CB294021

Overview
NameCB294021
Unique NameCB294021
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length324
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB294021 vs. ExPASy Swiss-Prot
Match: CP17A_CAVPO (Steroid 17-alpha-hydroxylase/17,20 lyase OS=Cavia porcellus GN=CYP17A1 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 4.028e-12
Identity = 36/105 (34.29%), Postives = 53/105 (50.48%), Query Frame = -2
Query:    6 WAMTELLRNPDILSKVRLELEQPIGKCNPIGESDISRLPYLQAVFKETFRLHPAVPLLLPGKAPADSEGAGFKGPNGAQVLVNPWGIGRDGELRDNPYSFIPERF 320
            W +  LL NP +  K++ E++  +G       SD + L  L+A  +E  R+ P  P+L+P KA  DS    F       VLVN W +  + +  D P  F+PERF
Sbjct:  313 WVIAFLLHNPQVKKKIQEEIDHNVGFSRTPTFSDRNHLLMLEATIREVLRIRPVAPILIPHKANTDSSIGEFAIDKDTNVLVNLWALHHNEQEWDRPDQFMPERF 417          
BLAST of CB294021 vs. ExPASy Swiss-Prot
Match: CP17A_MESAU (Steroid 17-alpha-hydroxylase/17,20 lyase OS=Mesocricetus auratus GN=CYP17A1 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.870e-12
Identity = 34/105 (32.38%), Postives = 55/105 (52.38%), Query Frame = -2
Query:    6 WAMTELLRNPDILSKVRLELEQPIGKCNPIGESDISRLPYLQAVFKETFRLHPAVPLLLPGKAPADSEGAGFKGPNGAQVLVNPWGIGRDGELRDNPYSFIPERF 320
            W +  LL NP++  K++ E++Q IG       +D + L  L+A  +E  R+ P  P+L+P +A +D     F  P    V++N W +    +  D P  F+PERF
Sbjct:  313 WIIAFLLHNPEVKKKIQKEIDQNIGFSRTPTFNDRNHLLMLEATIREVLRIRPVAPMLIPHRANSDMSIGEFSIPKFTPVIINLWALHHSEKEWDQPDRFMPERF 417          
BLAST of CB294021 vs. ExPASy Swiss-Prot
Match: CP4V3_RAT (Cytochrome P450 4V3 OS=Rattus norvegicus GN=Cyp4v3 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.973e-12
Identity = 38/107 (35.51%), Postives = 59/107 (55.14%), Query Frame = -2
Query:    3 WAMTELLRNPDILSKVRLELEQPIGKCN-PIGESDISRLPYLQAVFKETFRLHPAVPLLLPGKAPADSEGAGFKGPNGAQVLVNPWGIGRDGELRDNPYSFIPERFW 320
            W++  L  NP++  KV  EL+   G+ + P+   D+ +L YL  V KET R+ P+VPL     +  D E AG+K   G + ++ P+ + RD     +P  F PERF+
Sbjct:  340 WSLYLLGSNPEVQRKVDKELDDVFGRSHRPVTLEDLKKLKYLDCVIKETLRVFPSVPLFARSLS-EDCEVAGYKISKGTEAVIIPYALHRDPRYFPDPEEFQPERFF 445          
BLAST of CB294021 vs. ExPASy Swiss-Prot
Match: CP4V3_MOUSE (Cytochrome P450 4V3 OS=Mus musculus GN=Cyp4v3 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.973e-12
Identity = 37/107 (34.58%), Postives = 59/107 (55.14%), Query Frame = -2
Query:    3 WAMTELLRNPDILSKVRLELEQPIGKCN-PIGESDISRLPYLQAVFKETFRLHPAVPLLLPGKAPADSEGAGFKGPNGAQVLVNPWGIGRDGELRDNPYSFIPERFW 320
            W++  L  NP++  KV  EL++  G+ + P+   D+ +L YL  V KET R+ P+VPL     +  D E  G+K   G + ++ P+ + RD     +P  F PERF+
Sbjct:  340 WSLYLLGTNPEVQRKVDQELDEVFGRSHRPVTLEDLKKLKYLDCVIKETLRVFPSVPLFARSLS-EDCEVGGYKVTKGTEAIIIPYALHRDPRYFPDPEEFRPERFF 445          
BLAST of CB294021 vs. ExPASy Swiss-Prot
Match: CP2U1_MOUSE (Cytochrome P450 2U1 OS=Mus musculus GN=Cyp2u1 PE=2 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 8.973e-12
Identity = 36/105 (34.29%), Postives = 52/105 (49.52%), Query Frame = -2
Query:    6 WAMTELLRNPDILSKVRLELEQPIGKCNPIGESDISRLPYLQAVFKETFRLHPAVPLLLPGKAPADSEGAGFKGPNGAQVLVNPWGIGRDGELRDNPYSFIPERF 320
            W +  +  NPD+  KV  E+E+ IG       +D +++PY +A   E  RL   VPL +P      +   GF  P G  VL+N W + RD  + + P  F P RF
Sbjct:  349 WCLLYMSLNPDVQKKVHEEIERVIGCDRAPSLTDKAQMPYTEATIMEVQRLSMVVPLAIPHMTSEKTVLQGFTIPKGTVVLINLWSVHRDPAIWEKPDDFCPHRF 453          
BLAST of CB294021 vs. ExPASy Swiss-Prot
Match: CP21A_BOVIN (Steroid 21-hydroxylase OS=Bos taurus GN=CYP21 PE=1 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 8.973e-12
Identity = 38/108 (35.19%), Postives = 57/108 (52.78%), Query Frame = -2
Query:    6 WAMTELLRNPDILSKVRLELEQPIG---KCNPIGESDISRLPYLQAVFKETFRLHPAVPLLLPGKAPADSEGAGFKGPNGAQVLVNPWGIGRDGELRDNPYSFIPERF 320
            WA+  LL +P+I  +++ EL++ +G    C+ +   D +RLP L A   E  RL P VPL LP +    S   G+  P G  V+ N  G   D  + + P+ F P+RF
Sbjct:  301 WAVAFLLHHPEIQRRLQEELDRELGPGASCSRVTYKDRARLPLLNATIAEVLRLRPVVPLALPHRTTRPSSIFGYDIPEGMVVIPNLQGAHLDETVWEQPHEFRPDRF 408          
BLAST of CB294021 vs. ExPASy Swiss-Prot
Match: CP17A_PAPHU (Steroid 17-alpha-hydroxylase/17,20 lyase OS=Papio hamadryas ursinus GN=CYP17A1 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.530e-11
Identity = 35/106 (33.02%), Postives = 54/106 (50.94%), Query Frame = -2
Query:    6 EWAMTELLRNPDILSKVRLELEQPIGKCNPIGESDISRLPYLQAVFKETFRLHPAVPLLLPGKAPADSEGAGFKGPNGAQVLVNPWGIGRDGELRDNPYSFIPERF 323
            +W +  LL NP +  K+   ++Q +G       SD +RL  L+A  +E  R+ P  P+L+P KA  DS    F    G  V++N W +  + +    P  F+PERF
Sbjct:  312 KWIVAFLLHNPQVKKKLYEGIDQNVGFSRTPTISDRNRLLLLEATIREVLRIRPVAPMLIPHKANVDSSIGEFAVDKGTHVIINLWALHHNEKEWHQPDQFMPERF 417          
BLAST of CB294021 vs. ExPASy Swiss-Prot
Match: CP1A2_CANFA (Cytochrome P450 1A2 OS=Canis familiaris GN=CYP1A2 PE=1 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 2.611e-11
Identity = 34/105 (32.38%), Postives = 55/105 (52.38%), Query Frame = -2
Query:    6 WAMTELLRNPDILSKVRLELEQPIGKCNPIGESDISRLPYLQAVFKETFRLHPAVPLLLPGKAPADSEGAGFKGPNGAQVLVNPWGIGRDGELRDNPYSFIPERF 320
            W++  L+ NP+I  +++ EL+  IG+      SD  +LP ++A   E FR    VP  +P     D+   GF  P    V +N W +  D ++  +P++F PERF
Sbjct:  324 WSLMYLVANPEIQRQIQKELDTVIGRARQPRLSDRPQLPLMEAFILEIFRHTSFVPFTIPHSTTKDTTLKGFYIPKECCVFINQWQVNHDQQVWGDPFAFRPERF 428          
BLAST of CB294021 vs. ExPASy Swiss-Prot
Match: CP1A1_FELCA (Cytochrome P450 1A1 OS=Felis catus GN=CYP1A1 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.611e-11
Identity = 37/105 (35.24%), Postives = 54/105 (51.43%), Query Frame = -2
Query:    6 WAMTELLRNPDILSKVRLELEQPIGKCNPIGESDISRLPYLQAVFKETFRLHPAVPLLLPGKAPADSEGAGFKGPNGAQVLVNPWGIGRDGELRDNPYSFIPERF 320
            W +  L+ +P++  K++ EL+  IG+      SD  +LPY++A   E FR    VP  +P     D+  +GF  P    V VN W I  D +L  +P  F PERF
Sbjct:  333 WCLMYLVTSPNVQEKIQKELDTVIGRERQPRLSDRLQLPYMEAFILEMFRHTSFVPFTIPHSTTKDTSLSGFYIPKERCVFVNQWQINHDQKLWGDPSEFRPERF 437          
BLAST of CB294021 vs. ExPASy Swiss-Prot
Match: CP2U1_HUMAN (Cytochrome P450 2U1 OS=Homo sapiens GN=CYP2U1 PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.410e-11
Identity = 34/105 (32.38%), Postives = 52/105 (49.52%), Query Frame = -2
Query:    6 WAMTELLRNPDILSKVRLELEQPIGKCNPIGESDISRLPYLQAVFKETFRLHPAVPLLLPGKAPADSEGAGFKGPNGAQVLVNPWGIGRDGELRDNPYSFIPERF 320
            W +  +  NPD+  KV  E+E+ IG       +D +++PY +A   E  RL   VPL +P     ++   G+  P G  +L N W + RD  + + P  F P RF
Sbjct:  363 WCLLYMSLNPDVQEKVHEEIERVIGANRAPSLTDKAQMPYTEATIMEVQRLTVVVPLAIPHMTSENTVLQGYTIPKGTLILPNLWSVHRDPAIWEKPEDFYPNRF 467          
The following BLAST results are available for this feature:
BLAST of CB294021 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 188
Match NameE-valueIdentityDescription
CP17A_CAVPO4.028e-1234.29Steroid 17-alpha-hydroxylase/17,20 lyase OS=Cavia ... [more]
CP17A_MESAU6.870e-1232.38Steroid 17-alpha-hydroxylase/17,20 lyase OS=Mesocr... [more]
CP4V3_RAT8.973e-1235.51Cytochrome P450 4V3 OS=Rattus norvegicus GN=Cyp4v3... [more]
CP4V3_MOUSE8.973e-1234.58Cytochrome P450 4V3 OS=Mus musculus GN=Cyp4v3 PE=1... [more]
CP2U1_MOUSE8.973e-1234.29Cytochrome P450 2U1 OS=Mus musculus GN=Cyp2u1 PE=2... [more]
CP21A_BOVIN8.973e-1235.19Steroid 21-hydroxylase OS=Bos taurus GN=CYP21 PE=1... [more]
CP17A_PAPHU1.530e-1133.02Steroid 17-alpha-hydroxylase/17,20 lyase OS=Papio ... [more]
CP1A2_CANFA2.611e-1132.38Cytochrome P450 1A2 OS=Canis familiaris GN=CYP1A2 ... [more]
CP1A1_FELCA2.611e-1135.24Cytochrome P450 1A1 OS=Felis catus GN=CYP1A1 PE=2 ... [more]
CP2U1_HUMAN3.410e-1132.38Cytochrome P450 2U1 OS=Homo sapiens GN=CYP2U1 PE=1... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01aa05_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01aa05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB294021 ID=CB294021; Name=CB294021; organism=Citrus sinensis; type=EST; length=324bp
CCCCAAAACCTCTCTGGAATAAAAGAGTATGGGTTGTCCCTTAATTCACC
ATCCCTTCCTATACCCCATGGGTTGACTAAAACTTGGGCCCCATTTGGCC
CCTTGAACCCGGCACCTTCTGAATCTGCTGGGGCTTTACCGGGAAGTAAA
AGAGGAACTGCCGGGTGCAACCGGAAGGTTTCTTTGAATACTGCTTGTAA
ATAAGGCAAGCGGCTGATGTCTGATTCCCCAATTGGATTGCATTTCCCAA
TCGGTTGTTCCAACTCTAATCGGACTTTTGATAAAATATCTGGGTTGCGA
AGTAGTTCTGTCATTGCCCATTCC
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