CB304491

Overview
NameCB304491
Unique NameCB304491
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length531
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5402 contig Csv1_Contig5402:476..1005. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304491 vs. ExPASy Swiss-Prot
Match: GSTF1_MAIZE (Glutathione S-transferase 1 OS=Zea mays GN=GST1 PE=1 SV=4)

HSP 1 Score: 73.1738 bits (178), Expect = 8.869e-13
Identity = 37/77 (48.05%), Postives = 49/77 (63.64%), Query Frame = -1
Query:  301 NEAKLAKILDVYEARLSQSKYLACDSFTLVDLHHLPNINLLLGTPVKKLFDARPHVSAWAADITSRPAWAKVLALLK 531
            N  KL K+L+VYEARL++ KYLA D  +L DL+H+     L  TP   + DA PHV AW + +  RP+  KV AL+K
Sbjct:  135 NLEKLKKVLEVYEARLTKCKYLAGDFLSLADLNHVSVTLCLFATPYASVLDAYPHVKAWWSGLMERPSVQKVAALMK 211          
BLAST of CB304491 vs. ExPASy Swiss-Prot
Match: GSTF2_ORYSJ (Probable glutathione S-transferase GSTF2 OS=Oryza sativa subsp. japonica GN=GSTF2 PE=1 SV=3)

HSP 1 Score: 71.633 bits (174), Expect = 2.580e-12
Identity = 36/77 (46.75%), Postives = 49/77 (63.64%), Query Frame = -1
Query:  301 NEAKLAKILDVYEARLSQSKYLACDSFTLVDLHHLPNINLLLGTPVKKLFDARPHVSAWAADITSRPAWAKVLALLK 531
            N  KL K+L+VYEARL++ KYLA D  ++ DL H+     L  TP   + DA PHV AW  D+ +RP+  KV +L+K
Sbjct:  136 NLEKLKKVLEVYEARLTKCKYLAGDYISVADLSHVAGTVCLGATPHASVLDAYPHVKAWWTDLMARPSSQKVASLMK 212          
BLAST of CB304491 vs. ExPASy Swiss-Prot
Match: GSTF3_ARATH (Glutathione S-transferase ERD13 OS=Arabidopsis thaliana GN=ERD13 PE=1 SV=3)

HSP 1 Score: 69.707 bits (169), Expect = 9.806e-12
Identity = 40/76 (52.63%), Postives = 52/76 (68.42%), Query Frame = -1
Query:  310 NEAKLAKILDVYEARLSQSKYLACDSFTLVDLHHLPNINLLLGTPVKK--LFDARPHVSAWAADITSRPAWAKVLA 531
            +E KLA++LDVYEA+LS+++YLA D  +L DL HLP    L+G P+ K  L   R HVSAW   I+SR AW +V A
Sbjct:  135 SEEKLAEVLDVYEAQLSKNEYLAGDFVSLADLAHLPFTEYLVG-PIGKAHLIKDRKHVSAWWDKISSRAAWKEVSA 209          
BLAST of CB304491 vs. ExPASy Swiss-Prot
Match: GSTF3_MAIZE (Glutathione S-transferase 3 OS=Zea mays GN=GST3 PE=1 SV=4)

HSP 1 Score: 66.6254 bits (161), Expect = 8.301e-11
Identity = 39/84 (46.43%), Postives = 51/84 (60.71%), Query Frame = -1
Query:  274 KLAKILDVYEARLSQSKYLACDSFTLVDLHHLPNINLLLGTPVKK-LFDARPHVSAWAADITSRPAWAKVLALLKH*TLCPPPT 522
            +LAK+LDVYEA L+++KYLA D FTL D +H     L    P +     ARPHV AW   I +RPA+ K +A +    L PPP+
Sbjct:  139 QLAKVLDVYEAHLARNKYLAGDEFTLADANHALLPALTSARPPRPGCVAARPHVKAWWEAIAARPAFQKTVAAI---PLPPPPS 219          
The following BLAST results are available for this feature:
BLAST of CB304491 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
GSTF1_MAIZE8.869e-1348.05Glutathione S-transferase 1 OS=Zea mays GN=GST1 PE... [more]
GSTF2_ORYSJ2.580e-1246.75Probable glutathione S-transferase GSTF2 OS=Oryza ... [more]
GSTF3_ARATH9.806e-1252.63Glutathione S-transferase ERD13 OS=Arabidopsis tha... [more]
GSTF3_MAIZE8.301e-1146.43Glutathione S-transferase 3 OS=Zea mays GN=GST3 PE... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0001_IIaR_E07 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IIaR_E07 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304491 ID=CB304491; Name=CB304491; organism=Citrus sinensis; type=EST; length=531bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGCAGAATATCTCCAGCTT
CGTTTTATTAGGGTACATAGATAAAATAAAAACCTCAAGCCATCAACATC
AAAGTTGAATATGAGGCAGTGCTGTTGAAATACAAAAGCGGTAGTACAAA
CTACAAAGCATCAATATTCTGCAGAATATTGATGACAAACGCCAAACAAG
AGAATACGAACTCGAAAACCAGCCTAATAGGTATTACAAAAGATAAGTGA
CCACCGAGGAGCGACTAACGTCTAGTAGGTGGCGGGCAGAGTGTTCAGTG
TTTGAGCAAGGCAAGGACCTTAGCCCAAGCCGGTCTGGAAGTGATATCAG
CTGCCCATGCGCTAACATGGGGGCGTGCATCAAACAGCTTCTTGACAGGC
GTCCCCAACAACAAATTAATATTGGGGAGATGATGCAAATCGACCAAGGT
GAAGCTGTCGCACGCCAAGTATTTGGACTGGGACAAACGGGCCTCGTAAA
CATCTAAAATTTTGGCAAGCTTAGCTTCATT
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