CB304394

Overview
NameCB304394
Unique NameCB304394
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length586
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13846 contig Csv1_Contig13846:1..560. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304394 vs. ExPASy Swiss-Prot
Match: HSP7A_DROME (Heat shock 70 kDa protein cognate 1 OS=Drosophila melanogaster GN=Hsc70-1 PE=1 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.223e-24
Identity = 49/103 (47.57%), Postives = 73/103 (70.87%), Query Frame = -3
Query:  276 EEIEKMVQEAEKYKAEDDEHKKKVEAKNALENYAYNMRNTIKDEKISAKLPTADKKKIEDAIEEAIQWLDGNQLAEADEFEDKMKELECICNPIIAKMYQGGG 584
            E+IE+MV +AE Y+  D++ + ++ AKN LE+Y + +R+T+ DE +S++   AD++ I+    E I WLD NQLAE  EFE K +ELE IC+PII ++YQG G
Sbjct:  513 EDIERMVNDAEAYRQADEQQRDRINAKNQLESYCFQLRSTLDDEHLSSRFSPADRETIQQRSSETIAWLDANQLAERQEFEHKQQELERICSPIITRLYQGAG 615          
BLAST of CB304394 vs. ExPASy Swiss-Prot
Match: HSP71_YEAST (Heat shock protein SSA1 OS=Saccharomyces cerevisiae GN=SSA1 PE=1 SV=4)

HSP 1 Score: 112.849 bits (281), Expect = 1.223e-24
Identity = 54/109 (49.54%), Postives = 76/109 (69.72%), Query Frame = -3
Query:  258 EEIEKMVQEAEKYKAEDDEHKKKVEAKNALENYAYNMRNTIKDEKISAKLPTADKKKIEDAIEEAIQWLDGNQLAEADEFEDKMKELECICNPIIAKMYQGGGADAGAS 584
            E+IEKMV EAEK+K ED++  +++ +KN LE+ AY+++NTI +     KL  ADK  +    EE I WLD N  A  +EF+DK+KEL+ I NPI++K+YQ GGA  GA+
Sbjct:  510 EDIEKMVAEAEKFKEEDEKESQRIASKNQLESIAYSLKNTISEA--GDKLEQADKDTVTKKAEETISWLDSNTTASKEEFDDKLKELQDIANPIMSKLYQAGGAPGGAA 616          
BLAST of CB304394 vs. ExPASy Swiss-Prot
Match: HSP76_SAGOE (Heat shock 70 kDa protein 6 OS=Saguinus oedipus GN=HSPA6 PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 1.597e-24
Identity = 46/109 (42.20%), Postives = 80/109 (73.39%), Query Frame = -3
Query:  258 EEIEKMVQEAEKYKAEDDEHKKKVEAKNALENYAYNMRNTIKDEKISAKLPTADKKKIEDAIEEAIQWLDGNQLAEADEFEDKMKELECICNPIIAKMYQGGGADAGAS 584
            EE+E+MV+EAE+YKAED+  + +V AKN+LE + ++++ ++++E +  K+P  D+ K++D  +E + WL+ NQLA+ +E+E + +ELE IC PI +++Y G G   G+S
Sbjct:  515 EEVERMVREAEQYKAEDEAQRDRVAAKNSLETHVFHVKGSLQEESLRDKIPKEDRHKVQDKCQEVLAWLEHNQLADKEEYEHQKRELEQICRPIFSRLYGGPGVPGGSS 623          
BLAST of CB304394 vs. ExPASy Swiss-Prot
Match: HS7C3_DICDI (Heat shock cognate 70 kDa protein 3 OS=Dictyostelium discoideum GN=DDB_G0293674 PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 1.597e-24
Identity = 49/101 (48.51%), Postives = 75/101 (74.26%), Query Frame = -3
Query:  282 EEIEKMVQEAEKYKAEDDEHKKKVEAKNALENYAYNMRNTIKDEKISAKLPTADKKKIEDAIEEAIQWLDGNQLAEADEFEDKMKELECICNPIIAKMYQG 584
            ++I KMV++AEK+K +D + K+++E+KN LENY ++++N+I D+KI +KL  +DK  IE   E  ++WL+ NQ AE DEF  K+ +LE I NPI++K YQG
Sbjct:  514 KDITKMVEDAEKFKEQDQQQKERIESKNNLENYIFSVKNSINDQKIISKLSKSDKNIIESETESTLKWLESNQSAEKDEFNQKISDLESIVNPILSKFYQG 614          
BLAST of CB304394 vs. ExPASy Swiss-Prot
Match: HSP76_HUMAN (Heat shock 70 kDa protein 6 OS=Homo sapiens GN=HSPA6 PE=1 SV=2)

HSP 1 Score: 112.079 bits (279), Expect = 2.086e-24
Identity = 47/109 (43.12%), Postives = 79/109 (72.48%), Query Frame = -3
Query:  258 EEIEKMVQEAEKYKAEDDEHKKKVEAKNALENYAYNMRNTIKDEKISAKLPTADKKKIEDAIEEAIQWLDGNQLAEADEFEDKMKELECICNPIIAKMYQGGGADAGAS 584
            EE+E+MV EAE+YKAED+  + +V AKN+LE + ++++ ++++E +  K+P  D++K++D   E + WL+ NQLAE +E+E + +ELE IC PI +++Y G G   G+S
Sbjct:  515 EEVERMVHEAEQYKAEDEAQRDRVAAKNSLEAHVFHVKGSLQEESLRDKIPEEDRRKMQDKCREVLAWLEHNQLAEKEEYEHQKRELEQICRPIFSRLYGGPGVPGGSS 623          
BLAST of CB304394 vs. ExPASy Swiss-Prot
Match: HSP73_YEAST (Heat shock protein SSA3 OS=Saccharomyces cerevisiae GN=SSA3 PE=1 SV=3)

HSP 1 Score: 111.694 bits (278), Expect = 2.724e-24
Identity = 52/112 (46.43%), Postives = 76/112 (67.86%), Query Frame = -3
Query:  249 EEIEKMVQEAEKYKAEDDEHKKKVEAKNALENYAYNMRNTIKDEKISAKLPTADKKKIEDAIEEAIQWLDGNQLAEADEFEDKMKELECICNPIIAKMYQGGGADAGASMDE 584
            ++I++MV EAEKY+A+D+   ++V+AKN LE+YA+ ++NTI +     K+   D K++E A +E I WLD +Q A  DE++D+ KELE I NPI+ K Y G GA AG    E
Sbjct:  511 DDIDRMVSEAEKYRADDEREAERVQAKNQLESYAFTLKNTINEASFKEKVGEDDAKRLETASQETIDWLDASQAASTDEYKDRQKELEGIANPIMTKFY-GAGAGAGPGAGE 621          
BLAST of CB304394 vs. ExPASy Swiss-Prot
Match: GRP78_APLCA (78 kDa glucose-regulated protein OS=Aplysia californica PE=1 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 2.724e-24
Identity = 57/114 (50.00%), Postives = 82/114 (71.93%), Query Frame = -3
Query:  249 EEIEKMVQEAEKYKAEDDEHKKKVEAKNALENYAYNMRNTIKD-EKISAKLPTADKKKIEDAIEEAIQWLDGNQLAEADEFEDKMKELECICNPIIAKMY-QGGGADAGASMDE 584
            E+IE+M+ +AEKY  ED + K+KV+AKN LE+YAY+++N I D EK+ AKL   DK+KI +A++EAI+WL+ N  AE++ F +K  ELE I  PI+ K+Y Q GGA   +  +E
Sbjct:  545 EDIERMINDAEKYADEDKKVKEKVDAKNELESYAYSLKNQIGDKEKLGAKLSDEDKEKITEAVDEAIKWLESNAEAESEAFNEKKTELEGIVQPIMTKLYEQSGGAPPPSGEEE 658          
BLAST of CB304394 vs. ExPASy Swiss-Prot
Match: HSP71_PICAN (Heat shock protein 70 1 OS=Pichia angusta GN=HSA1 PE=1 SV=2)

HSP 1 Score: 110.153 bits (274), Expect = 7.925e-24
Identity = 50/109 (45.87%), Postives = 72/109 (66.06%), Query Frame = -3
Query:  258 EEIEKMVQEAEKYKAEDDEHKKKVEAKNALENYAYNMRNTIKDEKISAKLPTADKKKIEDAIEEAIQWLDGNQLAEADEFEDKMKELECICNPIIAKMYQGGGADAGAS 584
            EEI++MV EAEKYK ED++   ++ AKN LE+YAY+++ T  +++   K+  + ++ +  AIEE I WLD NQ A  DE+EDK KELE I N  +  +Y  GG   GA+
Sbjct:  513 EEIDRMVAEAEKYKEEDEKEAARIAAKNGLESYAYSLKQTASEKQFEEKVDASKRESLNKAIEETISWLDNNQSATTDEYEDKRKELEGIANDALKDLYAAGGVPGGAA 621          
BLAST of CB304394 vs. ExPASy Swiss-Prot
Match: HSP74_YEAST (Heat shock protein SSA4 OS=Saccharomyces cerevisiae GN=SSA4 PE=1 SV=3)

HSP 1 Score: 109.768 bits (273), Expect = 1.035e-23
Identity = 47/108 (43.52%), Postives = 76/108 (70.37%), Query Frame = -3
Query:  261 EEIEKMVQEAEKYKAEDDEHKKKVEAKNALENYAYNMRNTIKDEKISAKLPTADKKKIEDAIEEAIQWLDGNQLAEADEFEDKMKELECICNPIIAKMYQGGGADAGA 584
            E+I+KMV EAEK+KAED++  ++V+AKN LE+YA+ ++N++ +     K+   D +K+E A ++AI WLD +Q A  +E++++ KELE + NPI++K Y   G   GA
Sbjct:  511 EDIDKMVAEAEKFKAEDEQEAQRVQAKNQLESYAFTLKNSVSENNFKEKVGEEDARKLEAAAQDAINWLDASQAASTEEYKERQKELEGVANPIMSKFYGAAGGAPGA 618          
BLAST of CB304394 vs. ExPASy Swiss-Prot
Match: HSP72_YEAST (Heat shock protein SSA2 OS=Saccharomyces cerevisiae GN=SSA2 PE=1 SV=3)

HSP 1 Score: 109.383 bits (272), Expect = 1.352e-23
Identity = 52/109 (47.71%), Postives = 76/109 (69.72%), Query Frame = -3
Query:  258 EEIEKMVQEAEKYKAEDDEHKKKVEAKNALENYAYNMRNTIKDEKISAKLPTADKKKIEDAIEEAIQWLDGNQLAEADEFEDKMKELECICNPIIAKMYQGGGADAGAS 584
            E+IEKMV EAEK+K ED++  +++ +KN LE+ AY+++NTI +     KL  ADK  +    EE I WLD N  A  +EF+D++KEL+ + NPI++K+YQ GGA  GA+
Sbjct:  510 EDIEKMVAEAEKFKEEDEKESQRIASKNQLESIAYSLKNTISEA--GDKLEQADKDAVTKKAEETIAWLDSNTTATKEEFDDQLKELQEVANPIMSKLYQAGGAPEGAA 616          
The following BLAST results are available for this feature:
BLAST of CB304394 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 166
Match NameE-valueIdentityDescription
HSP7A_DROME1.223e-2447.57Heat shock 70 kDa protein cognate 1 OS=Drosophila ... [more]
HSP71_YEAST1.223e-2449.54Heat shock protein SSA1 OS=Saccharomyces cerevisia... [more]
HSP76_SAGOE1.597e-2442.20Heat shock 70 kDa protein 6 OS=Saguinus oedipus GN... [more]
HS7C3_DICDI1.597e-2448.51Heat shock cognate 70 kDa protein 3 OS=Dictyosteli... [more]
HSP76_HUMAN2.086e-2443.12Heat shock 70 kDa protein 6 OS=Homo sapiens GN=HSP... [more]
HSP73_YEAST2.724e-2446.43Heat shock protein SSA3 OS=Saccharomyces cerevisia... [more]
GRP78_APLCA2.724e-2450.0078 kDa glucose-regulated protein OS=Aplysia califo... [more]
HSP71_PICAN7.925e-2445.87Heat shock protein 70 1 OS=Pichia angusta GN=HSA1 ... [more]
HSP74_YEAST1.035e-2343.52Heat shock protein SSA4 OS=Saccharomyces cerevisia... [more]
HSP72_YEAST1.352e-2347.71Heat shock protein SSA2 OS=Saccharomyces cerevisia... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0001_IIIaR_B11 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IIIaR_B11 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304394 ID=CB304394; Name=CB304394; organism=Citrus sinensis; type=EST; length=586bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCTGAAGGAAAAATAAGACA
TTGCTTAAAAACATAATATCTTTATGCATACACCAGGAAACAGTATTTAC
ATGTAACAGAAGCAGGAAAAGGAAGAAAAGATCACACCCCCAACTCAACC
CCTAATCATTAAACAACATTAAGCATAAATCCTCAAATTTAATCCACCTC
CTCAATCTTGGGGCCAGCACCGCTACCAGCACCAGCAGAAGGACCATCCT
CATCCATACTTGCACCAGCATCAGCTCCACCTCCTTGGTACATCTTGGCA
ATAATTGGGTTGCAGATGCACTCCAGCTCTTTCATCTTATCTTCAAACTC
ATCTGCCTCTGCGAGCTGGTTCCCGTCAAGCCATTGGATGGCCTCCTCAA
TGGCATCTTCAATTTTCTTCTTGTCAGCAGTGGGAAGCTTTGCGCTGATC
TTTTCATCCTTGATTGTGTTTCTCATGTTGTAAGCATAATTCTCAAGAGC
ATTCTTGGCCTCCACCTTTTTCTTGTGCTCGTCATCCTCGGCCTTGTATT
TTTCTGCCTCTTGTACCATCTTCTCTATCTCCTCCT
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