CB304394

Overview
NameCB304394
Unique NameCB304394
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length586
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13846 contig Csv1_Contig13846:1..560. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304394 vs. ExPASy Swiss-Prot
Match: GRP78_MESAU (78 kDa glucose-regulated protein OS=Mesocricetus auratus GN=HSPA5 PE=1 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 9.688e-22
Identity = 49/104 (47.12%), Postives = 76/104 (73.08%), Query Frame = -3
Query:  276 EEIEKMVQEAEKYKAEDDEHKKKVEAKNALENYAYNMRNTIKD-EKISAKLPTADKKKIEDAIEEAIQWLDGNQLAEADEFEDKMKELECICNPIIAKMYQGGG 584
            EEIE+MV +AEK+  ED + K++++ +N LE+YAY+++N I D EK+  KL + DK+ +E A+EE I+WL+ +Q A+ ++F+ K KELE I  PII+K+Y   G
Sbjct:  536 EEIERMVNDAEKFAEEDKKLKERIDTRNELESYAYSLKNQIGDKEKLGGKLSSEDKETMEKAVEEKIEWLESHQDADIEDFKAKKKELEEIVQPIISKLYGSAG 639          
BLAST of CB304394 vs. ExPASy Swiss-Prot
Match: GRP78_HUMAN (78 kDa glucose-regulated protein OS=Homo sapiens GN=HSPA5 PE=1 SV=2)

HSP 1 Score: 103.219 bits (256), Expect = 9.688e-22
Identity = 49/104 (47.12%), Postives = 76/104 (73.08%), Query Frame = -3
Query:  276 EEIEKMVQEAEKYKAEDDEHKKKVEAKNALENYAYNMRNTIKD-EKISAKLPTADKKKIEDAIEEAIQWLDGNQLAEADEFEDKMKELECICNPIIAKMYQGGG 584
            EEIE+MV +AEK+  ED + K++++ +N LE+YAY+++N I D EK+  KL + DK+ +E A+EE I+WL+ +Q A+ ++F+ K KELE I  PII+K+Y   G
Sbjct:  536 EEIERMVNDAEKFAEEDKKLKERIDTRNELESYAYSLKNQIGDKEKLGGKLSSEDKETMEKAVEEKIEWLESHQDADIEDFKAKKKELEEIVQPIISKLYGSAG 639          
BLAST of CB304394 vs. ExPASy Swiss-Prot
Match: GRP78_BOVIN (78 kDa glucose-regulated protein OS=Bos taurus GN=HSPA5 PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 9.688e-22
Identity = 49/104 (47.12%), Postives = 76/104 (73.08%), Query Frame = -3
Query:  276 EEIEKMVQEAEKYKAEDDEHKKKVEAKNALENYAYNMRNTIKD-EKISAKLPTADKKKIEDAIEEAIQWLDGNQLAEADEFEDKMKELECICNPIIAKMYQGGG 584
            EEIE+MV +AEK+  ED + K++++ +N LE+YAY+++N I D EK+  KL + DK+ +E A+EE I+WL+ +Q A+ ++F+ K KELE I  PII+K+Y   G
Sbjct:  537 EEIERMVNDAEKFAEEDKKLKERIDTRNELESYAYSLKNQIGDKEKLGGKLSSEDKETMEKAVEEKIEWLESHQDADIEDFKAKKKELEEIVQPIISKLYGSAG 640          
BLAST of CB304394 vs. ExPASy Swiss-Prot
Match: GRP78_SPETR (78 kDa glucose-regulated protein OS=Spermophilus tridecemlineatus GN=HSPA5 PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.265e-21
Identity = 49/104 (47.12%), Postives = 75/104 (72.12%), Query Frame = -3
Query:  276 EEIEKMVQEAEKYKAEDDEHKKKVEAKNALENYAYNMRNTIKD-EKISAKLPTADKKKIEDAIEEAIQWLDGNQLAEADEFEDKMKELECICNPIIAKMYQGGG 584
            EEIE+MV +AEK+  ED   K++++ +N LE+YAY+++N I D EK+  KL + DK+ +E A+EE I+WL+ +Q A+ ++F+ K KELE I  PII+K+Y   G
Sbjct:  536 EEIERMVNDAEKFAEEDKRLKERIDTRNELESYAYSLKNQIGDKEKLGGKLSSEDKETMEKAVEEKIEWLESHQDADIEDFKAKKKELEEIVQPIISKLYGSAG 639          
BLAST of CB304394 vs. ExPASy Swiss-Prot
Match: GRP78_PLAFO (78 kDa glucose-regulated protein homolog OS=Plasmodium falciparum (isolate NF54) PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 3.681e-21
Identity = 50/115 (43.48%), Postives = 77/115 (66.96%), Query Frame = -3
Query:  246 EEIEKMVQEAEKYKAEDDEHKKKVEAKNALENYAYNMRNTIKD-EKISAKLPTADKKKIEDAIEEAIQWLDGNQLAEADEFEDKMKELECICNPIIAKMY-QGGGADAGASMDED 584
            E+IEKM+ +AEK+  ED   ++KVEAKN L+NY  +M+ T++D +K++ K+   DK  I  A+++A  WL+ N  A+++  + K+K+LE +C PII K+Y Q GG     S DED
Sbjct:  535 EQIEKMINDAEKFADEDKNLREKVEAKNKLDNYIQSMKATVEDKDKLADKIEKEDKNTILSAVKDAEDWLNNNSNADSEALKQKLKDLEAVCQPIIVKLYGQPGGPSPQPSGDED 649          
BLAST of CB304394 vs. ExPASy Swiss-Prot
Match: HSP71_DROSI (Major heat shock 70 kDa protein Ab OS=Drosophila simulans GN=Hsp70Ab PE=2 SV=2)

HSP 1 Score: 100.908 bits (250), Expect = 4.808e-21
Identity = 48/108 (44.44%), Postives = 75/108 (69.44%), Query Frame = -3
Query:  261 EIEKMVQEAEKYKAEDDEHKKKVEAKNALENYAYNMRNTIKDEKISAKLPTADKKKIEDAIEEAIQWLDGNQLAEADEFEDKMKELECICNPIIAKMY-QGGGADAGA 581
            EI++MV EAEKY  ED++ ++++ ++NALE+Y +N++  + D+  + KL  ADK  + D   + I+WLD N  AE +EF+ K++EL   C+PI+ KM+ QG GA AGA
Sbjct:  512 EIDRMVNEAEKYADEDEKQRQRITSRNALESYVFNVKQAV-DQAPAGKLDEADKNSVLDKCNDTIRWLDSNTTAEKEEFDHKLEELTRHCSPIMTKMHQQGAGAGAGA 618          
BLAST of CB304394 vs. ExPASy Swiss-Prot
Match: HSP71_DROME (Major heat shock 70 kDa protein Ab OS=Drosophila melanogaster GN=Hsp70Ab PE=1 SV=3)

HSP 1 Score: 100.908 bits (250), Expect = 4.808e-21
Identity = 47/107 (43.93%), Postives = 75/107 (70.09%), Query Frame = -3
Query:  264 EIEKMVQEAEKYKAEDDEHKKKVEAKNALENYAYNMRNTIKDEKISAKLPTADKKKIEDAIEEAIQWLDGNQLAEADEFEDKMKELECICNPIIAKMY-QGGGADAG 581
            EI++MV EAEKY  ED++H++++ ++NALE+Y +N++  + ++  + KL  ADK  + D   + I+WLD N  AE +EF+ K++EL   C+PI+ KM+ QG GA AG
Sbjct:  512 EIDRMVNEAEKYADEDEKHRQRITSRNALESYVFNVKQAV-EQAPAGKLDEADKNSVLDKCNDTIRWLDSNTTAEKEEFDHKLEELTRHCSPIMTKMHQQGAGAGAG 617          
BLAST of CB304394 vs. ExPASy Swiss-Prot
Match: HSP70_DROME (Major heat shock 70 kDa protein Aa OS=Drosophila melanogaster GN=Hsp70Aa PE=2 SV=2)

HSP 1 Score: 100.908 bits (250), Expect = 4.808e-21
Identity = 47/107 (43.93%), Postives = 75/107 (70.09%), Query Frame = -3
Query:  264 EIEKMVQEAEKYKAEDDEHKKKVEAKNALENYAYNMRNTIKDEKISAKLPTADKKKIEDAIEEAIQWLDGNQLAEADEFEDKMKELECICNPIIAKMY-QGGGADAG 581
            EI++MV EAEKY  ED++H++++ ++NALE+Y +N++  + ++  + KL  ADK  + D   + I+WLD N  AE +EF+ K++EL   C+PI+ KM+ QG GA AG
Sbjct:  512 EIDRMVNEAEKYADEDEKHRQRITSRNALESYVFNVKQAV-EQAPAGKLDEADKNSVLDKCNDTIRWLDSNTTAEKEEFDHKLEELTRHCSPIMTKMHQQGAGAGAG 617          
BLAST of CB304394 vs. ExPASy Swiss-Prot
Match: GRP78_PLAFA (78 kDa glucose-regulated protein homolog (Fragment) OS=Plasmodium falciparum PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 4.808e-21
Identity = 50/115 (43.48%), Postives = 77/115 (66.96%), Query Frame = -3
Query:  246 EEIEKMVQEAEKYKAEDDEHKKKVEAKNALENYAYNMRNTIKD-EKISAKLPTADKKKIEDAIEEAIQWLDGNQLAEADEFEDKMKELECICNPIIAKMY-QGGGADAGASMDED 584
            E+IEKM+ +AEK+  ED   ++KVEAKN L+NY  +M+ T++D +K++ K+   DK  I  A+++A  WL+ N  A+++  + K+K+LE +C PII K+Y Q GG     S DED
Sbjct:  159 EQIEKMINDAEKFADEDKNLREKVEAKNNLDNYIQSMKATVEDKDKLADKIEKEDKNTILSAVKDAEDWLNNNSNADSEALKQKLKDLEAVCQPIIVKLYGQPGGPSPQPSGDED 273          
BLAST of CB304394 vs. ExPASy Swiss-Prot
Match: HSP74_ANOAL (Heat shock protein 70 B2 OS=Anopheles albimanus GN=HSP70B2 PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.071e-20
Identity = 42/99 (42.42%), Postives = 73/99 (73.74%), Query Frame = -3
Query:  285 EIEKMVQEAEKYKAEDDEHKKKVEAKNALENYAYNMRNTIKDEKISAKLPTADKKKIEDAIEEAIQWLDGNQLAEADEFEDKMKELECICNPIIAKMYQ 581
            +I++MV EAEK++ ED++ ++++ A+N LE Y +N++ ++  E  S KL  AD+K ++D  EE ++W+DGN +A+ +EFE KM+EL   C+PI+ K++Q
Sbjct:  513 DIDRMVSEAEKFREEDEKQRERISARNQLEAYCFNLKQSLDGEGAS-KLSDADRKTVQDRCEETLRWIDGNTMADKEEFEHKMQELTKACSPIMTKLHQ 610          
The following BLAST results are available for this feature:
BLAST of CB304394 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 166
Match NameE-valueIdentityDescription
GRP78_MESAU9.688e-2247.1278 kDa glucose-regulated protein OS=Mesocricetus a... [more]
GRP78_HUMAN9.688e-2247.1278 kDa glucose-regulated protein OS=Homo sapiens G... [more]
GRP78_BOVIN9.688e-2247.1278 kDa glucose-regulated protein OS=Bos taurus GN=... [more]
GRP78_SPETR1.265e-2147.1278 kDa glucose-regulated protein OS=Spermophilus t... [more]
GRP78_PLAFO3.681e-2143.4878 kDa glucose-regulated protein homolog OS=Plasmo... [more]
HSP71_DROSI4.808e-2144.44Major heat shock 70 kDa protein Ab OS=Drosophila s... [more]
HSP71_DROME4.808e-2143.93Major heat shock 70 kDa protein Ab OS=Drosophila m... [more]
HSP70_DROME4.808e-2143.93Major heat shock 70 kDa protein Aa OS=Drosophila m... [more]
GRP78_PLAFA4.808e-2143.4878 kDa glucose-regulated protein homolog (Fragment... [more]
HSP74_ANOAL1.071e-2042.42Heat shock protein 70 B2 OS=Anopheles albimanus GN... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0001_IIIaR_B11 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IIIaR_B11 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304394 ID=CB304394; Name=CB304394; organism=Citrus sinensis; type=EST; length=586bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCTGAAGGAAAAATAAGACA
TTGCTTAAAAACATAATATCTTTATGCATACACCAGGAAACAGTATTTAC
ATGTAACAGAAGCAGGAAAAGGAAGAAAAGATCACACCCCCAACTCAACC
CCTAATCATTAAACAACATTAAGCATAAATCCTCAAATTTAATCCACCTC
CTCAATCTTGGGGCCAGCACCGCTACCAGCACCAGCAGAAGGACCATCCT
CATCCATACTTGCACCAGCATCAGCTCCACCTCCTTGGTACATCTTGGCA
ATAATTGGGTTGCAGATGCACTCCAGCTCTTTCATCTTATCTTCAAACTC
ATCTGCCTCTGCGAGCTGGTTCCCGTCAAGCCATTGGATGGCCTCCTCAA
TGGCATCTTCAATTTTCTTCTTGTCAGCAGTGGGAAGCTTTGCGCTGATC
TTTTCATCCTTGATTGTGTTTCTCATGTTGTAAGCATAATTCTCAAGAGC
ATTCTTGGCCTCCACCTTTTTCTTGTGCTCGTCATCCTCGGCCTTGTATT
TTTCTGCCTCTTGTACCATCTTCTCTATCTCCTCCT
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