CB304428

Overview
NameCB304428
Unique NameCB304428
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length665
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB304428 vs. ExPASy Swiss-Prot
Match: NLTP2_LENCU (Non-specific lipid-transfer protein 2 OS=Lens culinaris PE=1 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 8.084e-29
Identity = 64/114 (56.14%), Postives = 80/114 (70.18%), Query Frame = -1
Query:  252 LKLVCASL-LCILVTAPVTN-AITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 587
            +KL C  L +C++V AP+   AI+CG VT  L+PC+ +L TGG  P P CC GV+ L  AA TTPDRQAACNCLK A  SI  +N N AA LP +CGV+IPYKIS  T+C+ V+
Sbjct:    5 MKLACVVLVICMVVIAPMAEGAISCGAVTSDLSPCLTYL-TGGPGPSPQCCGGVKKLLAAANTTPDRQAACNCLKSAAGSITKLNTNNAAALPGKCGVNIPYKISTTTNCNTVK 117          
BLAST of CB304428 vs. ExPASy Swiss-Prot
Match: NLTP1_PRUAR (Non-specific lipid-transfer protein 1 OS=Prunus armeniaca PE=1 SV=2)

HSP 1 Score: 127.102 bits (318), Expect = 8.084e-29
Identity = 58/92 (63.04%), Postives = 72/92 (78.26%), Query Frame = -1
Query:  252 ITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 527
            ITCGQV+ SLAPCI ++R GG  PP  CCNG+R++N  ARTTPDR+ ACNCLKQ   SI G+N N AA LP +CGV+IPYKIS +T+C+ V+
Sbjct:    1 ITCGQVSSSLAPCIGYVRGGGAVPPA-CCNGIRNVNNLARTTPDRRTACNCLKQLSGSISGVNPNNAAALPGKCGVNIPYKISASTNCATVK 91          
BLAST of CB304428 vs. ExPASy Swiss-Prot
Match: NLTP_GERHY (Non-specific lipid-transfer protein OS=Gerbera hybrida PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.379e-28
Identity = 57/111 (51.35%), Postives = 75/111 (67.57%), Query Frame = -1
Query:  255 LKLVCASLLCILVTAPVTNAITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRV 587
            + ++C ++ C++ +A   +AI+CGQVT  L PC  +L  GG  PP  CCNGVR LN AA+TTPDRQ AC CLK    +   IN N A  LP +CG+SI YKI+PN DCS++
Sbjct:    6 MNVLCVAVACMVFSASYADAISCGQVTSGLVPCFGYLAAGGPVPPA-CCNGVRGLNNAAKTTPDRQTACGCLKGILAANTRINLNNANSLPGKCGISIGYKITPNIDCSKI 115          
BLAST of CB304428 vs. ExPASy Swiss-Prot
Match: NLTP1_ARATH (Non-specific lipid-transfer protein 1 OS=Arabidopsis thaliana GN=LTP1 PE=1 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.379e-28
Identity = 59/119 (49.58%), Postives = 84/119 (70.59%), Query Frame = -1
Query:  252 LMAALKLVCASLLCILVTAPVTN--AITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSI-PGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 599
            +   +KL C  L C++V  P+T+  A++CG V  +LA CI ++  GG  PP  CC+GV++LN  A+TTPDRQ ACNC++ A R++  G+NA  AAG+P+ CGV+IPYKIS +T+C  VR
Sbjct:    1 MAGVMKLACLLLACMIVAGPITSNAALSCGSVNSNLAACIGYVLQGGVIPPA-CCSGVKNLNSIAKTTPDRQQACNCIQGAARALGSGLNAGRAAGIPKACGVNIPYKISTSTNCKTVR 118          
BLAST of CB304428 vs. ExPASy Swiss-Prot
Match: NLTP2_TOBAC (Non-specific lipid-transfer protein 2 OS=Nicotiana tabacum PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.352e-28
Identity = 59/111 (53.15%), Postives = 78/111 (70.27%), Query Frame = -1
Query:  252 KLVCASLLCILVTAPVTNAITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 584
            K+ C  +LC++V AP   A++CGQV   LAPC+ +L+  GR P   CC GV+ L GAA++  DR+ AC CLK A  +I GI+   AAGLP  CGV+IPYKISP+TDCS+V+
Sbjct:    6 KIACFVVLCMVVVAPHAEALSCGQVQSGLAPCLPYLQ--GRGPLGSCCGGVKGLLGAAKSLSDRKTACTCLKSAANAIKGIDMGKAAGLPGACGVNIPYKISPSTDCSKVQ 114          
BLAST of CB304428 vs. ExPASy Swiss-Prot
Match: NLTP2_SOLPN (Non-specific lipid-transfer protein 2 OS=Solanum pennellii GN=LTP2 PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.072e-28
Identity = 60/111 (54.05%), Postives = 75/111 (67.57%), Query Frame = -1
Query:  252 KLVCASLLCILVTAPVTNAITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 584
            K+ C  LLC++V AP   A+TCGQVT +LAPC+ +L   G  P   CC GV+ L G A+TT DRQ AC CLK A  S  G++   AA LP  C V+IPYKISP+TDCS+V+
Sbjct:    6 KIACFVLLCMVVVAPHAEALTCGQVTSTLAPCLPYLMNRG--PLGGCCGGVKGLLGQAQTTVDRQTACTCLKSAASSFTGLDLGKAASLPSTCSVNIPYKISPSTDCSKVQ 114          
BLAST of CB304428 vs. ExPASy Swiss-Prot
Match: NLTP2_BRANA (Non-specific lipid-transfer protein 2 OS=Brassica napus GN=LTP2 PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.072e-28
Identity = 61/114 (53.51%), Postives = 78/114 (68.42%), Query Frame = -1
Query:  252 LKLVCASLLCILVTAPVTN--AITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 587
            +KL C  L C++V  P+T+  A++CG V+G +APCI +L   G  P   CC GV +LN  ARTTPDRQ AC CL  A  S P +NA  AAGLP+ CGV+IPYKIS +T+C+ VR
Sbjct:    5 MKLACLVLACMIVAGPITSNAALSCGTVSGYVAPCIGYLTQNGPLPRG-CCTGVTNLNNMARTTPDRQQACRCLVGAANSFPTLNAARAAGLPKACGVNIPYKISKSTNCNSVR 117          
BLAST of CB304428 vs. ExPASy Swiss-Prot
Match: NLTP1_SORBI (Non-specific lipid-transfer protein 1 OS=Sorghum bicolor GN=LTP1 PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.072e-28
Identity = 60/114 (52.63%), Postives = 79/114 (69.30%), Query Frame = -1
Query:  255 MAALKLVCASLLCILVTAPVTNAITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRV 596
            +A    V A+++ +L       AI+CGQV+ ++A C+++ R  G  P   CC+GVRSLN AARTT DR+AACNCLK A R I G+NA  AA +P +CGVS+PY IS +TDCSRV
Sbjct:    4 LAVAIAVVAAVVVVLAATTSEAAISCGQVSSAIALCLSYARGQGFAPSAGCCSGVRSLNSAARTTADRRAACNCLKNAARGISGLNAGNAASIPSKCGVSVPYTISTSTDCSRV 117          
BLAST of CB304428 vs. ExPASy Swiss-Prot
Match: NLTP1_PRUDO (Non-specific lipid-transfer protein 1 OS=Prunus domestica PE=1 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.072e-28
Identity = 56/92 (60.87%), Postives = 73/92 (79.35%), Query Frame = -1
Query:  252 ITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 527
            ITCGQV+ +LAPCI +++ GG  PP  CCNG+R++N  ARTT DR+AACNCLKQ   SIPG+N N AA LP +CGV++PYKIS +T+C+ V+
Sbjct:    1 ITCGQVSSNLAPCINYVKGGGAVPPA-CCNGIRNVNNLARTTADRRAACNCLKQLSGSIPGVNPNNAAALPGKCGVNVPYKISASTNCATVK 91          
BLAST of CB304428 vs. ExPASy Swiss-Prot
Match: NLTP2_SOLLC (Non-specific lipid-transfer protein 2 OS=Solanum lycopersicum GN=LE16 PE=2 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 4.012e-28
Identity = 59/111 (53.15%), Postives = 76/111 (68.47%), Query Frame = -1
Query:  252 KLVCASLLCILVTAPVTNAITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 584
            K+ C  + C++V AP   +++CG+VT  LAPC+ +L   GR P   CC GV+ L GAA+T  DR+ AC CLK A  SI GI+   AAGLP  CGV+IPYKISP+TDCS V+
Sbjct:    6 KIACFVVFCMVVVAPHAESLSCGEVTSGLAPCLPYLE--GRGPLGGCCGGVKGLLGAAKTPEDRKTACTCLKSAANSIKGIDTGKAAGLPGVCGVNIPYKISPSTDCSTVQ 114          
The following BLAST results are available for this feature:
BLAST of CB304428 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 81
Match NameE-valueIdentityDescription
NLTP2_LENCU8.084e-2956.14Non-specific lipid-transfer protein 2 OS=Lens culi... [more]
NLTP1_PRUAR8.084e-2963.04Non-specific lipid-transfer protein 1 OS=Prunus ar... [more]
NLTP_GERHY1.379e-2851.35Non-specific lipid-transfer protein OS=Gerbera hyb... [more]
NLTP1_ARATH1.379e-2849.58Non-specific lipid-transfer protein 1 OS=Arabidops... [more]
NLTP2_TOBAC2.352e-2853.15Non-specific lipid-transfer protein 2 OS=Nicotiana... [more]
NLTP2_SOLPN3.072e-2854.05Non-specific lipid-transfer protein 2 OS=Solanum p... [more]
NLTP2_BRANA3.072e-2853.51Non-specific lipid-transfer protein 2 OS=Brassica ... [more]
NLTP1_SORBI3.072e-2852.63Non-specific lipid-transfer protein 1 OS=Sorghum b... [more]
NLTP1_PRUDO3.072e-2860.87Non-specific lipid-transfer protein 1 OS=Prunus do... [more]
NLTP2_SOLLC4.012e-2853.15Non-specific lipid-transfer protein 2 OS=Solanum l... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0001_IIIaR_F10 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IIIaR_F10 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304428 ID=CB304428; Name=CB304428; organism=Citrus sinensis; type=EST; length=665bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCGATAATACCACAAAATAA
CTAGAATTAATCACTCAAAACACAGATCACGTTTACATATTTAATATGAT
ATTAAAAGCAAAGATACAAACATGACATGAGAGTGAGACTCACACAAGTG
GAGACTCGTTCGGACAAAGAAATTAACATATATATTCTTTATCTATTTAT
TCTTCTCAGTCAATCATACTTGGAAAGTCACAGAGCTCAAACTCAACTTC
ACCTGACCCTAGAGCAGTCAGTGTTGGGGCTGATCTTGTAAGGAATGCTG
ACTCCACATTGACGAGGAAGGCCAGCGGCAACATTAGCGTTGATGCCGGG
GATTGATCGGTAAGCTTGCTTCAAGCAGTTGCATGCAGCTTGGCGGTCAG
GGGTGGTTCTGGCGGCGCCGTTGAGAGACCTGACGCCGTTACAGCATGGG
GGTGGAGGAAAACGCCCTCCAGTTCTCAAGAAAGCGATGCATGGAGCCAA
GGAGCCTGTCACCTGCCCACATGTTATGGCATTAGTCACTGGGGCAGTCA
CCAGAATGCACAAAAGCGAAGCACAAACAAGCTTAAGAGCAGCCATGAGG
ATTTTTCAGGGAGGCTTTTGCTTGGTTATAGCTAGTTATCAGGTTCTGTT
TACAAGCTTGAGTCC
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