CB304433

Overview
NameCB304433
Unique NameCB304433
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length595
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6745 contig Csv1_Contig6745:432..1026. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304433 vs. ExPASy Swiss-Prot
Match: UBL5_ARATH (Ubiquitin-like protein 5 OS=Arabidopsis thaliana GN=UBL5 PE=1 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 8.753e-34
Identity = 68/73 (93.15%), Postives = 71/73 (97.26%), Query Frame = -3
Query:  321 MIEVVLNDRLGKKVRVKCNEDDPIGDLKKLVAAQTGTRADKIRIQKWYNIYKDHITLKDYEIQDGMGLELYYS 539
            MIEVVLNDRLGKKVRVKCN+DD IGDLKKLVAAQTGTRA+KIRIQKWYNIYKDHITLKDYEI DGMGLELYY+
Sbjct:    1 MIEVVLNDRLGKKVRVKCNDDDTIGDLKKLVAAQTGTRAEKIRIQKWYNIYKDHITLKDYEIHDGMGLELYYN 73          
BLAST of CB304433 vs. ExPASy Swiss-Prot
Match: UBL5_PSAOB (Ubiquitin-like protein 5 OS=Psammomys obesus GN=UBL5 PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 7.935e-27
Identity = 56/72 (77.78%), Postives = 63/72 (87.50%), Query Frame = -3
Query:  324 MIEVVLNDRLGKKVRVKCNEDDPIGDLKKLVAAQTGTRADKIRIQKWYNIYKDHITLKDYEIQDGMGLELYY 539
            MIEVV NDRLGKKVRVKCN DD IGDLKKL+AAQTGTR +KI ++KWY I+KDH++L DYEI DGM LELYY
Sbjct:    1 MIEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKDHVSLGDYEIHDGMNLELYY 72          
BLAST of CB304433 vs. ExPASy Swiss-Prot
Match: UBL5_MOUSE (Ubiquitin-like protein 5 OS=Mus musculus GN=Ubl5 PE=1 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 7.935e-27
Identity = 56/72 (77.78%), Postives = 63/72 (87.50%), Query Frame = -3
Query:  324 MIEVVLNDRLGKKVRVKCNEDDPIGDLKKLVAAQTGTRADKIRIQKWYNIYKDHITLKDYEIQDGMGLELYY 539
            MIEVV NDRLGKKVRVKCN DD IGDLKKL+AAQTGTR +KI ++KWY I+KDH++L DYEI DGM LELYY
Sbjct:    1 MIEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKDHVSLGDYEIHDGMNLELYY 72          
BLAST of CB304433 vs. ExPASy Swiss-Prot
Match: UBL5_MESAU (Ubiquitin-like protein 5 OS=Mesocricetus auratus GN=UBL5 PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 7.935e-27
Identity = 56/72 (77.78%), Postives = 63/72 (87.50%), Query Frame = -3
Query:  324 MIEVVLNDRLGKKVRVKCNEDDPIGDLKKLVAAQTGTRADKIRIQKWYNIYKDHITLKDYEIQDGMGLELYY 539
            MIEVV NDRLGKKVRVKCN DD IGDLKKL+AAQTGTR +KI ++KWY I+KDH++L DYEI DGM LELYY
Sbjct:    1 MIEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKDHVSLGDYEIHDGMNLELYY 72          
BLAST of CB304433 vs. ExPASy Swiss-Prot
Match: UBL5_HUMAN (Ubiquitin-like protein 5 OS=Homo sapiens GN=UBL5 PE=1 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 7.935e-27
Identity = 56/72 (77.78%), Postives = 63/72 (87.50%), Query Frame = -3
Query:  324 MIEVVLNDRLGKKVRVKCNEDDPIGDLKKLVAAQTGTRADKIRIQKWYNIYKDHITLKDYEIQDGMGLELYY 539
            MIEVV NDRLGKKVRVKCN DD IGDLKKL+AAQTGTR +KI ++KWY I+KDH++L DYEI DGM LELYY
Sbjct:    1 MIEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKDHVSLGDYEIHDGMNLELYY 72          
BLAST of CB304433 vs. ExPASy Swiss-Prot
Match: UBL5_BOVIN (Ubiquitin-like protein 5 OS=Bos taurus GN=UBL5 PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 7.935e-27
Identity = 56/72 (77.78%), Postives = 63/72 (87.50%), Query Frame = -3
Query:  324 MIEVVLNDRLGKKVRVKCNEDDPIGDLKKLVAAQTGTRADKIRIQKWYNIYKDHITLKDYEIQDGMGLELYY 539
            MIEVV NDRLGKKVRVKCN DD IGDLKKL+AAQTGTR +KI ++KWY I+KDH++L DYEI DGM LELYY
Sbjct:    1 MIEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKDHVSLGDYEIHDGMNLELYY 72          
BLAST of CB304433 vs. ExPASy Swiss-Prot
Match: UBL5_DANRE (Ubiquitin-like protein 5 OS=Danio rerio GN=ubl5 PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 3.015e-26
Identity = 54/72 (75.00%), Postives = 64/72 (88.89%), Query Frame = -3
Query:  324 MIEVVLNDRLGKKVRVKCNEDDPIGDLKKLVAAQTGTRADKIRIQKWYNIYKDHITLKDYEIQDGMGLELYY 539
            MIEVV NDRLGKKVRVKCN++D IGDLKKL+AAQTGTR +KI ++KWY I+K+H++L DYEI DGM LELYY
Sbjct:    1 MIEVVCNDRLGKKVRVKCNQEDTIGDLKKLIAAQTGTRWEKIVLKKWYTIFKNHVSLGDYEIHDGMNLELYY 72          
BLAST of CB304433 vs. ExPASy Swiss-Prot
Match: UBL5_CAEEL (Ubiquitin-like protein 5 OS=Caenorhabditis elegans GN=ubl-5 PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 1.954e-25
Identity = 52/72 (72.22%), Postives = 60/72 (83.33%), Query Frame = -3
Query:  324 MIEVVLNDRLGKKVRVKCNEDDPIGDLKKLVAAQTGTRADKIRIQKWYNIYKDHITLKDYEIQDGMGLELYY 539
            MIE+ +NDRLGKKVR+KCN  D IGDLKKL+AAQTGTR +KI ++KWY IYKDHITL DYEI +G   ELYY
Sbjct:    1 MIEITVNDRLGKKVRIKCNPSDTIGDLKKLIAAQTGTRWEKIVLKKWYTIYKDHITLMDYEIHEGFNFELYY 72          
BLAST of CB304433 vs. ExPASy Swiss-Prot
Match: UBL5_DROME (Ubiquitin-like protein 5 OS=Drosophila melanogaster GN=ubl PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 4.354e-25
Identity = 53/72 (73.61%), Postives = 60/72 (83.33%), Query Frame = -3
Query:  324 MIEVVLNDRLGKKVRVKCNEDDPIGDLKKLVAAQTGTRADKIRIQKWYNIYKDHITLKDYEIQDGMGLELYY 539
            MIE+  NDRLGKKVRVKCN DD IGDLKKL+AAQTGT+ +KI ++KWY I+KD I L DYEI DGM LELYY
Sbjct:    1 MIEITCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTKHEKIVLKKWYTIFKDPIRLSDYEIHDGMNLELYY 72          
BLAST of CB304433 vs. ExPASy Swiss-Prot
Match: HUB1_SCHPO (Ubiquitin-like modifier hub1 OS=Schizosaccharomyces pombe GN=hub1 PE=1 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 2.389e-23
Identity = 50/73 (68.49%), Postives = 61/73 (83.56%), Query Frame = -3
Query:  321 MIEVVLNDRLGKKVRVKCNEDDPIGDLKKLVAAQTGTRADKIRIQKWYNIYKDHITLKDYEIQDGMGLELYYS 539
            MIEV+ NDRLGKKVRVKC  DD +GD KKLVAAQTGT   +I ++KW++++KD+ITL DYEI DGM LE+YYS
Sbjct:    1 MIEVLCNDRLGKKVRVKCMPDDTVGDFKKLVAAQTGTDPRRIVLKKWHSVFKDNITLADYEIHDGMSLEMYYS 73          
The following BLAST results are available for this feature:
BLAST of CB304433 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
UBL5_ARATH8.753e-3493.15Ubiquitin-like protein 5 OS=Arabidopsis thaliana G... [more]
UBL5_PSAOB7.935e-2777.78Ubiquitin-like protein 5 OS=Psammomys obesus GN=UB... [more]
UBL5_MOUSE7.935e-2777.78Ubiquitin-like protein 5 OS=Mus musculus GN=Ubl5 P... [more]
UBL5_MESAU7.935e-2777.78Ubiquitin-like protein 5 OS=Mesocricetus auratus G... [more]
UBL5_HUMAN7.935e-2777.78Ubiquitin-like protein 5 OS=Homo sapiens GN=UBL5 P... [more]
UBL5_BOVIN7.935e-2777.78Ubiquitin-like protein 5 OS=Bos taurus GN=UBL5 PE=... [more]
UBL5_DANRE3.015e-2675.00Ubiquitin-like protein 5 OS=Danio rerio GN=ubl5 PE... [more]
UBL5_CAEEL1.954e-2572.22Ubiquitin-like protein 5 OS=Caenorhabditis elegans... [more]
UBL5_DROME4.354e-2573.61Ubiquitin-like protein 5 OS=Drosophila melanogaste... [more]
HUB1_SCHPO2.389e-2368.49Ubiquitin-like modifier hub1 OS=Schizosaccharomyce... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionFLAVEDO0001_IIIaR_G08 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IIIaR_G08 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304433 ID=CB304433; Name=CB304433; organism=Citrus sinensis; type=EST; length=595bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCGCCAAGGTATTCACAAAA
TTCTATCAGCCTAATGGACTGACAAGTATGTGGGACCTCAATACCTTGAT
AAAGATCTAAACACCATTCAAAATGGAGAGTAAGTCCAGATCCCAGATAT
GTTACATAACCACAAATAAGTTTTTACAAGTCTTCACAAATCTTTTCTTA
CAAGACAGTATTAATAAAGTTGGCCCTGCCGCATCTTCCAATACTCCTTG
CTTATTATGGCATATGGTTCCTAGTAGTATTGACTGCTTGCAACAGCATA
TATATTTAACGGTGGATTTAGCTGTAATAAAGTTCGAGGCCCATGCCGTC
CTGAATCTCGTAGTCCTTGAGAGTGATGTGGTCCTTGTAGATGTTGTACC
ACTTCTGAATCCGAATCTTGTCGGCTCGAGTCCCGGTCTGAGCCGCCACC
AGCTTCTTCAAGTCGCCTATGGGGTCGTCTTCGTTGCACTTCACGCGCAC
CTTCTTCCCGAGCCTGTCGTTCAGCACCACCTCAATCATCTTTGTCTCCT
GTTTTGATTTTCCCTGCCGAATGATTTGGGATTTTCTCGTTTCCC
back to top