [more]
CYC_SHEEP3.357e-3564.71Cytochrome c OS=Ovis aries GN=CYCS PE=1 SV=2[more]
CYC_PIG3.357e-3564.71Cytochrome c OS=Sus scrofa GN=CYCS PE=1 SV=2[more]
CYC_PECGU3.357e-3562.26Cytochrome c OS=Pectinaria gouldii PE=3 SV=1[more]
CYC_MACGI3.357e-3564.71Cytochrome c OS=Macropus giganteus GN=CYCS PE=1 SV... [more]
CYC_LUCCU3.357e-3561.54Cytochrome c OS=Lucilia cuprina PE=1 SV=2[more]
CYC_COLLI3.357e-3565.05Cytochrome c OS=Columba livia GN=CYC PE=1 SV=2[more]
CYC_BOVIN3.357e-3564.71Cytochrome c OS=Bos taurus GN=CYCS PE=1 SV=2[more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_06dd03_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06dd03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB294018 ID=CB294018; Name=CB294018; organism=Citrus sinensis; type=EST; length=663bp
GCACTAGGAGAACGCAATCACAGCTCTCTCTCTCTCTCTGCGCTCTTCTT
TCTCTCTTTGGATATTTCAAAACACCACAATAATGGCGTCGTTTGATGAG
GCACCTCCCGGCAATGCAAAGGCCGGAGAGAAGATCTTCAAGACCAAGTG
CGCTCAGTGCCACACCGTCGAGAAAGGCGCCGGTCACAAACAAGGTCCTA
ATTTGAACGGATTGTTTGGAAGGCAATCGGGGACTACACCTGGGTACTCA
TACTCTGCGGCTAACAAGAACATGGCTGTGAATTGGGAGGAAAAGACTTT
GTATGATTACTTGCTCAACCCTAAGAAGTACATTCCTGGAACAAAGATGG
TATTCCCTGGATTGAAGAAGCCTCAGGATCGTGCTGACCTTATTGCATAT
TTGAAACAATCTACTGCATAAGAACTTGCCGATAGTCAGTTTACCTATTC
CATTTTGCAGTTGTTGAAGATTGTTTTGCGGTGCGGATATAGTACTGTTT
TTTACCAATAAATTTTAAACATTTAAGGTTCAGCAATGTTCTTTGTAACT
TGAGCATTGCTAATTTGAGAAAAGGTTGCTGTCATTGGCAAACATGATAT
TCAATTGAATTTCCTGGTTATAATCATATTTCATGAATTTTGGGTGAACC
CAAAAAAAACAAA
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