CB304421

Overview
NameCB304421
Unique NameCB304421
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length568
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CB304421 vs. ExPASy Swiss-Prot
Match: MIF_PIG (Macrophage migration inhibitory factor OS=Sus scrofa GN=MIF PE=1 SV=3)

HSP 1 Score: 74.7146 bits (182), Expect = 3.527e-13
Identity = 39/115 (33.91%), Postives = 59/115 (51.30%), Query Frame = -1 
Query:  215 MPCLNISTNVKLDGVDTSSILSEATSTVANIIGKPEAYVMIVLKGSVPMSFGGTEDPAAYGELVSIGGLNPDVNKKLSAAIFAILEKKLSVPKSRFFIKFYDTKGSNFGWNGSPF 559
            MP   ++TNV    V     LSE T  +   +GKP  Y+ + +     M+FGG+ +P A   L SIG +    N+  S  +  +L ++L +   R +I +YD   +N GWNGS F
Sbjct:    1 MPMFVVNTNVPRASVP-DGFLSELTQQLVQAMGKPAQYIAVHVVPDQLMAFGGSSEPCALCSLHSIGKIGGAQNRSYSKLLCGLLAERLRISPDRIYINYYDMNAANVGWNGSTF 114
[Close]
BLAST of CB304421 vs. ExPASy Swiss-Prot
Match: MIF_SHEEP (Macrophage migration inhibitory factor OS=Ovis aries GN=MIF PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 6.016e-13
Identity = 40/115 (34.78%), Postives = 59/115 (51.30%), Query Frame = -1 
Query:  215 MPCLNISTNVKLDGVDTSSILSEATSTVANIIGKPEAYVMIVLKGSVPMSFGGTEDPAAYGELVSIGGLNPDVNKKLSAAIFAILEKKLSVPKSRFFIKFYDTKGSNFGWNGSPF 559
            MP   ++TNV    V    +LSE T  +A   GKP  Y+ + +     M+FGG+ +P A   L SIG +    N+  S  +  +L ++L +   R +I F D   +N GWNGS F
Sbjct:    1 MPMFVVNTNVPRASVP-DGLLSELTQQLAQATGKPAQYIAVHVVPDQLMTFGGSSEPCALCSLHSIGKIGGAQNRSYSKLLCGLLTERLRISPDRIYINFCDMNAANVGWNGSTF 114
[Close]
BLAST of CB304421 vs. ExPASy Swiss-Prot
Match: MIF_BOVIN (Macrophage migration inhibitory factor OS=Bos taurus GN=MIF PE=1 SV=6)

HSP 1 Score: 73.9442 bits (180), Expect = 6.016e-13
Identity = 40/115 (34.78%), Postives = 59/115 (51.30%), Query Frame = -1 
Query:  215 MPCLNISTNVKLDGVDTSSILSEATSTVANIIGKPEAYVMIVLKGSVPMSFGGTEDPAAYGELVSIGGLNPDVNKKLSAAIFAILEKKLSVPKSRFFIKFYDTKGSNFGWNGSPF 559
            MP   ++TNV    V    +LSE T  +A   GKP  Y+ + +     M+FGG+ +P A   L SIG +    N+  S  +  +L ++L +   R +I F D   +N GWNGS F
Sbjct:    1 MPMFVVNTNVPRASVP-DGLLSELTQQLAQATGKPAQYIAVHVVPDQLMTFGGSSEPCALCSLHSIGKIGGAQNRSYSKLLCGLLTERLRISPDRIYINFCDMNAANVGWNGSTF 114
[Close]
BLAST of CB304421 vs. ExPASy Swiss-Prot
Match: MIF_MACMU (Macrophage migration inhibitory factor OS=Macaca mulatta GN=MIF PE=3 SV=4)

HSP 1 Score: 72.7886 bits (177), Expect = 1.340e-12
Identity = 39/115 (33.91%), Postives = 58/115 (50.43%), Query Frame = -1 
Query:  215 MPCLNISTNVKLDGVDTSSILSEATSTVANIIGKPEAYVMIVLKGSVPMSFGGTEDPAAYGELVSIGGLNPDVNKKLSAAIFAILEKKLSVPKSRFFIKFYDTKGSNFGWNGSPF 559
            MP   ++TNV    V     LSE T  +A   GKP  Y+ + +     M+FGG+ +P A   L SIG +    N+  S  +  +L ++L +   R +I +YD   +N GWN S F
Sbjct:    1 MPMFIVNTNVPRASVP-DGFLSELTQQLAQATGKPPQYIAVHVVPDQLMAFGGSSEPCALCSLHSIGKIGGAQNRSYSKLLCGLLAERLRISPDRVYINYYDMNAANVGWNNSTF 114
[Close]
BLAST of CB304421 vs. ExPASy Swiss-Prot
Match: MIF_MACFA (Macrophage migration inhibitory factor OS=Macaca fascicularis GN=MIF PE=3 SV=3)

HSP 1 Score: 72.7886 bits (177), Expect = 1.340e-12
Identity = 39/115 (33.91%), Postives = 58/115 (50.43%), Query Frame = -1 
Query:  215 MPCLNISTNVKLDGVDTSSILSEATSTVANIIGKPEAYVMIVLKGSVPMSFGGTEDPAAYGELVSIGGLNPDVNKKLSAAIFAILEKKLSVPKSRFFIKFYDTKGSNFGWNGSPF 559
            MP   ++TNV    V     LSE T  +A   GKP  Y+ + +     M+FGG+ +P A   L SIG +    N+  S  +  +L ++L +   R +I +YD   +N GWN S F
Sbjct:    1 MPMFIVNTNVPRASVP-DGFLSELTQQLAQATGKPPQYIAVHVVPDQLMAFGGSSEPCALCSLHSIGKIGGAQNRSYSKLLCGLLAERLRISPDRVYINYYDMNAANVGWNNSTF 114
[Close]
BLAST of CB304421 vs. ExPASy Swiss-Prot
Match: MIF_HUMAN (Macrophage migration inhibitory factor OS=Homo sapiens GN=MIF PE=1 SV=4)

HSP 1 Score: 72.7886 bits (177), Expect = 1.340e-12
Identity = 39/115 (33.91%), Postives = 58/115 (50.43%), Query Frame = -1 
Query:  215 MPCLNISTNVKLDGVDTSSILSEATSTVANIIGKPEAYVMIVLKGSVPMSFGGTEDPAAYGELVSIGGLNPDVNKKLSAAIFAILEKKLSVPKSRFFIKFYDTKGSNFGWNGSPF 559
            MP   ++TNV    V     LSE T  +A   GKP  Y+ + +     M+FGG+ +P A   L SIG +    N+  S  +  +L ++L +   R +I +YD   +N GWN S F
Sbjct:    1 MPMFIVNTNVPRASVP-DGFLSELTQQLAQATGKPPQYIAVHVVPDQLMAFGGSSEPCALCSLHSIGKIGGAQNRSYSKLLCGLLAERLRISPDRVYINYYDMNAANVGWNNSTF 114
The following BLAST results are available for this feature:
BLAST of CB304421 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
MIF_PIG3.527e-1333.91Macrophage migration inhibitory factor OS=Sus scro... [more]
MIF_SHEEP6.016e-1334.78Macrophage migration inhibitory factor OS=Ovis ari... [more]
MIF_BOVIN6.016e-1334.78Macrophage migration inhibitory factor OS=Bos taur... [more]
MIF_MACMU1.340e-1233.91Macrophage migration inhibitory factor OS=Macaca m... [more]
MIF_MACFA1.340e-1233.91Macrophage migration inhibitory factor OS=Macaca f... [more]
MIF_HUMAN1.340e-1233.91Macrophage migration inhibitory factor OS=Homo sap... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0001_IIIaR_E12 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IIIaR_E12 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304421 ID=CB304421; Name=CB304421; organism=Citrus sinensis; type=EST; length=568bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTCGTCCATAAACCAAACAGTTC
CTATTCCACAATATTGTTGGCTAGCACCAACGAGAAGAAAACACATCATA
GGAGAAATTACACAATATTCAGCCAATTATTAACATAGTTCTAAAGATTG
TAATCACCATATAGATAAGACAATTGTCAAAGTTCATGGCGCCATGCTCT
GAGAATAATATCTAGAAGGGGGATCCATTCCATCCAAAGTTTGAACCCTT
TGTGTCATAAAACTTGATGAAAAATCGTGACTTGGGTACCGACAGCTTCT
TTTCAAGAATTGCAAAAATTGCAGCACTCAGCTTCTTGTTCACATCAGGG
TTAAGGCCACCAATGGACACCAACTCACCATAAGCTGCCGGATCCTCAGT
TCCACCAAACGACATAGGTACCGATCCCTTCAACACAATCATCACGTAGG
CCTCGGGTTTGCCGATGATGTTGGCGACAGTGGAGGTGGCCTCGGAGAGG
ATGGATGACGTGTCAACGCCATCGAGTTTGACGTTAGTTGAAATGTTCAA
GCAAGGCATCTTCTCCCC
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