CB304492

Overview
NameCB304492
Unique NameCB304492
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length581
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB304492 vs. ExPASy Swiss-Prot
Match: NLTP3_HORVU (Non-specific lipid-transfer protein 3 OS=Hordeum vulgare GN=LTP3 PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.023e-23
Identity = 49/108 (45.37%), Postives = 72/108 (66.67%), Query Frame = -3
Query:  256 VCALLLCILVTAPVTNAITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRV 579
            V   ++  ++      AI+CGQV+++L+PCI + R  G  PP  CCSGV+ L GAA++T D+QAAC CLK    +I+GI     +G+P +CGV +P+ IS STDC++V
Sbjct:   10 VLVAMVAAMLLVATDAAISCGQVSSALSPCISYARGNGAKPPVACCSGVKRLAGAAQSTADKQAACRCLKSLATSIKGINMGKVSGVPGKCGVSVPFPISMSTDCNKV 117          
BLAST of CB304492 vs. ExPASy Swiss-Prot
Match: NLTP3_BRANA (Non-specific lipid-transfer protein 3 OS=Brassica napus GN=LTP3 PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 2.278e-23
Identity = 55/110 (50.00%), Postives = 69/110 (62.73%), Query Frame = -3
Query:  253 CALLLCILVTAPVTN--AITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 576
            C +L C++V  P+    A++CG V+ +LA CI +L   G  P   CCSGV SLN  ARTTPDRQ AC CL  A   +  I    AAGLP  CGV IPYKIS +T+C+ V+
Sbjct:    9 CLVLACMIVAGPIATNAALSCGTVSGNLAACIGYLTQNGPVPTA-CCSGVTSLNNMARTTPDRQQACRCLVGAANALPTINVARAAGLPKACGVNIPYKISKTTNCNSVK 117          
BLAST of CB304492 vs. ExPASy Swiss-Prot
Match: NLTPA_BRAOT (Non-specific lipid-transfer protein A OS=Brassica oleracea var. italica GN=WAX9A PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 2.975e-23
Identity = 53/114 (46.49%), Postives = 74/114 (64.91%), Query Frame = -3
Query:  253 CALLLCILVTAPVT--NAITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNV----AAGLPSQCGVRIPYKISPSTDCSRVR 576
            C +L C++V  P+T   A+TCG V +++APCI ++  GG  P   CC+GV  LN  ARTTPDRQ AC CL+ A    R + PN+    AAG+P  CGV +P+ IS +T+C+ V+
Sbjct:    9 CLVLACMIVAGPITANRALTCGTVNSNVAPCIGYITQGGTLPGA-CCTGVSKLNSMARTTPDRQQACRCLETA---ARALGPNLNAGRAAGIPKACGVSVPFPISTNTNCNNVK 118          
BLAST of CB304492 vs. ExPASy Swiss-Prot
Match: NLTP_ELECO (Non-specific lipid-transfer protein OS=Eleusine coracana PE=1 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 3.886e-23
Identity = 51/93 (54.84%), Postives = 65/93 (69.89%), Query Frame = -3
Query:  256 AITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNC-LKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRV 531
            AI+CGQV++++ PC+ + R  G  P   C SGVRSLN AARTT DR+AACNC LK A   + G+    A+ +P +CGVR+PY IS S DCSRV
Sbjct:    1 AISCGQVSSAIGPCLAYARGAGAAPSASCQSGVRSLNAAARTTADRRAACNCSLKSAASRVSGLNAGKASSIPGRCGVRLPYAISASIDCSRV 93          
BLAST of CB304492 vs. ExPASy Swiss-Prot
Match: NLTPB_BRAOT (Non-specific lipid-transfer protein B OS=Brassica oleracea var. italica GN=WAX9B PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 5.075e-23
Identity = 54/110 (49.09%), Postives = 69/110 (62.73%), Query Frame = -3
Query:  253 CALLLCILVTAPVTN--AITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 576
            C +L C++V  P+    A++CG V+ +LA CI +L   G  P   CC+GV +LN  ARTTPDRQ AC CL  A  +   +    AAGLP  CGV IPYKIS ST+C+ VR
Sbjct:    9 CLVLACMIVAGPIATNAALSCGTVSGNLAACIGYLTQNGPLPRG-CCTGVTNLNNMARTTPDRQQACRCLVGAANSFPTLNAARAAGLPKACGVNIPYKISKSTNCNSVR 117          
BLAST of CB304492 vs. ExPASy Swiss-Prot
Match: NLTP1_BRANA (Non-specific lipid-transfer protein 1 OS=Brassica napus GN=LTP1 PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 6.628e-23
Identity = 54/110 (49.09%), Postives = 68/110 (61.82%), Query Frame = -3
Query:  253 CALLLCILVTAPVTN--AITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 576
            C +L C++V  P+    A++CG V+ +LA CI +L   G  P   CC+GV +LN  ARTTPDRQ AC CL  A      +    AAGLP  CGV IPYKIS ST+C+ VR
Sbjct:    9 CLVLACMIVAGPIATNAALSCGTVSGNLAACIGYLTQNGPLPRG-CCTGVTNLNNMARTTPDRQQACRCLVGAANAFPTLNAARAAGLPKACGVNIPYKISKSTNCNSVR 117          
BLAST of CB304492 vs. ExPASy Swiss-Prot
Match: NLTP5_VITSX (Non-specific lipid-transfer protein P5 OS=Vitis sp. PE=1 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 5.611e-22
Identity = 48/91 (52.75%), Postives = 63/91 (69.23%), Query Frame = -3
Query:  256 ITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRV 528
            ++CG V   LAPCI +LR+ G  P   CC+GV++L  +A TT DR+ AC CL  A  +I G+   +AAGLP +CGV IPYKISPST+C +V
Sbjct:    1 LSCGDVATQLAPCINYLRSAGPLPVA-CCNGVKNLKNSAATTQDRRTACKCLINASKSISGVNFGLAAGLPGKCGVNIPYKISPSTNCDQV 90          
BLAST of CB304492 vs. ExPASy Swiss-Prot
Match: NLTPC_ARATH (Non-specific lipid-transfer protein 12 OS=Arabidopsis thaliana GN=LTP12 PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 3.637e-21
Identity = 48/107 (44.86%), Postives = 67/107 (62.62%), Query Frame = -3
Query:  256 CALLLCILVTAPVTNAITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRV 576
            C ++L I + +P  + I CG VT++LA C+ +L   G  P   CC GV+SL   A+TTPDR+  C CLK A   I+G+  ++ A LP+ CGV IPY IS ST+C  +
Sbjct:   10 CLIVLTIYMASPTESTIQCGTVTSTLAQCLTYLTNSGPLPSQ-CCVGVKSLYQLAQTTPDRKQVCECLKLAGKEIKGLNTDLVAALPTTCGVSIPYPISFSTNCDSI 115          
BLAST of CB304492 vs. ExPASy Swiss-Prot
Match: NLTP8_HORVU (Non-specific lipid-transfer protein Cw18 OS=Hordeum vulgare GN=CW18 PE=1 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 4.750e-21
Identity = 50/106 (47.17%), Postives = 67/106 (63.21%), Query Frame = -3
Query:  256 ALLLCILVTAPVTNAITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRV 573
            AL+  +L+ A    AITCGQV+++L PC  + +  G  P   CCSGV+ L G AR+T D+QA C CLK   G     +   AAG+PS+CGV +PY IS S DCS++
Sbjct:   13 ALVAAMLLVA-ADAAITCGQVSSALGPCAAYAKGSGTSPSAGCCSGVKRLAGLARSTADKQATCRCLKSVAGAYNAGR---AAGIPSRCGVSVPYTISASVDCSKI 114          
BLAST of CB304492 vs. ExPASy Swiss-Prot
Match: NLTP3_VITSX (Non-specific lipid-transfer protein P3 OS=Vitis sp. PE=1 SV=2)

HSP 1 Score: 100.523 bits (249), Expect = 6.204e-21
Identity = 47/91 (51.65%), Postives = 62/91 (68.13%), Query Frame = -3
Query:  256 ITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRV 528
            ++CG V   +A CI +LR  G  P   CC+GV++L  +A TT DR+ AC CL  A  TI G+   +AAGLP++CGV IPYKISPST+C +V
Sbjct:    1 LSCGDVATQMASCINYLRGAGPLPAA-CCNGVKNLKNSATTTQDRRTACKCLISASKTISGVNFGLAAGLPAKCGVSIPYKISPSTNCDQV 90          
The following BLAST results are available for this feature:
BLAST of CB304492 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 81
Match NameE-valueIdentityDescription
NLTP3_HORVU1.023e-2345.37Non-specific lipid-transfer protein 3 OS=Hordeum v... [more]
NLTP3_BRANA2.278e-2350.00Non-specific lipid-transfer protein 3 OS=Brassica ... [more]
NLTPA_BRAOT2.975e-2346.49Non-specific lipid-transfer protein A OS=Brassica ... [more]
NLTP_ELECO3.886e-2354.84Non-specific lipid-transfer protein OS=Eleusine co... [more]
NLTPB_BRAOT5.075e-2349.09Non-specific lipid-transfer protein B OS=Brassica ... [more]
NLTP1_BRANA6.628e-2349.09Non-specific lipid-transfer protein 1 OS=Brassica ... [more]
NLTP5_VITSX5.611e-2252.75Non-specific lipid-transfer protein P5 OS=Vitis sp... [more]
NLTPC_ARATH3.637e-2144.86Non-specific lipid-transfer protein 12 OS=Arabidop... [more]
NLTP8_HORVU4.750e-2147.17Non-specific lipid-transfer protein Cw18 OS=Hordeu... [more]
NLTP3_VITSX6.204e-2151.65Non-specific lipid-transfer protein P3 OS=Vitis sp... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0001_IIaR_E09 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IIaR_E09 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304492 ID=CB304492; Name=CB304492; organism=Citrus sinensis; type=EST; length=581bp
TTTTTTTTTTCTTTTTTTTTTTTTTTTTTTCGCGATAATACCACAAAATA
ACTATAATTAATCACTCAAAACACAGATCGCGTTTACATATTTAATATGA
CATAAAAAGCAAATATACAAACATGACATGAGAGTGAAACTCATACGAGT
GGAGACTCGTTCGGACAAAGAAATTAACATAGATATTCTTTATTTATTTA
TTCTTCTCAGTCAATCATACTTGGAAAGTCACAGAGCTCAAACTCAACTT
CACCTGACCCTAGAGCAGTCGGTGCTGGGGCTGATCTTGTAAGGAATTCT
GACTCCACATTGACTAGGGAGGCCAGCGGCAACATTAGGTTTGATGCCGC
GGATTGTTCCGTAAGCTCGTTTCAAGCAGTTGCATGCAGCTTGGCGGTCA
GGGGTGGTTCTGGCGGCGCCGTTGAGAGACCTGACGCCGCTACAGCATGG
CGGTGGAGGAAAACGCCCTCCAGTTCTCAAGAAAGGGATGCATGGAGCCA
AGGAGGCTGTCACCTGCCCGCATGTTATGGCATTAGTCACCGGGGCAGTC
ACCAGAATGCACAAAAGCAAAGCACAAACAA
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