CB304428

Overview
NameCB304428
Unique NameCB304428
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length665
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB304428 vs. ExPASy Swiss-Prot
Match: NLTP1_PRUPE (Non-specific lipid-transfer protein 1 OS=Prunus persica PE=1 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 5.598e-30
Identity = 59/92 (64.13%), Postives = 73/92 (79.35%), Query Frame = -1
Query:  252 ITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 527
            ITCGQV+ +LAPCI ++R GG  PP  CCNG+R++N  ARTTPDRQAACNCLKQ   S+PG+N N AA LP +CGV IPYKIS +T+C+ V+
Sbjct:    1 ITCGQVSSALAPCIPYVRGGGAVPPA-CCNGIRNVNNLARTTPDRQAACNCLKQLSASVPGVNPNNAAALPGKCGVHIPYKISASTNCATVK 91          
BLAST of CB304428 vs. ExPASy Swiss-Prot
Match: NLTP1_SOLLC (Non-specific lipid-transfer protein 1 OS=Solanum lycopersicum GN=TSW12 PE=2 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 7.312e-30
Identity = 62/111 (55.86%), Postives = 80/111 (72.07%), Query Frame = -1
Query:  252 KLVCASLLCILVTAPVTNAITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 584
            K+ C  LLC++V AP   A+TCGQVT  LAPC+ +L+  GR P   CC GV++L G+A+TT DR+ AC CLK A  +I GI+ N AAG+P  C V+IPYKISP+TDCS V+
Sbjct:    6 KIACFVLLCMVVVAPHAEALTCGQVTAGLAPCLPYLQ--GRGPLGGCCGGVKNLLGSAKTTADRKTACTCLKSAANAIKGIDLNKAAGIPSVCKVNIPYKISPSTDCSTVQ 114          
BLAST of CB304428 vs. ExPASy Swiss-Prot
Match: NLTP_PYRCO (Non-specific lipid-transfer protein OS=Pyrus communis PE=1 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 9.550e-30
Identity = 60/114 (52.63%), Postives = 83/114 (72.81%), Query Frame = -1
Query:  252 AALKLVCASLLCILVTAPVTNAITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 593
            A +KL     LC+ V+  V +AITC QV+ +LAPCI ++R+GG  PP  CCNG++++NG A+TTPDRQAACNCLK    S+ G+N   A  LP +CGV++PYKIS +T+C+ V+
Sbjct:    5 AVIKLALVVALCMAVS--VAHAITCSQVSANLAPCINYVRSGGAVPPA-CCNGIKTINGLAKTTPDRQAACNCLKNLAGSVSGVNPGNAESLPGKCGVNVPYKISTSTNCATVK 115          
BLAST of CB304428 vs. ExPASy Swiss-Prot
Match: NLTP1_SOLPN (Non-specific lipid-transfer protein 1 OS=Solanum pennellii GN=LTP1 PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 9.550e-30
Identity = 62/111 (55.86%), Postives = 79/111 (71.17%), Query Frame = -1
Query:  252 KLVCASLLCILVTAPVTNAITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 584
            K+ C  LLC++V AP   A+TCGQVT  LAPC+ +L+  GR P   CC GV+ L G+A+TT DR+ AC CLK A  +I GI+ N AAG+P  C V+IPYKISP+TDCS V+
Sbjct:    6 KIACFVLLCMVVVAPHAEALTCGQVTAGLAPCLPYLQ--GRGPLGGCCGGVKGLLGSAKTTADRKTACTCLKSAANAIKGIDLNKAAGIPSVCKVNIPYKISPSTDCSTVQ 114          
BLAST of CB304428 vs. ExPASy Swiss-Prot
Match: NLTP_SPIOL (Non-specific lipid-transfer protein OS=Spinacia oleracea PE=1 SV=2)

HSP 1 Score: 129.798 bits (325), Expect = 1.247e-29
Identity = 65/114 (57.02%), Postives = 78/114 (68.42%), Query Frame = -1
Query:  255 AALKLVCASLLCILVTAPVTNA-ITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRV 593
            A +KL CA LLCI+V AP   A ITCG V+  LAPCI +L+ G       CC G+++LN AA TTPDR+ ACNCLK A  +I GIN   AAGLP  CGV IPY ISP+T+C+ V
Sbjct:    5 AVIKLACAVLLCIVVAAPYAEAGITCGMVSSKLAPCIGYLKGGPL--GGGCCGGIKALNAAAATTPDRKTACNCLKSAANAIKGINYGKAAGLPGMCGVHIPYAISPSTNCNAV 116          
BLAST of CB304428 vs. ExPASy Swiss-Prot
Match: NLTP5_LENCU (Non-specific lipid-transfer protein 5 OS=Lens culinaris PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.247e-29
Identity = 62/114 (54.39%), Postives = 81/114 (71.05%), Query Frame = -1
Query:  252 ALKLVCASLLCILVTAPVTN-AITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 590
            ++KL C  L+  ++ AP+   AI+CG VTG L+PC+ +L TGG  P P CC GV+ L  AA TTPDRQAACNC+K A  SI  +N N AA LP +CGV+IPYKIS +T+C+ V+
Sbjct:    4 SMKLACVVLVMCMIVAPMAEGAISCGAVTGDLSPCLTYL-TGGPGPSPQCCGGVKKLLAAANTTPDRQAACNCMKSAASSITKLNTNNAAALPGKCGVNIPYKISTSTNCNTVK 116          
BLAST of CB304428 vs. ExPASy Swiss-Prot
Match: NLTP2_SORBI (Non-specific lipid-transfer protein 2 OS=Sorghum bicolor GN=LTP2 PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.247e-29
Identity = 61/115 (53.04%), Postives = 78/115 (67.83%), Query Frame = -1
Query:  255 LMAALKLVCASLLCILVTAPVTNAITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRV 599
            L  A+ +V A+   +L       A+TCGQV+ ++ PC+++ R  G  P   CC+GVRSLN AARTT DR+AACNCLK A R I G+N   AA +P +CGVSIPY IS +TDCSRV
Sbjct:    7 LAVAIAVVAAAAAVVLAATTSEAAVTCGQVSSAIGPCLSYARGQGSGPSAGCCSGVRSLNSAARTTADRRAACNCLKNAARGIRGLNVGKAASIPSKCGVSIPYTISTSTDCSRV 121          
BLAST of CB304428 vs. ExPASy Swiss-Prot
Match: NLTP_DAUCA (Non-specific lipid-transfer protein OS=Daucus carota GN=EP2 PE=2 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 2.779e-29
Identity = 61/103 (59.22%), Postives = 75/103 (72.82%), Query Frame = -1
Query:  255 ILVTAPVTNAI-TCGQVTGSLAPCIAFLRTGGRFPPP-PCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRV 557
            +L T P   A+ TCGQVTG+LAPC+ +LR+    P P  CCN VR LN AARTT D++ AC CLKQ   ++ G+N N AAGLP +CGV+IPYKISP TDC+RV
Sbjct:   17 VLATTPNAEAVLTCGQVTGALAPCLGYLRSQVNVPVPLTCCNVVRGLNNAARTTLDKRTACGCLKQTANAVTGLNLNAAAGLPARCGVNIPYKISPTTDCNRV 119          
BLAST of CB304428 vs. ExPASy Swiss-Prot
Match: NLTP_MAIZE (Non-specific lipid-transfer protein OS=Zea mays PE=1 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 8.084e-29
Identity = 61/113 (53.98%), Postives = 81/113 (71.68%), Query Frame = -1
Query:  255 LKLVCASLLCILVTAPVTN--AITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRV 587
            L +V  +++ +++ A  T+  AI+CGQV  ++APCI++ R  G  P   CC+GVRSLN AARTT DR+AACNCLK A   + G+NA  AA +P +CGVSIPY IS +TDCSRV
Sbjct:    7 LAVVATAVVALVLLAAATSEAAISCGQVASAIAPCISYARGQGSGPSAGCCSGVRSLNNAARTTADRRAACNCLKNAAAGVSGLNAGNAASIPSKCGVSIPYTISTSTDCSRV 119          
BLAST of CB304428 vs. ExPASy Swiss-Prot
Match: NLTP6_LENCU (Non-specific lipid-transfer protein 6 OS=Lens culinaris PE=1 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 8.084e-29
Identity = 64/114 (56.14%), Postives = 80/114 (70.18%), Query Frame = -1
Query:  252 LKLVCASL-LCILVTAPVTN-AITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 587
            +KL C  L +C++V AP+   AI+CG VT  L+PC+ +L TGG  P P CC GV+ L  AA TTPDRQAACNCLK A  SI  +N N AA LP +CGV IPYKIS +T+C+ V+
Sbjct:    5 MKLACVVLVMCMVVIAPMAEGAISCGAVTSDLSPCLTYL-TGGPGPSPQCCGGVKKLLAAANTTPDRQAACNCLKSAAGSITKLNTNNAAALPGKCGVDIPYKISTSTNCNTVK 117          
The following BLAST results are available for this feature:
BLAST of CB304428 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 81
Match NameE-valueIdentityDescription
NLTP1_PRUPE5.598e-3064.13Non-specific lipid-transfer protein 1 OS=Prunus pe... [more]
NLTP1_SOLLC7.312e-3055.86Non-specific lipid-transfer protein 1 OS=Solanum l... [more]
NLTP_PYRCO9.550e-3052.63Non-specific lipid-transfer protein OS=Pyrus commu... [more]
NLTP1_SOLPN9.550e-3055.86Non-specific lipid-transfer protein 1 OS=Solanum p... [more]
NLTP_SPIOL1.247e-2957.02Non-specific lipid-transfer protein OS=Spinacia ol... [more]
NLTP5_LENCU1.247e-2954.39Non-specific lipid-transfer protein 5 OS=Lens culi... [more]
NLTP2_SORBI1.247e-2953.04Non-specific lipid-transfer protein 2 OS=Sorghum b... [more]
NLTP_DAUCA2.779e-2959.22Non-specific lipid-transfer protein OS=Daucus caro... [more]
NLTP_MAIZE8.084e-2953.98Non-specific lipid-transfer protein OS=Zea mays PE... [more]
NLTP6_LENCU8.084e-2956.14Non-specific lipid-transfer protein 6 OS=Lens culi... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0001_IIIaR_F10 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IIIaR_F10 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304428 ID=CB304428; Name=CB304428; organism=Citrus sinensis; type=EST; length=665bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCGATAATACCACAAAATAA
CTAGAATTAATCACTCAAAACACAGATCACGTTTACATATTTAATATGAT
ATTAAAAGCAAAGATACAAACATGACATGAGAGTGAGACTCACACAAGTG
GAGACTCGTTCGGACAAAGAAATTAACATATATATTCTTTATCTATTTAT
TCTTCTCAGTCAATCATACTTGGAAAGTCACAGAGCTCAAACTCAACTTC
ACCTGACCCTAGAGCAGTCAGTGTTGGGGCTGATCTTGTAAGGAATGCTG
ACTCCACATTGACGAGGAAGGCCAGCGGCAACATTAGCGTTGATGCCGGG
GATTGATCGGTAAGCTTGCTTCAAGCAGTTGCATGCAGCTTGGCGGTCAG
GGGTGGTTCTGGCGGCGCCGTTGAGAGACCTGACGCCGTTACAGCATGGG
GGTGGAGGAAAACGCCCTCCAGTTCTCAAGAAAGCGATGCATGGAGCCAA
GGAGCCTGTCACCTGCCCACATGTTATGGCATTAGTCACTGGGGCAGTCA
CCAGAATGCACAAAAGCGAAGCACAAACAAGCTTAAGAGCAGCCATGAGG
ATTTTTCAGGGAGGCTTTTGCTTGGTTATAGCTAGTTATCAGGTTCTGTT
TACAAGCTTGAGTCC
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