CB304419

Overview
NameCB304419
Unique NameCB304419
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length614
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB304419_ssr175 microsatellite CB304419_ssr175:175..192. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig6849 contig Csv1_Contig6849:451..1064. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304419 vs. ExPASy Swiss-Prot
Match: HSP22_MAIZE (17.8 kDa class II heat shock protein OS=Zea mays PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.266e-14
Identity = 41/87 (47.13%), Postives = 56/87 (64.37%), Query Frame = -3
Query:  322 DWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 582
            D KE P A+ F  D+PGL          + R+L +SGER +E+ E + K+ R+ER  GKF+R+F LPDNA V++V A   +GVLTVT
Sbjct:   58 DVKELPGAYAFVVDMPGLGTGDIRVQVEDERVLVVSGERRREEREDDAKYLRMERRMGKFMRKFVLPDNADVDKVAAVCRDGVLTVT 144          
BLAST of CB304419 vs. ExPASy Swiss-Prot
Match: HSP21_SOLPE (17.3 kDa class II heat shock protein OS=Solanum peruvianum PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.654e-14
Identity = 39/87 (44.83%), Postives = 57/87 (65.52%), Query Frame = -3
Query:  322 DWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 582
            D KE P ++VF  D+PGL+         E  +L ISGER +E+E++  K+ R+ER  GKF+R+F LP+NA  + + A  ++GVLTVT
Sbjct:   49 DVKEYPNSYVFVVDMPGLKSGDIKVQVEEDNVLLISGERKREEEKEGAKFIRMERRVGKFMRKFSLPENANTDAISAVCQDGVLTVT 135          
BLAST of CB304419 vs. ExPASy Swiss-Prot
Match: HSP21_PEA (17.1 kDa class II heat shock protein OS=Pisum sativum GN=HSP17.7 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.400e-13
Identity = 36/87 (41.38%), Postives = 57/87 (65.52%), Query Frame = -3
Query:  322 DWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 582
            D KE P ++VF  D+PG++         +  +L ISGER +E+E++  K+ ++ER  GK +R+F LP+NA +E + A  ++GVLTVT
Sbjct:   46 DVKEHPNSYVFMVDMPGVKSGDIKVQVEDENVLLISGERKREEEKEGVKYLKMERRIGKLMRKFVLPENANIEAISAISQDGVLTVT 132          
BLAST of CB304419 vs. ExPASy Swiss-Prot
Match: HSP21_HELAN (17.9 kDa class II heat shock protein OS=Helianthus annuus GN=HSP17.9 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.400e-13
Identity = 35/87 (40.23%), Postives = 58/87 (66.67%), Query Frame = -3
Query:  322 DWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 582
            D KE P ++VF  D+PGL+            +L ISG+R++E+E++  K+ R+ER  GKF+++F LP++A  +++ A  ++GVLTVT
Sbjct:   54 DVKECPNSYVFIVDMPGLKSGDIKVQVERDNVLVISGKRNREEEKEGVKYVRMERRMGKFMKKFALPEDANTDKISAICQDGVLTVT 140          
BLAST of CB304419 vs. ExPASy Swiss-Prot
Match: HSP18_ORYSJ (18.0 kDa class II heat shock protein OS=Oryza sativa subsp. japonica GN=HSP18.0 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.828e-13
Identity = 41/91 (45.05%), Postives = 60/91 (65.93%), Query Frame = -3
Query:  322 DWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSK----EQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 582
            D K+ P A+ F  D+PGL+         E R+L ISGER +    E++E++ K+ R+ER  GKF+R+F LPDNA V+++ A  ++GVLTVT
Sbjct:   56 DVKDLPGAYAFVVDMPGLKSSDIKVQVEEERLLVISGERRRGGGEEEKEESCKYLRMERRMGKFMRKFVLPDNADVDKISAVCQDGVLTVT 146          
BLAST of CB304419 vs. ExPASy Swiss-Prot
Match: HSP21_IPONI (17.2 kDa class II heat shock protein OS=Ipomoea nil GN=SHSP-1 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.119e-13
Identity = 40/88 (45.45%), Postives = 55/88 (62.50%), Query Frame = -3
Query:  322 DWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKND-KWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 582
            D KE P ++VF  D+PGL+            +L ISGER +E EEK   K+ R+ER  GK +R+F LP+NA  E++ A  ++GVLTVT
Sbjct:   48 DVKEYPNSYVFIIDMPGLKSGDIKVQVDGDNVLSISGERKREAEEKEGAKYVRMERRVGKLMRKFVLPENANKEKITAVCQDGVLTVT 135          
BLAST of CB304419 vs. ExPASy Swiss-Prot
Match: HSP21_MAIZE (17.5 kDa class II heat shock protein OS=Zea mays PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.073e-13
Identity = 40/87 (45.98%), Postives = 56/87 (64.37%), Query Frame = -3
Query:  322 DWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 582
            D KE P A+ F  D+PGL          + R+L ISGER +E+ E + K+ R+ER  GKF+R+F LPDNA ++++ A   +GVLTVT
Sbjct:   56 DVKELPGAYAFVVDMPGLGTGDIKVQVEDERVLVISGERRREERE-DAKYLRMERRMGKFMRKFVLPDNADMDKISAVCRDGVLTVT 141          
BLAST of CB304419 vs. ExPASy Swiss-Prot
Match: HS178_ORYSJ (17.8 kDa heat shock protein OS=Oryza sativa subsp. japonica GN=HSP17.8 PE=2 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 5.320e-13
Identity = 43/111 (38.74%), Postives = 64/111 (57.66%), Query Frame = -3
Query:  322 ANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQI--------------SGERSKEQEEKND--KWHRVERSSGK---FLRRFRLPDNAKVEQVKASMENGVLTVT 597
            A   +DW+ETP AHVF+ DLPGL          +G IL++              +G+ S E+EE+ND  +WH  ER++G+    + +FRLP++A  ++  A M +GVLTVT
Sbjct:   25 ARPPMDWRETPVAHVFEMDLPGLAKDQVAVEVVDGHILRVRAGGEHEDANNAAKAGKASGEEEEENDGVRWHCRERAAGRRRAAVTQFRLPEDAAADEASARMADGVLTVT 135          
BLAST of CB304419 vs. ExPASy Swiss-Prot
Match: HSP22_IPONI (18.8 kDa class II heat shock protein OS=Ipomoea nil GN=SHSP-2 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 6.948e-13
Identity = 37/89 (41.57%), Postives = 59/89 (66.29%), Query Frame = -3
Query:  322 DWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKND--KWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 582
            D KE P ++VF AD+PG++         +  +L +SGER++ ++++ D  K+ R+ER  GKF+R+F LP+NA VE + A  ++GVL VT
Sbjct:   59 DVKEYPNSYVFIADMPGVKAAEIKVQVEDDNVLVVSGERTEREKDEKDGVKYLRMERRVGKFMRKFVLPENANVEAINAVYQDGVLQVT 147          
BLAST of CB304419 vs. ExPASy Swiss-Prot
Match: HSP23_MAIZE (17.0 kDa class II heat shock protein OS=Zea mays GN=HSP18 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.185e-12
Identity = 41/87 (47.13%), Postives = 55/87 (63.22%), Query Frame = -3
Query:  322 DWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 582
            D KE   A+ F  D+PGL          + R+L ISGER +E+ E + K+ R+ER  GKF+R+F LPDNA V++V A   +GVLTVT
Sbjct:   49 DVKELAGAYAFVVDMPGLSTGDIRVQVEDERVLVISGERRREERE-DAKYLRMERRMGKFMRKFVLPDNADVDKVAAVCRDGVLTVT 134          
The following BLAST results are available for this feature:
BLAST of CB304419 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
HSP22_MAIZE1.266e-1447.1317.8 kDa class II heat shock protein OS=Zea mays P... [more]
HSP21_SOLPE1.654e-1444.8317.3 kDa class II heat shock protein OS=Solanum pe... [more]
HSP21_PEA1.400e-1341.3817.1 kDa class II heat shock protein OS=Pisum sati... [more]
HSP21_HELAN1.400e-1340.2317.9 kDa class II heat shock protein OS=Helianthus... [more]
HSP18_ORYSJ1.828e-1345.0518.0 kDa class II heat shock protein OS=Oryza sati... [more]
HSP21_IPONI3.119e-1345.4517.2 kDa class II heat shock protein OS=Ipomoea ni... [more]
HSP21_MAIZE4.073e-1345.9817.5 kDa class II heat shock protein OS=Zea mays P... [more]
HS178_ORYSJ5.320e-1338.7417.8 kDa heat shock protein OS=Oryza sativa subsp.... [more]
HSP22_IPONI6.948e-1341.5718.8 kDa class II heat shock protein OS=Ipomoea ni... [more]
HSP23_MAIZE1.185e-1247.1317.0 kDa class II heat shock protein OS=Zea mays G... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0001_IIIaR_E10 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IIIaR_E10 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304419 ID=CB304419; Name=CB304419; organism=Citrus sinensis; type=EST; length=614bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTCGGCATTACAAAATATATTTT
ATTGCACCACACTTTTATCATTTAAAAAACTAGTTACAACGCTTGAGACT
GGCTCCTGAAGCTCTTGCAAACACACAAACATAATCACATCAAATTAAAC
AGGGGGGAAGGGAAGCCCTTGCAAACACACACACACACACACAAGGGCTT
TGCTTTCGTACCAAATTTATTAGCAAACCAAAGACACAATCTTGAAAACA
TTTACACTTATCACTTAGCCAGAGATCTCAATGGCCTTAACTTCAGGTTT
CTTCTCCTCCTGTTTAGGAACAGTCACTGTGAGCACACCATTCTCCATGC
TGGCCTTAACCTGCTCCACCTTAGCATTGTCGGGCAACCTGAACCTCCTC
AGGAACTTGCCACTGCTCCTCTCGACGCGATGCCACTTGTCATTCTTCTC
TTCCTGCTCCTTGCTCCTCTCCCCGCTTATCTGCAGAATCCTGCCCTCTT
CAACCTCAACTTTCACTTCTTCTTTCCTCAGCCCTGGAAGATCAGCCTTG
AATACATGAGCCTGAGGAGTCTCTTTCCAGTCAATTCTTGCATTGGCGAA
TTGGGATGTTTCCC
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