CB304419

Overview
NameCB304419
Unique NameCB304419
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length614
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB304419_ssr175 microsatellite CB304419_ssr175:175..192. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig6849 contig Csv1_Contig6849:451..1064. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304419 vs. ExPASy Swiss-Prot
Match: HSP14_SOYBN (17.5 kDa class I heat shock protein OS=Glycine max GN=HSP17.5-E PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 2.899e-35
Identity = 74/115 (64.35%), Postives = 86/115 (74.78%), Query Frame = -3
Query:  268 ETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXKAIEISG 612
            E S F + R+DWKETP+AHVFKAD+PGL+         + R+LQISGER+ E+E+KND WHRVERSSGKF RRFRLP+NAKV +VKASMENGVLTVT           KAIEISG
Sbjct:   40 ENSAFVSTRVDWKETPEAHVFKADIPGLKKEEVKVQIEDDRVLQISGERNVEKEDKNDTWHRVERSSGKFTRRFRLPENAKVNEVKASMENGVLTVTVPKEEVKKPDVKAIEISG 154          
BLAST of CB304419 vs. ExPASy Swiss-Prot
Match: HSP11_CHERU (18.3 kDa class I heat shock protein OS=Chenopodium rubrum GN=HSP18 PE=2 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 3.786e-35
Identity = 68/97 (70.10%), Postives = 84/97 (86.60%), Query Frame = -3
Query:  322 ETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 612
            ET+ FANARIDWKETP+AHVFKADLPG++         +G +L+ISG+R++E+EEKND WHRVERSSG+F+R+FRLP+NAKV+QVKA MENGVLTVT
Sbjct:   48 ETAAFANARIDWKETPEAHVFKADLPGVKKEEVKVEVEDGNVLRISGQRAREKEEKNDTWHRVERSSGQFMRKFRLPENAKVDQVKAGMENGVLTVT 144          
BLAST of CB304419 vs. ExPASy Swiss-Prot
Match: HSP17_ARATH (17.4 kDa class I heat shock protein OS=Arabidopsis thaliana GN=HSP17.4A PE=1 SV=2)

HSP 1 Score: 147.517 bits (371), Expect = 4.944e-35
Identity = 71/115 (61.74%), Postives = 88/115 (76.52%), Query Frame = -3
Query:  268 ETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXKAIEISG 612
            + + F NA++DW+ETP+AHVFKAD+PGL+         +G ILQISGERS E EEK+D WHRVERSSGKF+RRFRLP+NAKVE+VKASMENGVL+VT           K+++ISG
Sbjct:   42 DVAAFTNAKVDWRETPEAHVFKADVPGLKKEEVKVEVEDGNILQISGERSSENEEKSDTWHRVERSSGKFMRRFRLPENAKVEEVKASMENGVLSVTVPKVQESKPEVKSVDISG 156          
BLAST of CB304419 vs. ExPASy Swiss-Prot
Match: HSP11_MEDSA (18.1 kDa class I heat shock protein (Fragment) OS=Medicago sativa GN=HSP18.1 PE=2 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 4.944e-35
Identity = 73/114 (64.04%), Postives = 88/114 (77.19%), Query Frame = -3
Query:  271 ETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXKAIEIS 612
            E S F + RIDWKETP+AHVFKADLPGL+         + R+LQISGER+ E+E+KND+WHRVERSSGKF+RRFRLP+NAK++QVKA+MENGVLTVT           K+IEIS
Sbjct:   29 ENSAFVSTRIDWKETPEAHVFKADLPGLKKEEVKVEIEDDRVLQISGERNVEKEDKNDQWHRVERSSGKFMRRFRLPENAKMDQVKAAMENGVLTVTVPKEEIKKPEVKSIEIS 142          
BLAST of CB304419 vs. ExPASy Swiss-Prot
Match: HSP12_MEDSA (18.2 kDa class I heat shock protein OS=Medicago sativa GN=HSP18.2 PE=2 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 6.458e-35
Identity = 71/115 (61.74%), Postives = 88/115 (76.52%), Query Frame = -3
Query:  268 ETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXKAIEISG 612
            E S F + R+DWKETP+AHVFKADLPG++         + R+LQISGERS E+E+KND+WHR+ERSSGKF+RRFRLP+NAK++QVKA+MENGVLTVT           K I+ISG
Sbjct:   44 ENSAFVSTRVDWKETPEAHVFKADLPGMKKEEVKVEIEDDRVLQISGERSVEKEDKNDQWHRLERSSGKFMRRFRLPENAKMDQVKAAMENGVLTVTVPKEEVKKPEVKTIDISG 158          
BLAST of CB304419 vs. ExPASy Swiss-Prot
Match: HSP15_SOYBN (17.6 kDa class I heat shock protein OS=Glycine max GN=HSP17.6-L PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 5.467e-34
Identity = 72/115 (62.61%), Postives = 84/115 (73.04%), Query Frame = -3
Query:  268 ETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXKAIEISG 612
            E S F N R+DWKET +AHV KAD+PGL+         + R+LQISGER+ E+E+KND WHRV+RSSGKF+RRFRLP+NAKVEQVKA MENGVLTVT           K IEISG
Sbjct:   40 ENSAFVNTRVDWKETQEAHVLKADIPGLKKEEVKVQIEDDRVLQISGERNVEKEDKNDTWHRVDRSSGKFMRRFRLPENAKVEQVKACMENGVLTVTIPKEEVKKSDVKPIEISG 154          
BLAST of CB304419 vs. ExPASy Swiss-Prot
Match: HSP11_HELAN (17.6 kDa class I heat shock protein OS=Helianthus annuus GN=HSP17.6 PE=2 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 7.140e-34
Identity = 67/96 (69.79%), Postives = 80/96 (83.33%), Query Frame = -3
Query:  325 ETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTV 612
            ET+   NARIDWKETP+AHV KADLPG++         +GR+LQISGER +EQEEK+D WHRVERSSGKF+RRFRLP+NAK+++VKA MENGVLTV
Sbjct:   38 ETAAIVNARIDWKETPEAHVLKADLPGMKKEEVKVEVEDGRVLQISGERCREQEEKDDTWHRVERSSGKFIRRFRLPENAKMDEVKAMMENGVLTV 133          
BLAST of CB304419 vs. ExPASy Swiss-Prot
Match: HS17B_ARATH (17.6 kDa class I heat shock protein 2 OS=Arabidopsis thaliana GN=HSP17.6B PE=2 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 2.297e-32
Identity = 69/115 (60.00%), Postives = 84/115 (73.04%), Query Frame = -3
Query:  268 ETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXKAIEISG 612
            E S   NAR+DW+ETP+AHVFKADLPGL+         E  +L+ISGER  E+E+KND WHRVERSSG+F RRFRLP+N K++QVKA+MENGVLTVT           K+I+ISG
Sbjct:   39 ENSAIVNARVDWRETPEAHVFKADLPGLKKEEVKVEIEEDSVLKISGERHVEKEDKNDTWHRVERSSGQFTRRFRLPENVKMDQVKAAMENGVLTVTVPKAETKKADVKSIQISG 153          
BLAST of CB304419 vs. ExPASy Swiss-Prot
Match: HS178_ARATH (17.8 kDa class I heat shock protein OS=Arabidopsis thaliana GN=HSP17.8 PE=2 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 2.808e-30
Identity = 62/97 (63.92%), Postives = 76/97 (78.35%), Query Frame = -3
Query:  322 ETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 612
            ETS   NAR+DWKET +AHVFKADLPG++         +  +L+ISGER  E+EEK D WHRVERSSG+F R+F+LP+N K++QVKASMENGVLTVT
Sbjct:   41 ETSAITNARVDWKETAEAHVFKADLPGMKKEEVKVEIEDDSVLKISGERHVEKEEKQDTWHRVERSSGQFSRKFKLPENVKMDQVKASMENGVLTVT 137          
BLAST of CB304419 vs. ExPASy Swiss-Prot
Match: HS17A_ARATH (17.6 kDa class I heat shock protein 1 OS=Arabidopsis thaliana GN=HSP17.6A PE=1 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.067e-29
Identity = 62/96 (64.58%), Postives = 75/96 (78.12%), Query Frame = -3
Query:  322 TSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 609
            +S  ANAR+DWKET +AHVFKADLPG++         +  +L+ISGER  E+EEK D WHRVERSSG F R+FRLP+N K++QVKASMENGVLTVT
Sbjct:   40 SSAIANARVDWKETAEAHVFKADLPGMKKEEVKVEIEDDSVLKISGERHVEKEEKQDTWHRVERSSGGFSRKFRLPENVKMDQVKASMENGVLTVT 135          
The following BLAST results are available for this feature:
BLAST of CB304419 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
HSP14_SOYBN2.899e-3564.3517.5 kDa class I heat shock protein OS=Glycine max... [more]
HSP11_CHERU3.786e-3570.1018.3 kDa class I heat shock protein OS=Chenopodium... [more]
HSP17_ARATH4.944e-3561.7417.4 kDa class I heat shock protein OS=Arabidopsis... [more]
HSP11_MEDSA4.944e-3564.0418.1 kDa class I heat shock protein (Fragment) OS=... [more]
HSP12_MEDSA6.458e-3561.7418.2 kDa class I heat shock protein OS=Medicago sa... [more]
HSP15_SOYBN5.467e-3462.6117.6 kDa class I heat shock protein OS=Glycine max... [more]
HSP11_HELAN7.140e-3469.7917.6 kDa class I heat shock protein OS=Helianthus ... [more]
HS17B_ARATH2.297e-3260.0017.6 kDa class I heat shock protein 2 OS=Arabidops... [more]
HS178_ARATH2.808e-3063.9217.8 kDa class I heat shock protein OS=Arabidopsis... [more]
HS17A_ARATH1.067e-2964.5817.6 kDa class I heat shock protein 1 OS=Arabidops... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionFLAVEDO0001_IIIaR_E10 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IIIaR_E10 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304419 ID=CB304419; Name=CB304419; organism=Citrus sinensis; type=EST; length=614bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTCGGCATTACAAAATATATTTT
ATTGCACCACACTTTTATCATTTAAAAAACTAGTTACAACGCTTGAGACT
GGCTCCTGAAGCTCTTGCAAACACACAAACATAATCACATCAAATTAAAC
AGGGGGGAAGGGAAGCCCTTGCAAACACACACACACACACACAAGGGCTT
TGCTTTCGTACCAAATTTATTAGCAAACCAAAGACACAATCTTGAAAACA
TTTACACTTATCACTTAGCCAGAGATCTCAATGGCCTTAACTTCAGGTTT
CTTCTCCTCCTGTTTAGGAACAGTCACTGTGAGCACACCATTCTCCATGC
TGGCCTTAACCTGCTCCACCTTAGCATTGTCGGGCAACCTGAACCTCCTC
AGGAACTTGCCACTGCTCCTCTCGACGCGATGCCACTTGTCATTCTTCTC
TTCCTGCTCCTTGCTCCTCTCCCCGCTTATCTGCAGAATCCTGCCCTCTT
CAACCTCAACTTTCACTTCTTCTTTCCTCAGCCCTGGAAGATCAGCCTTG
AATACATGAGCCTGAGGAGTCTCTTTCCAGTCAATTCTTGCATTGGCGAA
TTGGGATGTTTCCC
back to top