CB294022

Overview
NameCB294022
Unique NameCB294022
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length770
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13457 contig Csv1_Contig13457:975..1744. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB294022 vs. ExPASy Swiss-Prot
Match: C78A4_PINRA (Cytochrome P450 78A4 OS=Pinus radiata GN=CYP78A4 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.619e-11
Identity = 52/204 (25.49%), Postives = 99/204 (48.53%), Query Frame = 2
Query:  161 PGPTPYPVIGNLLELG-DKPHKSLAKLAKIHGP--IMSLKFGQVTTVVFSSAAMAKEILQNQDTSFCNRTIPDAIYAHGHHEFG--MPWLPVATLWRNFRKICNSHAFSSRQLDANQHLRRKKIQDLLAYVQENCRAGTAIHIGQAAFDTTLNLISNTIFS--IDLADPTSKTAREFKQINWGMMEEAGKPNLSDFFPALENLD 751
            PGP  +P+IG+L+++    PH+ L  LA++HG   +MS   G    V+ S   +A+E+L +    F NR +  +        FG  + + P    WR  R+I ++H F+ R++ A++  R+  +  +L  +Q+   +   + + +      LN I  ++F    D++    +  +  + ++ G  +  G  N +D  P L  LD
Sbjct:   80 PGPKGWPIIGSLMDMSVGLPHRKLESLARLHGAKQLMSFSLGCTPAVITSDPEVARELLTSPH--FANRPLKQSAQ---QLLFGRAIGFAPNGGYWRLLRRIASAHLFAPRRIAAHEAGRQADVVAMLDDIQKEYHSKGVVRVRRHLQGAALNNIMGSVFGRRFDMSHENEEVKKLREMVDEG-FQLLGAFNWADHLPWLRPLD 277          
BLAST of CB294022 vs. ExPASy Swiss-Prot
Match: TCMO_HELTU (Trans-cinnamate 4-monooxygenase OS=Helianthus tuberosus GN=CYP73A1 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.421e-11
Identity = 46/141 (32.62%), Postives = 71/141 (50.35%), Query Frame = 2
Query:  152 RLPPGPTPYPVIGNLLELGDK-PHKSLAKLAKIHGPIMSLKFGQVTTVVFSSAAMAKEILQNQDTSFCNRT---IPDAIYAHGHHEFGMPWLPVATLWRNFRKICNSHAFSSRQLDANQHLRRKKIQDLLAYVQENCRAGT 562
            +LPPGP P P+ GN L++GD   H++L  LAK  G I+ L+ GQ   VV SS  +AKE+L  Q   F +RT   + D     G     M +      WR  R+I     F+++ +   ++    +   ++  V++N  A T
Sbjct:   32 KLPPGPIPVPIFGNWLQVGDDLNHRNLTDLAKRFGEILLLRMGQRNLVVVSSPELAKEVLHTQGVEFGSRTRNVVFDIFTGKGQ---DMVFTVYGEHWRKMRRIMTVPFFTNKVVQQYRYGWEAEAAAVVDDVKKNPAAAT 169          
BLAST of CB294022 vs. ExPASy Swiss-Prot
Match: C71DI_MENSP (Cytochrome P450 71D18 OS=Mentha spicata GN=CYP71D18 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.468e-11
Identity = 42/161 (26.09%), Postives = 86/161 (53.42%), Query Frame = 2
Query:   50 LKMDMVSCVPWLLFSWILVVASNYFSRGFKSGSRRLPPGPTPYPVIGNLLEL-GDKPHKSLAKLAKIHGPIMSLKFGQVTTVVFSSAAMAKEILQNQDTSFCNRTIPDAIYAHGHHEFGMPWLPVATLWRNFRKICNSHAFSSRQLDANQHLRRKKIQDLL 529
            +++D++S +  L+ ++I+ +  N + +      + LPP P   PVIG+L  L G  P      +A+ +GP+  ++ G+V +VV SSA  AK+ ++  D +F +R          + +  + + P    WR  R+IC +   S + + +  ++R+++I+ L+
Sbjct:    1 MELDLLSAIIILVATYIVSLLINQWRKS--KSQQNLPPSPPKLPVIGHLHFLWGGLPQHVFRSIAQKYGPVAHVQLGEVYSVVLSSAEAAKQAMKVLDPNFADRFDGIGSRTMWYDKDDIIFSPYNDHWRQMRRICVTELLSPKNVRSFGYIRQEEIERLI 159          
BLAST of CB294022 vs. ExPASy Swiss-Prot
Match: C71DI_MENGR (Cytochrome P450 71D18 OS=Mentha gracilis GN=CYP71D18 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.468e-11
Identity = 42/161 (26.09%), Postives = 86/161 (53.42%), Query Frame = 2
Query:   50 LKMDMVSCVPWLLFSWILVVASNYFSRGFKSGSRRLPPGPTPYPVIGNLLEL-GDKPHKSLAKLAKIHGPIMSLKFGQVTTVVFSSAAMAKEILQNQDTSFCNRTIPDAIYAHGHHEFGMPWLPVATLWRNFRKICNSHAFSSRQLDANQHLRRKKIQDLL 529
            +++D++S +  L+ ++I+ +  N + +      + LPP P   PVIG+L  L G  P      +A+ +GP+  ++ G+V +VV SSA  AK+ ++  D +F +R          + +  + + P    WR  R+IC +   S + + +  ++R+++I+ L+
Sbjct:    1 MELDLLSAIIILVATYIVSLLINQWRKS--KSQQNLPPSPPKLPVIGHLHFLWGGLPQHVFRSIAQKYGPVAHVQLGEVYSVVLSSAEAAKQAMKVLDPNFADRFDGIGSRTMWYDKDDIIFSPYNDHWRQMRRICVTELLSPKNVRSFGYIRQEEIERLI 159          
BLAST of CB294022 vs. ExPASy Swiss-Prot
Match: TCMO_GLYEC (Trans-cinnamate 4-monooxygenase OS=Glycyrrhiza echinata GN=CYP73A14 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.835e-11
Identity = 48/145 (33.10%), Postives = 71/145 (48.97%), Query Frame = 2
Query:   56 MDMVSCVPWLLFSWILVVASNYFSRGFKSGSRRLPPGPTPYPVIGNLLELGDK-PHKSLAKLAKIHGPIMSLKFGQVTTVVFSSAAMAKEILQNQDTSFCNRT---IPDAIYAHGHHEFGMPWLPVATLWRNFRKICNSHAFSSR 478
            MD++     LL  +I  + +   S+  +    +LPPGP P P+ GN L++GD   H++L  LAK  G I  L+ GQ   VV SS  +AKE+L  Q   F +RT   + D     G     M +      WR  R+I     F+++
Sbjct:    1 MDLLLLEKTLLGLFIAAITAIAISK-LRGRRFKLPPGPIPVPIFGNWLQVGDDLNHRNLTDLAKRFGDIFLLRMGQRNLVVVSSPELAKEVLHTQGVEFGSRTRNVVFDIFTGKGQ---DMVFTVYGEHWRKMRRIMTVPFFTNK 141          
BLAST of CB294022 vs. ExPASy Swiss-Prot
Match: C82A3_SOYBN (Cytochrome P450 82A3 OS=Glycine max GN=CYP82A3 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.835e-11
Identity = 54/209 (25.84%), Postives = 91/209 (43.54%), Query Frame = 2
Query:  176 YPVIGNL--LELGDKPHKSLAKLAKIHGPIMSLKFGQVTTVVFSSAAMAKEILQNQDTSFCNRTIPDAIYAHGHHEFGMPWLPVATLWRNFRKICNSHAFSSRQLDANQHLR-------RKKIQDLLAYVQENCRAGTAIHIGQAAFDTTLNLISNTI-----FSIDLADPTSKTAREFKQINWGMMEEAGKPNLSDFFPALENLDLQG 760
            +P++G+L  L     PHK L  LA  +GP+ ++K G    +V S+  M+KE+    D +  +R    A+    +++  +   P    WR  RKI      S+R+++   H+R        K++ D+ +   +N    T + I Q     T N++   +     F +   +   K  R  K I    M   G   ++D  P L  LDL G
Sbjct:   45 WPILGHLSLLNGSQTPHKVLGALADKYGPLFTIKLGMKPALVLSNWEMSKELFTTNDLAVSSRPKLVAVEVMSYNQAFVGLAPYGPYWRELRKIVTFEFLSNRRIEQRNHIRVSEVRTSIKELFDIWSNGNKNESRYTLVDIKQWLAYLTFNMVVRMVVGKRYFGVMHVEGKDKAQRFMKNIR-EFMNLMGTFTVADGVPCLRWLDLGG 252          
BLAST of CB294022 vs. ExPASy Swiss-Prot
Match: C82A1_PEA (Cytochrome P450 82A1 (Fragment) OS=Pisum sativum GN=CYP82A1 PE=2 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 9.953e-11
Identity = 34/117 (29.06%), Postives = 59/117 (50.43%), Query Frame = 2
Query:  176 YPVIGNL--LELGDKPHKSLAKLAKIHGPIMSLKFGQVTTVVFSSAAMAKEILQNQDTSFCNRTIPDAIYAHGHHEFGMPWLPVATLWRNFRKICNSHAFSSRQLDANQHLRRKKIQ 520
            +P++G+L  +     PHK+L  L   +GPI ++K G    +V S+  +AKE     D    +R  P A+    +++  + W P    WR  RKI      S+R+++   H+R  ++Q
Sbjct:   42 WPLLGHLPLMRNTQTPHKTLGALVDKYGPIFTIKLGATNALVLSNWELAKECFTKNDIVVSSRPKPVAVELMSYNQAFIGWAPYGAYWRQLRKIVTLEILSNRRIELLSHIRVSEVQ 158          
The following BLAST results are available for this feature:
BLAST of CB294022 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 117
Match NameE-valueIdentityDescription
C78A4_PINRA2.619e-1125.49Cytochrome P450 78A4 OS=Pinus radiata GN=CYP78A4 P... [more]
TCMO_HELTU3.421e-1132.62Trans-cinnamate 4-monooxygenase OS=Helianthus tube... [more]
C71DI_MENSP4.468e-1126.09Cytochrome P450 71D18 OS=Mentha spicata GN=CYP71D1... [more]
C71DI_MENGR4.468e-1126.09Cytochrome P450 71D18 OS=Mentha gracilis GN=CYP71D... [more]
TCMO_GLYEC5.835e-1133.10Trans-cinnamate 4-monooxygenase OS=Glycyrrhiza ech... [more]
C82A3_SOYBN5.835e-1125.84Cytochrome P450 82A3 OS=Glycine max GN=CYP82A3 PE=... [more]
C82A1_PEA9.953e-1129.06Cytochrome P450 82A1 (Fragment) OS=Pisum sativum G... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS01_01aa05_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01aa05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB294022 ID=CB294022; Name=CB294022; organism=Citrus sinensis; type=EST; length=770bp
GCCCTATGAATTTGGTGTTTACAAGAGCTTCAAACAAAAGAGCCCCAGAT
TAAAGATGGATATGGTAAGCTGCGTACCATGGCTTCTATTCTCGTGGATT
TTGGTCGTCGCTTCAAATTATTTTTCAAGAGGATTCAAATCTGGATCCAG
AAGGCTTCCACCGGGACCGACGCCTTATCCGGTGATCGGAAACCTCCTGG
AACTCGGCGACAAACCTCACAAGTCACTTGCTAAACTTGCCAAGATTCAT
GGCCCCATAATGAGTCTAAAATTTGGCCAGGTGACCACAGTTGTCTTTTC
TTCTGCAGCCATGGCCAAAGAAATCCTTCAAAATCAAGACACATCTTTCT
GTAACCGAACGATCCCAGACGCAATCTACGCCCACGGCCATCATGAATTC
GGGATGCCCTGGCTGCCTGTGGCGACACTGTGGAGAAATTTTCGAAAAAT
ATGCAACTCACATGCTTTCTCTAGTCGCCAACTCGATGCCAATCAGCACC
TTCGGCGTAAGAAAATCCAAGATCTTCTAGCTTATGTCCAAGAAAATTGC
CGTGCAGGTACAGCAATACATATTGGCCAAGCTGCTTTTGACACTACGCT
TAATTTGATATCCAACACAATTTTTTCTATTGACTTGGCTGATCCCACAT
CAAAAACTGCGCGAGAGTTTAAGCAAATAAATTGGGGTATGATGGAAGAA
GCTGGAAAGCCTAACTTGTCCGATTTTTTTCCTGCGCTTGAGAATCTTGA
CTTGCAAGGTATAAGGCGTC
back to top