CB304486

Overview
NameCB304486
Unique NameCB304486
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length616
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB304486 vs. ExPASy Swiss-Prot
Match: HS181_ARATH (18.1 kDa class I heat shock protein OS=Arabidopsis thaliana GN=HSP18.1 PE=2 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 8.434e-35
Identity = 71/115 (61.74%), Postives = 87/115 (75.65%), Query Frame = -3
Query:  270 EISQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNVKVEQVKASMEYGVLTVTXXXXXXXXXXXKAIEISG 614
            +++ F NAR+DWKETP+AHVFKADLPGL+         +  +LQISGERSKE EEKNDKWHRVER+SGKF+RRFRLP+N K+E+VKA+ME GVLTV            K+I+ISG
Sbjct:   45 DVAAFTNARVDWKETPEAHVFKADLPGLKKEEVKVEVEDKNVLQISGERSKENEEKNDKWHRVERASGKFMRRFRLPENAKMEEVKATMENGVLTVVVPKAPEKKPQVKSIDISG 159          
BLAST of CB304486 vs. ExPASy Swiss-Prot
Match: HS16A_ORYSJ (16.9 kDa class I heat shock protein 1 OS=Oryza sativa subsp. japonica GN=HSP16.9A PE=1 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 8.434e-35
Identity = 73/115 (63.48%), Postives = 88/115 (76.52%), Query Frame = -3
Query:  270 EISQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNVKVEQVKASMEYGVLTVTXXXXXXXXXXXKAIEISG 614
            + + FANARIDWKETP++HVFKADLPG++         EG +L ISG+RSKE+E+KNDKWHRVERSSG+F+RRFRLP+N KV+QVKA +E GVLTVT           KAIEISG
Sbjct:   36 DTAAFANARIDWKETPESHVFKADLPGVKKEEVKVEVEEGNVLVISGQRSKEKEDKNDKWHRVERSSGQFMRRFRLPENAKVDQVKAGLENGVLTVTVPKAEVKKPEVKAIEISG 150          
BLAST of CB304486 vs. ExPASy Swiss-Prot
Match: HSP11_SOLLC (17.8 kDa class I heat shock protein OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.439e-34
Identity = 74/115 (64.35%), Postives = 86/115 (74.78%), Query Frame = -3
Query:  270 EISQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNVKVEQVKASMEYGVLTVTXXXXXXXXXXXKAIEISG 614
            E S FAN RIDWKETP+ HVFK DLPGL+         E R+LQISGER+ E+E+KNDKWHR+ERSSGKF+RRFRLP+N K++QVKASME GVLTVT           K+IEISG
Sbjct:   40 ESSAFANTRIDWKETPEPHVFKVDLPGLKKEEVKVEVEEDRVLQISGERNVEKEDKNDKWHRMERSSGKFMRRFRLPENAKMDQVKASMENGVLTVTVPKEEVKKPEVKSIEISG 154          
BLAST of CB304486 vs. ExPASy Swiss-Prot
Match: HS16A_WHEAT (16.9 kDa class I heat shock protein 1 OS=Triticum aestivum GN=hsp16.9A PE=2 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.439e-34
Identity = 71/115 (61.74%), Postives = 87/115 (75.65%), Query Frame = -3
Query:  270 EISQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNVKVEQVKASMEYGVLTVTXXXXXXXXXXXKAIEISG 614
            E + FANAR+DWKETP+AHVFK DLPG++         +G +L +SGERS+E+E+KNDKWHRVERSSGKF+RRFRLP++ KVE+VKA +E GVLTVT           KAIEISG
Sbjct:   37 ETAAFANARVDWKETPEAHVFKVDLPGVKKEEVKVEVEDGNVLVVSGERSREKEDKNDKWHRVERSSGKFVRRFRLPEDAKVEEVKAGLENGVLTVTVPKAEVKKPEVKAIEISG 151          
BLAST of CB304486 vs. ExPASy Swiss-Prot
Match: HSP16_SOYBN (18.5 kDa class I heat shock protein OS=Glycine max GN=HSP18.5-C PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 1.879e-34
Identity = 73/115 (63.48%), Postives = 86/115 (74.78%), Query Frame = -3
Query:  270 EISQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNVKVEQVKASMEYGVLTVTXXXXXXXXXXXKAIEISG 614
            E S F + R+DWKETP+AHVFKAD+PGL+         + ++LQISGER+ E+E+KND WHRVERSSGKF+RRFRLP+N KVEQVKASME GVLTVT           KAIEISG
Sbjct:   47 ENSAFVSTRVDWKETPEAHVFKADIPGLKKEEVKVQIEDDKVLQISGERNVEKEDKNDTWHRVERSSGKFMRRFRLPENAKVEQVKASMENGVLTVTVPKEEVKKPDVKAIEISG 161          
BLAST of CB304486 vs. ExPASy Swiss-Prot
Match: HSP13_SOYBN (17.5 kDa class I heat shock protein OS=Glycine max GN=HSP17.5-M PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 2.454e-34
Identity = 73/115 (63.48%), Postives = 85/115 (73.91%), Query Frame = -3
Query:  270 EISQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNVKVEQVKASMEYGVLTVTXXXXXXXXXXXKAIEISG 614
            E S F N R+DWKETP+AHVF+AD+PGL+         + R+LQISGER+ E+E+KND WHRVERSSG F+RRFRLP+N KVEQVKASME GVLTVT           KAIEISG
Sbjct:   39 ENSAFVNTRVDWKETPEAHVFEADIPGLKKEEVKVQIEDDRVLQISGERNLEKEDKNDTWHRVERSSGNFMRRFRLPENAKVEQVKASMENGVLTVTVPKEEVKKPDVKAIEISG 153          
BLAST of CB304486 vs. ExPASy Swiss-Prot
Match: HSP12_DAUCA (18.0 kDa class I heat shock protein OS=Daucus carota PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 3.205e-34
Identity = 74/115 (64.35%), Postives = 85/115 (73.91%), Query Frame = -3
Query:  270 EISQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNVKVEQVKASMEYGVLTVTXXXXXXXXXXXKAIEISG 614
            E + FAN  IDWKETPQAHVFKADLPGL+         EG++LQISGER+KE+EEKN+KWHRVE SSGKFLRRFRLP+N  V++VKA ME GVLTVT           K+I ISG
Sbjct:   45 ETAAFANTHIDWKETPQAHVFKADLPGLKKEEVKVEVEEGKVLQISGERNKEKEEKNNKWHRVEFSSGKFLRRFRLPENANVDEVKAGMENGVLTVTVPKVEMKKPEVKSIHISG 159          
BLAST of CB304486 vs. ExPASy Swiss-Prot
Match: HSP11_SOYBN (17.3 kDa class I heat shock protein OS=Glycine max GN=HSP17.3-B PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 4.186e-34
Identity = 72/115 (62.61%), Postives = 86/115 (74.78%), Query Frame = -3
Query:  270 EISQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNVKVEQVKASMEYGVLTVTXXXXXXXXXXXKAIEISG 614
            E S F + R+DWKETP+AHVFKAD+PGL+         +GR+LQISGER+ E+E+KND WHRVERSSGK +RRFRLP+N KV+QVKASME GVLTVT           KAI+ISG
Sbjct:   39 ENSAFVSTRVDWKETPEAHVFKADIPGLKKEEVKLEIQDGRVLQISGERNVEKEDKNDTWHRVERSSGKLVRRFRLPENAKVDQVKASMENGVLTVTVPKEEIKKPDVKAIDISG 153          
BLAST of CB304486 vs. ExPASy Swiss-Prot
Match: HSP17_ARATH (17.4 kDa class I heat shock protein OS=Arabidopsis thaliana GN=HSP17.4A PE=1 SV=2)

HSP 1 Score: 144.05 bits (362), Expect = 5.467e-34
Identity = 69/115 (60.00%), Postives = 87/115 (75.65%), Query Frame = -3
Query:  270 EISQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNVKVEQVKASMEYGVLTVTXXXXXXXXXXXKAIEISG 614
            +++ F NA++DW+ETP+AHVFKAD+PGL+         +G ILQISGERS E EEK+D WHRVERSSGKF+RRFRLP+N KVE+VKASME GVL+VT           K+++ISG
Sbjct:   42 DVAAFTNAKVDWRETPEAHVFKADVPGLKKEEVKVEVEDGNILQISGERSSENEEKSDTWHRVERSSGKFMRRFRLPENAKVEEVKASMENGVLSVTVPKVQESKPEVKSVDISG 156          
BLAST of CB304486 vs. ExPASy Swiss-Prot
Match: HSP11_PEA (18.1 kDa class I heat shock protein OS=Pisum sativum GN=HSP18.1 PE=2 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 9.325e-34
Identity = 71/111 (63.96%), Postives = 85/111 (76.58%), Query Frame = -3
Query:  270 FANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNVKVEQVKASMEYGVLTVTXXXXXXXXXXXKAIEISG 602
            F + R+DWKETP+AHVFKADLPGL+         + R+LQISGERS E+E+KND+WHRVERSSGKFLRRFRLP+N K+++VKASME GVLTVT           K+IEISG
Sbjct:   48 FVSTRVDWKETPEAHVFKADLPGLKKEEVKVEVEDDRVLQISGERSVEKEDKNDEWHRVERSSGKFLRRFRLPENAKMDKVKASMENGVLTVTVPKEEIKKAEVKSIEISG 158          
The following BLAST results are available for this feature:
BLAST of CB304486 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 54
Match NameE-valueIdentityDescription
HS181_ARATH8.434e-3561.7418.1 kDa class I heat shock protein OS=Arabidopsis... [more]
HS16A_ORYSJ8.434e-3563.4816.9 kDa class I heat shock protein 1 OS=Oryza sat... [more]
HSP11_SOLLC1.439e-3464.3517.8 kDa class I heat shock protein OS=Solanum lyc... [more]
HS16A_WHEAT1.439e-3461.7416.9 kDa class I heat shock protein 1 OS=Triticum ... [more]
HSP16_SOYBN1.879e-3463.4818.5 kDa class I heat shock protein OS=Glycine max... [more]
HSP13_SOYBN2.454e-3463.4817.5 kDa class I heat shock protein OS=Glycine max... [more]
HSP12_DAUCA3.205e-3464.3518.0 kDa class I heat shock protein OS=Daucus caro... [more]
HSP11_SOYBN4.186e-3462.6117.3 kDa class I heat shock protein OS=Glycine max... [more]
HSP17_ARATH5.467e-3460.0017.4 kDa class I heat shock protein OS=Arabidopsis... [more]
HSP11_PEA9.325e-3463.9618.1 kDa class I heat shock protein OS=Pisum sativ... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0001_IIaR_E02 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IIaR_E02 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304486 ID=CB304486; Name=CB304486; organism=Citrus sinensis; type=EST; length=616bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCTCGCATTACAAAATATATT
TTATTGCATCACACTTTTATCATTTAAAAAACTAGTTACAACGCTTGAGA
CTGGCTCCTGAAGCTCTTGCAAACACACAAACATAATCACATCAAATTAA
ACAGGGGGGAAGGGAAGCTCTTGCAAACACACACACACACACACAAGGGC
TTTGCTTTCGTACCAAATTTATTAGCAAACCAAAGACACAATCTTGAAAA
CATTTACACTTATCACTTAGCCAGAGATCTCAATGGCCTTAACTTCAGGT
TTCTTCTCCTCCTGTTTAGGAACAGTCACTGTGAGCACACCATACTCCAT
GCTGGCCTTAACCTGCTCCACCTTAACATTGTCGGGCAACCTGAACCTCC
TCAGGAACTTGCCACTGCTCCTCTCGACGCGATGCCACTTGTCATTCTTC
TCTTCCTGCTCCTTGCTCCTCTCCCCGCTTATCTGCAGAATCCTGCCCTC
TTCAACCTCAACTTTCACTTCTTCTTTCCTCAGCCCTGGAAGATCAGCCT
TGAATACATGAGCCTGAGGAGTCTCTTTCCAGTCAATTCTTGCATTGGCG
AATTGGGATATTTCCC
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