CB304430

Overview
NameCB304430
Unique NameCB304430
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length638
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11660 contig Csv1_Contig11660:121..758. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CB304430 vs. ExPASy Swiss-Prot
Match: ERH_ECHMU (Enhancer of rudimentary homolog OS=Echinococcus multilocularis GN=ERH PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.066e-14
Identity = 32/84 (38.10%), Postives = 55/84 (65.48%), Query Frame = -3 
Query:  376 TRTFMDYGSISQAMDGICGLYERKLKELNPAIRDITYDVADLYNFIDGLADMSALVYDHSIQAYLPYDRQWIKQRTFQHLKKLA 627
            +R + DY +++Q ++G+C +YE +LK+ NP    ITYD++ L+ FID LAD+S L +  +   Y+P+ + WIK+  +  L+  A
Sbjct:   17 SRVWADYETLNQCLEGVCKIYEEQLKQQNPTAPTITYDISQLFKFIDQLADLSCLEFHPATGTYVPHTKDWIKENIYALLRNQA 100
[Close]
BLAST of CB304430 vs. ExPASy Swiss-Prot
Match: ERH_CAEEL (Enhancer of rudimentary homolog OS=Caenorhabditis elegans GN=T21C9.4 PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 5.782e-13
Identity = 30/78 (38.46%), Postives = 56/78 (71.79%), Query Frame = -3 
Query:  394 TRTFMDYGSISQAMDGICGLYERKLKELNPAIRDITYDVADLYNFIDGLADMSALVYDHSIQAYLPYDRQWIKQRTFQ 627
            +R++ DY + ++ ++GIC +YE  LK+  PA  +ITYD++ L+ FID L D+S LV D++   Y+P+++Q++K+  ++
Sbjct:   16 SRSWSDYENTTECLEGICRVYEEYLKKKVPAQNEITYDISHLFEFIDDLKDLSMLVLDNTTYTYVPHNKQYVKESIYK 93
The following BLAST results are available for this feature:
BLAST of CB304430 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
ERH_ECHMU3.066e-1438.10Enhancer of rudimentary homolog OS=Echinococcus mu... [more]
ERH_CAEEL5.782e-1338.46Enhancer of rudimentary homolog OS=Caenorhabditis ... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0001_IIIaR_F12 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IIIaR_F12 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304430 ID=CB304430; Name=CB304430; organism=Citrus sinensis; type=EST; length=638bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTAACAATCTAGCAATCAAG
TTACACATCATATATATAGTTCCATATCAAATGTCAGAAACTTTTTAGAT
TTGCGCGCTCTCTGGCTATGACGCGTCAGCTTACATTGGACCAATAACTA
TCGATAAAACTGTTCTTCAATAAATCTCCCTTCCTGTGACACAGGAAGCA
CAGGAAGAGAATATGATTGCCACATTCCGCAATCTTCTGCCCAAGGGCAA
AACCAAAATAAGACTCTGATTCTACAATTTGTTTACATCTTCCGACTACC
ATGTTCAGGGCCAGAGAGAAATTAGGAAACAACAAAACACTGGCGTGGCT
GAATATAATAAGTATTTATTCAATGCGCCAACTTCTTAAGATGTTGAAAT
GTCCTTTGTTTGATCCACTGTCTGTCATACGGCAAATAAGCCTGAATTGA
GTGATCGTATACTAATGCACTCATGTCTGCAAGACCATCAATGAAGTTGT
AGAGATCTGCAACATCATAAGTGATGTCTCTGATTGCTGGATTTAACTCC
TTAAGCTTCCTTTCATAAAGTCCACATATACCATCCATAGCTTGGCTTAT
TGAACCATAATCCATGAAGGTTCTTGTTGCTCTGCTTG
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