CB304428

Overview
NameCB304428
Unique NameCB304428
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length665
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2668 contig Csv1_Contig2668:153..817. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304428 vs. ExPASy Swiss-Prot
Match: NLT42_HORVU (Non-specific lipid-transfer protein 4.2 OS=Hordeum vulgare GN=LTP4.2 PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 4.905e-26
Identity = 54/114 (47.37%), Postives = 78/114 (68.42%), Query Frame = -1
Query:  252 AALKLVCASLLCILVTAPVTNAITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 593
            AA +LV  +++  ++      AI+CGQV+ +L+PCI++ R  G  PP  CC+GV+ L GAA++T D+QAAC C+K A     G+NA  AAG+P  CGVS+PY IS + DCS++R
Sbjct:    5 AATQLVLVAMVAAMLIVATDAAISCGQVSSALSPCISYARGNGAKPPVACCSGVKRLAGAAQSTADKQAACKCIKSA---AGGLNAGKAAGIPSMCGVSVPYAISASVDCSKIR 115          
BLAST of CB304428 vs. ExPASy Swiss-Prot
Match: NLTP4_ORYSJ (Non-specific lipid-transfer protein 4 OS=Oryza sativa subsp. japonica GN=Os12g0114500 PE=3 SV=2)

HSP 1 Score: 117.472 bits (293), Expect = 6.405e-26
Identity = 53/104 (50.96%), Postives = 71/104 (68.27%), Query Frame = -1
Query:  255 LLCILVTAPVTNAITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRV 566
            ++ +L+ AP  +A+TCGQV   LAPCI +       P   CC+GVR+LN AA TT DRQ  C CLKQ   ++ G+  ++ AG+P +CGV+IPY ISP+TDCSRV
Sbjct:   15 VVALLLAAPAASAVTCGQVVSMLAPCIMYATGRVSAPTGGCCDGVRTLNSAAATTADRQTTCACLKQQTSAMGGLRPDLVAGIPSKCGVNIPYAISPSTDCSRV 118          
BLAST of CB304428 vs. ExPASy Swiss-Prot
Match: SCA_LILLO (Stigma/stylar cysteine-rich adhesin OS=Lilium longiflorum GN=SCA PE=1 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.427e-25
Identity = 58/115 (50.43%), Postives = 71/115 (61.74%), Query Frame = -1
Query:  252 MAALKLVCASLLCILVTAPVTNAITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 596
            MA    VC  LL   +     +AITCGQV   L  C+ + R GG  PP  CC GVR+LN  A+TTPDRQ ACNCLK       G+NA + AG+P +CGV+IPY I   TDC++VR
Sbjct:    1 MARSSAVCFLLLLAFLIG-TASAITCGQVDSDLTSCLGYARKGGVIPPG-CCAGVRTLNNLAKTTPDRQTACNCLKSLVNPSLGLNAAIVAGIPGKCGVNIPYPIRMQTDCNKVR 113          
BLAST of CB304428 vs. ExPASy Swiss-Prot
Match: NLTP3_LENCU (Non-specific lipid-transfer protein 3 OS=Lens culinaris PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.427e-25
Identity = 59/115 (51.30%), Postives = 78/115 (67.83%), Query Frame = -1
Query:  252 ALKLVCASL-LCILVTAPVTNA-ITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 590
            ++ L C +L +C++V AP+  A ++CG VTG LAPCI +L TGG  P   CC GV+ L  AA TT DRQAACNCLK A  +I  +N   AA LP +C V+IPYKIS  T+C+ ++
Sbjct:    4 SMNLACVALVMCMVVIAPMAEAAVSCGTVTGDLAPCIPYL-TGGAGPTDSCCAGVKKLLAAAPTTADRQAACNCLKTAAGNINNLNPGNAAALPGKCNVNIPYKISTTTNCNTIK 117          
BLAST of CB304428 vs. ExPASy Swiss-Prot
Match: NLTP2_ARATH (Non-specific lipid-transfer protein 2 OS=Arabidopsis thaliana GN=LTP2 PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 9.250e-25
Identity = 59/119 (49.58%), Postives = 78/119 (65.55%), Query Frame = -1
Query:  252 LMAALKLVCASLLCILVTAPVT-NAI-TCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSI-PGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 599
            +   +KL C  L C++V  P+T NA+ +CG V G+LA CIA+L  G       CCNGV +L   A TTPDRQ AC CL+ A +++ PG+N   AAGLP  C V+IPYKIS +T+C+ VR
Sbjct:    1 MAGVMKLACMVLACMIVAGPITANALMSCGTVNGNLAGCIAYLTRGAPLTQG-CCNGVTNLKNMASTTPDRQQACRCLQSAAKAVGPGLNTARAAGLPSACKVNIPYKISASTNCNTVR 118          
BLAST of CB304428 vs. ExPASy Swiss-Prot
Match: NLTP7_ARATH (Non-specific lipid-transfer protein 7 OS=Arabidopsis thaliana GN=LTP7 PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.744e-23
Identity = 54/115 (46.96%), Postives = 75/115 (65.22%), Query Frame = -1
Query:  261 LKLVCASLLCILVTAPVTN--AITCGQVTGSLAPCIAFLRTGG-RFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSI-PGINANVAAGLPRQCGVSIPY--KISPNTDCS 587
            +KL C   + ++   P+T   A++CG+V  +L PC  +L  GG   P P CCNGVR LNG   TT DR+ AC C+K A R++ PG+NA+ AAG+PR+CG+ IPY  +I  NT C+
Sbjct:    5 MKLGCLVFVFVIAAGPITAKAALSCGEVNSNLKPCTGYLTNGGITSPGPQCCNGVRKLNGMVLTTLDRRQACRCIKNAARNVGPGLNADRAAGIPRRCGIKIPYSTQIRFNTKCN 119          
BLAST of CB304428 vs. ExPASy Swiss-Prot
Match: NLTP5_VITSX (Non-specific lipid-transfer protein P5 OS=Vitis sp. PE=1 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.744e-23
Identity = 50/91 (54.95%), Postives = 66/91 (72.53%), Query Frame = -1
Query:  255 ITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRV 527
            ++CG V   LAPCI +LR+ G  P   CCNGV++L  +A TT DR+ AC CL  A +SI G+N  +AAGLP +CGV+IPYKISP+T+C +V
Sbjct:    1 LSCGDVATQLAPCINYLRSAGPLPVA-CCNGVKNLKNSAATTQDRRTACKCLINASKSISGVNFGLAAGLPGKCGVNIPYKISPSTNCDQV 90          
BLAST of CB304428 vs. ExPASy Swiss-Prot
Match: NLTP_ELECO (Non-specific lipid-transfer protein OS=Eleusine coracana PE=1 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 3.886e-23
Identity = 51/93 (54.84%), Postives = 66/93 (70.97%), Query Frame = -1
Query:  255 AITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNC-LKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRV 530
            AI+CGQV+ ++ PC+A+ R  G  P   C +GVRSLN AARTT DR+AACNC LK A   + G+NA  A+ +P +CGV +PY IS + DCSRV
Sbjct:    1 AISCGQVSSAIGPCLAYARGAGAAPSASCQSGVRSLNAAARTTADRRAACNCSLKSAASRVSGLNAGKASSIPGRCGVRLPYAISASIDCSRV 93          
BLAST of CB304428 vs. ExPASy Swiss-Prot
Match: NLTP8_HORVU (Non-specific lipid-transfer protein Cw18 OS=Hordeum vulgare GN=CW18 PE=1 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.075e-23
Identity = 53/114 (46.49%), Postives = 72/114 (63.16%), Query Frame = -1
Query:  255 AALKLVCASLLCILVTAPVTNAITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPG-INANVAAGLPRQCGVSIPYKISPNTDCSRV 593
            AA KL   +L+  ++      AITCGQV+ +L PC A+ +  G  P   CC+GV+ L G AR+T D+QA C CLK    S+ G  NA  AAG+P +CGVS+PY IS + DCS++
Sbjct:    5 AATKLALVALVAAMLLVAADAAITCGQVSSALGPCAAYAKGSGTSPSAGCCSGVKRLAGLARSTADKQATCRCLK----SVAGAYNAGRAAGIPSRCGVSVPYTISASVDCSKI 114          
BLAST of CB304428 vs. ExPASy Swiss-Prot
Match: NLTP1_PHAAU (Non-specific lipid-transfer protein 1 OS=Phaseolus aureus PE=1 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 6.629e-23
Identity = 49/91 (53.85%), Postives = 67/91 (73.63%), Query Frame = -1
Query:  255 ITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRV 527
            +TCGQV G+LA CI FL+ GG   PP CC GV+++  ++RTT DR+A C+CLK A  ++ GIN N A  LP +CGV+IPYKIS +T+C+ +
Sbjct:    1 MTCGQVQGNLAQCIGFLQKGG-VVPPSCCTGVKNILNSSRTTADRRAVCSCLKAAAGAVRGINPNNAEALPGKCGVNIPYKISTSTNCNSI 90          
The following BLAST results are available for this feature:
BLAST of CB304428 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 81
Match NameE-valueIdentityDescription
NLT42_HORVU4.905e-2647.37Non-specific lipid-transfer protein 4.2 OS=Hordeum... [more]
NLTP4_ORYSJ6.405e-2650.96Non-specific lipid-transfer protein 4 OS=Oryza sat... [more]
SCA_LILLO1.427e-2550.43Stigma/stylar cysteine-rich adhesin OS=Lilium long... [more]
NLTP3_LENCU1.427e-2551.30Non-specific lipid-transfer protein 3 OS=Lens culi... [more]
NLTP2_ARATH9.250e-2549.58Non-specific lipid-transfer protein 2 OS=Arabidops... [more]
NLTP7_ARATH1.744e-2346.96Non-specific lipid-transfer protein 7 OS=Arabidops... [more]
NLTP5_VITSX1.744e-2354.95Non-specific lipid-transfer protein P5 OS=Vitis sp... [more]
NLTP_ELECO3.886e-2354.84Non-specific lipid-transfer protein OS=Eleusine co... [more]
NLTP8_HORVU5.075e-2346.49Non-specific lipid-transfer protein Cw18 OS=Hordeu... [more]
NLTP1_PHAAU6.629e-2353.85Non-specific lipid-transfer protein 1 OS=Phaseolus... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0001_IIIaR_F10 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IIIaR_F10 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304428 ID=CB304428; Name=CB304428; organism=Citrus sinensis; type=EST; length=665bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCGATAATACCACAAAATAA
CTAGAATTAATCACTCAAAACACAGATCACGTTTACATATTTAATATGAT
ATTAAAAGCAAAGATACAAACATGACATGAGAGTGAGACTCACACAAGTG
GAGACTCGTTCGGACAAAGAAATTAACATATATATTCTTTATCTATTTAT
TCTTCTCAGTCAATCATACTTGGAAAGTCACAGAGCTCAAACTCAACTTC
ACCTGACCCTAGAGCAGTCAGTGTTGGGGCTGATCTTGTAAGGAATGCTG
ACTCCACATTGACGAGGAAGGCCAGCGGCAACATTAGCGTTGATGCCGGG
GATTGATCGGTAAGCTTGCTTCAAGCAGTTGCATGCAGCTTGGCGGTCAG
GGGTGGTTCTGGCGGCGCCGTTGAGAGACCTGACGCCGTTACAGCATGGG
GGTGGAGGAAAACGCCCTCCAGTTCTCAAGAAAGCGATGCATGGAGCCAA
GGAGCCTGTCACCTGCCCACATGTTATGGCATTAGTCACTGGGGCAGTCA
CCAGAATGCACAAAAGCGAAGCACAAACAAGCTTAAGAGCAGCCATGAGG
ATTTTTCAGGGAGGCTTTTGCTTGGTTATAGCTAGTTATCAGGTTCTGTT
TACAAGCTTGAGTCC
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