CB304433

Overview
NameCB304433
Unique NameCB304433
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length595
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6745 contig Csv1_Contig6745:432..1026. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304433 vs. ExPASy Swiss-Prot
Match: HUB1_DEBHA (Ubiquitin-like modifier HUB1 OS=Debaryomyces hansenii GN=HUB1 PE=4 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 3.229e-20
Identity = 44/73 (60.27%), Postives = 56/73 (76.71%), Query Frame = -3
Query:  321 MIEVVLNDRLGKKVRVKCNEDDPIGDLKKLVAAQTGTRADKIRIQKWYNIYKDHITLKDYEIQDGMGLELYYS 539
            MIEV+ NDRLGKK++VKC   D IGDLKK+++ Q GT  +KI ++K Y +YKDHITL DYE+ +G   ELYYS
Sbjct:    1 MIEVLANDRLGKKIKVKCMPTDTIGDLKKIISLQIGTSYEKIVLKKGYQVYKDHITLDDYEVHNGFNFELYYS 73          
BLAST of CB304433 vs. ExPASy Swiss-Prot
Match: HUB1_CANGA (Ubiquitin-like modifier HUB1 OS=Candida glabrata GN=HUB1 PE=4 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.093e-19
Identity = 44/73 (60.27%), Postives = 56/73 (76.71%), Query Frame = -3
Query:  321 MIEVVLNDRLGKKVRVKCNEDDPIGDLKKLVAAQTGTRADKIRIQKWYNIYKDHITLKDYEIQDGMGLELYYS 539
            MIEV++NDRLGKK+RVKC EDD +GD KK+++ Q G +  KI +QK  ++ KDHITL DYE+ D   LELYYS
Sbjct:    1 MIEVLVNDRLGKKIRVKCLEDDTVGDFKKVLSVQLGMQPSKIVLQKGGSVLKDHITLYDYEVHDNTNLELYYS 73          
BLAST of CB304433 vs. ExPASy Swiss-Prot
Match: HUB1_YEAST (Ubiquitin-like modifier HUB1 OS=Saccharomyces cerevisiae GN=HUB1 PE=1 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 1.357e-18
Identity = 43/72 (59.72%), Postives = 57/72 (79.17%), Query Frame = -3
Query:  324 MIEVVLNDRLGKKVRVKCNEDDPIGDLKKLVAAQTGTRADKIRIQKWYNIYKDHITLKDYEIQDGMGLELYY 539
            MIEVV+NDRLGKKVRVKC  +D +GD KK+++ Q GT+ +KI +QK  ++ KDHI+L+DYE+ D   LELYY
Sbjct:    1 MIEVVVNDRLGKKVRVKCLAEDSVGDFKKVLSLQIGTQPNKIVLQKGGSVLKDHISLEDYEVHDQTNLELYY 72          
BLAST of CB304433 vs. ExPASy Swiss-Prot
Match: HUB1_KLULA (Ubiquitin-like modifier HUB1 OS=Kluyveromyces lactis GN=HUB1 PE=4 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 3.947e-18
Identity = 44/73 (60.27%), Postives = 56/73 (76.71%), Query Frame = -3
Query:  324 MIEVVLNDRLGKKVRVKCNEDDPIGDLKKLVAAQTGT-RADKIRIQKWYNIYKDHITLKDYEIQDGMGLELYY 539
            MIEV++NDRLGKKV VKC  +D +GD KK+++ Q GT  A KI +QK  ++ KDHITL+DYE+ DG  LELYY
Sbjct:    1 MIEVLVNDRLGKKVNVKCLSEDTVGDFKKVLSVQLGTASASKIVLQKGGSVLKDHITLEDYEVHDGTNLELYY 73          
BLAST of CB304433 vs. ExPASy Swiss-Prot
Match: UBL5_DICDI (Ubiquitin-like protein 5 OS=Dictyostelium discoideum GN=ubl5 PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 1.959e-17
Identity = 48/87 (55.17%), Postives = 58/87 (66.67%), Query Frame = -3
Query:  321 MIEVVLNDRLGKKVRVKCNEDDPIGDLKKLVAAQTGTRADKIRIQKWYNIYKDHITLKD--------------YEIQDGMGLELYYS 539
            MIEVV NDRLG KVRVK N DD IGDLKK+++AQ G +A+KIR+QK Y+I+KD     +              YEI DG GLELYY+
Sbjct:    1 MIEVVCNDRLGNKVRVKVNSDDTIGDLKKVLSAQIGIKAEKIRLQKSYSIFKDRNNNNNYNNYNNNNNNYYYYYEIHDGDGLELYYN 87          
BLAST of CB304433 vs. ExPASy Swiss-Prot
Match: HUB1_ASHGO (Ubiquitin-like modifier HUB1 OS=Ashbya gossypii GN=HUB1 PE=4 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 5.700e-17
Identity = 42/72 (58.33%), Postives = 52/72 (72.22%), Query Frame = -3
Query:  324 MIEVVLNDRLGKKVRVKCNEDDPIGDLKKLVAAQTGTRADKIRIQKWYNIYKDHITLKDYEIQDGMGLELYY 539
            MIEV++NDRLGKK+RVKC   D +GDLKK++A Q GT   K+ + K     KDHI+L DYE+ DG  LELYY
Sbjct:    1 MIEVIVNDRLGKKLRVKCLSTDSVGDLKKVLAVQLGTAHGKVALHKGGVNLKDHISLDDYEVHDGTYLELYY 72          
The following BLAST results are available for this feature:
BLAST of CB304433 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
HUB1_DEBHA3.229e-2060.27Ubiquitin-like modifier HUB1 OS=Debaryomyces hanse... [more]
HUB1_CANGA2.093e-1960.27Ubiquitin-like modifier HUB1 OS=Candida glabrata G... [more]
HUB1_YEAST1.357e-1859.72Ubiquitin-like modifier HUB1 OS=Saccharomyces cere... [more]
HUB1_KLULA3.947e-1860.27Ubiquitin-like modifier HUB1 OS=Kluyveromyces lact... [more]
UBL5_DICDI1.959e-1755.17Ubiquitin-like protein 5 OS=Dictyostelium discoide... [more]
HUB1_ASHGO5.700e-1758.33Ubiquitin-like modifier HUB1 OS=Ashbya gossypii GN... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0001_IIIaR_G08 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IIIaR_G08 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304433 ID=CB304433; Name=CB304433; organism=Citrus sinensis; type=EST; length=595bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCGCCAAGGTATTCACAAAA
TTCTATCAGCCTAATGGACTGACAAGTATGTGGGACCTCAATACCTTGAT
AAAGATCTAAACACCATTCAAAATGGAGAGTAAGTCCAGATCCCAGATAT
GTTACATAACCACAAATAAGTTTTTACAAGTCTTCACAAATCTTTTCTTA
CAAGACAGTATTAATAAAGTTGGCCCTGCCGCATCTTCCAATACTCCTTG
CTTATTATGGCATATGGTTCCTAGTAGTATTGACTGCTTGCAACAGCATA
TATATTTAACGGTGGATTTAGCTGTAATAAAGTTCGAGGCCCATGCCGTC
CTGAATCTCGTAGTCCTTGAGAGTGATGTGGTCCTTGTAGATGTTGTACC
ACTTCTGAATCCGAATCTTGTCGGCTCGAGTCCCGGTCTGAGCCGCCACC
AGCTTCTTCAAGTCGCCTATGGGGTCGTCTTCGTTGCACTTCACGCGCAC
CTTCTTCCCGAGCCTGTCGTTCAGCACCACCTCAATCATCTTTGTCTCCT
GTTTTGATTTTCCCTGCCGAATGATTTGGGATTTTCTCGTTTCCC
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