CB304523

Overview
NameCB304523
Unique NameCB304523
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length613
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2673 contig Csv1_Contig2673:843..1455. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304523 vs. ExPASy Swiss-Prot
Match: CALN_CHICK (Neo-calmodulin (Fragment) OS=Gallus gallus PE=2 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.012e-28
Identity = 58/65 (89.23%), Postives = 64/65 (98.46%), Query Frame = -1
Query:  413 EDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEF 607
            +DTDSEEE++EAFRVFDKD NG+ISAAELRHVMTNLGEKLTDEEVDEMIREAD+DGDGQ+NYEEF
Sbjct:   67 KDTDSEEEIREAFRVFDKDSNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEF 131          
BLAST of CB304523 vs. ExPASy Swiss-Prot
Match: CALMF_NAEGR (Calmodulin, flagellar OS=Naegleria gruberi GN=CAM1 PE=2 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.012e-28
Identity = 60/72 (83.33%), Postives = 66/72 (91.67%), Query Frame = -1
Query:  392 EDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 607
            +DTD+EEE+KEAF+VFDKD NGFISA ELRHVM NLGEKLTDEEVDEMIREAD+DGD QINY EFVK+MM K
Sbjct:   84 KDTDNEEEIKEAFKVFDKDGNGFISAQELRHVMCNLGEKLTDEEVDEMIREADIDGDNQINYTEFVKMMMQK 155          
BLAST of CB304523 vs. ExPASy Swiss-Prot
Match: CALM_PLAFA (Calmodulin OS=Plasmodium falciparum PE=3 SV=4)

HSP 1 Score: 125.176 bits (313), Expect = 2.628e-28
Identity = 60/72 (83.33%), Postives = 69/72 (95.83%), Query Frame = -1
Query:  392 EDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 607
            +DTD+EEEL EAFRVFD+D +G+ISA ELRHVMTNLGEKLT+EEVDEMIREAD+DGDGQINYEEFVK+M+AK
Sbjct:   78 KDTDTEEELIEAFRVFDRDGDGYISADELRHVMTNLGEKLTNEEVDEMIREADIDGDGQINYEEFVKMMIAK 149          
BLAST of CB304523 vs. ExPASy Swiss-Prot
Match: CALM_PLAF7 (Calmodulin OS=Plasmodium falciparum (isolate 3D7) GN=PF14_0323 PE=3 SV=2)

HSP 1 Score: 125.176 bits (313), Expect = 2.628e-28
Identity = 60/72 (83.33%), Postives = 69/72 (95.83%), Query Frame = -1
Query:  392 EDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 607
            +DTD+EEEL EAFRVFD+D +G+ISA ELRHVMTNLGEKLT+EEVDEMIREAD+DGDGQINYEEFVK+M+AK
Sbjct:   78 KDTDTEEELIEAFRVFDRDGDGYISADELRHVMTNLGEKLTNEEVDEMIREADIDGDGQINYEEFVKMMIAK 149          
BLAST of CB304523 vs. ExPASy Swiss-Prot
Match: CALMA_ARBPU (Calmodulin-alpha (Fragment) OS=Arbacia punctulata PE=2 SV=2)

HSP 1 Score: 124.79 bits (312), Expect = 3.432e-28
Identity = 58/65 (89.23%), Postives = 64/65 (98.46%), Query Frame = -1
Query:  413 EDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEF 607
            +DTDSEEE++EAFRVFDKD NG+ISAAELRHVMTNLGEKLTDEEVDEMIREAD+DGDGQ+NYEEF
Sbjct:   78 KDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEF 142          
BLAST of CB304523 vs. ExPASy Swiss-Prot
Match: CALL3_HUMAN (Calmodulin-like protein 3 OS=Homo sapiens GN=CALML3 PE=1 SV=2)

HSP 1 Score: 124.405 bits (311), Expect = 4.482e-28
Identity = 57/72 (79.17%), Postives = 68/72 (94.44%), Query Frame = -1
Query:  392 EDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 607
            +DTD+EEE++EAFRVFDKD NGF+SAAELRHVMT LGEKL+DEEVDEMIR AD DGDGQ+NYEEFV+V+++K
Sbjct:   78 KDTDNEEEIREAFRVFDKDGNGFVSAAELRHVMTRLGEKLSDEEVDEMIRAADTDGDGQVNYEEFVRVLVSK 149          
BLAST of CB304523 vs. ExPASy Swiss-Prot
Match: CALM_DICDI (Calmodulin OS=Dictyostelium discoideum GN=calA PE=1 SV=3)

HSP 1 Score: 124.02 bits (310), Expect = 5.854e-28
Identity = 56/72 (77.78%), Postives = 70/72 (97.22%), Query Frame = -1
Query:  392 EDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 607
            +DTD+EEE++EAF+VFDKD NG+ISAAELRHVMT+LGEKLT+EEVDEMIREAD+DGDGQ+NY+EFVK+M+ +
Sbjct:   80 QDTDTEEEIREAFKVFDKDGNGYISAAELRHVMTSLGEKLTNEEVDEMIREADLDGDGQVNYDEFVKMMIVR 151          
BLAST of CB304523 vs. ExPASy Swiss-Prot
Match: CML11_ARATH (Calmodulin-like protein 11 OS=Arabidopsis thaliana GN=CML11 PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 7.646e-28
Identity = 55/70 (78.57%), Postives = 69/70 (98.57%), Query Frame = -1
Query:  398 EDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMM 607
            ++TD++EELKEAF+VFDKDQNG+ISA+ELRHVM NLGEKLTDEEVD+MI+EAD+DGDGQ+NY+EFV++MM
Sbjct:  101 QETDADEELKEAFKVFDKDQNGYISASELRHVMINLGEKLTDEEVDQMIKEADLDGDGQVNYDEFVRMMM 170          
BLAST of CB304523 vs. ExPASy Swiss-Prot
Match: CALM_PNECA (Calmodulin OS=Pneumocystis carinii PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 7.646e-28
Identity = 59/72 (81.94%), Postives = 67/72 (93.06%), Query Frame = -1
Query:  392 EDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 607
            +D DSEEE++EAF+VFDKD NG ISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDG I+Y EFVK+M++K
Sbjct:   80 KDVDSEEEIREAFKVFDKDGNGIISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGVIDYSEFVKMMLSK 151          
BLAST of CB304523 vs. ExPASy Swiss-Prot
Match: CALM_CHLRE (Calmodulin OS=Chlamydomonas reinhardtii PE=1 SV=2)

HSP 1 Score: 122.865 bits (307), Expect = 1.304e-27
Identity = 57/69 (82.61%), Postives = 67/69 (97.10%), Query Frame = -1
Query:  401 EDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 607
            ++TD E+EL+EAF+VFDKD NGFISAAELRHVMTNLGEKL++EEVDEMIREADVDGDGQ+NYEEFV++M
Sbjct:   81 KETDHEDELREAFKVFDKDGNGFISAAELRHVMTNLGEKLSEEEVDEMIREADVDGDGQVNYEEFVRMM 149          
The following BLAST results are available for this feature:
BLAST of CB304523 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 272
Match NameE-valueIdentityDescription
CALN_CHICK2.012e-2889.23Neo-calmodulin (Fragment) OS=Gallus gallus PE=2 SV... [more]
CALMF_NAEGR2.012e-2883.33Calmodulin, flagellar OS=Naegleria gruberi GN=CAM1... [more]
CALM_PLAFA2.628e-2883.33Calmodulin OS=Plasmodium falciparum PE=3 SV=4[more]
CALM_PLAF72.628e-2883.33Calmodulin OS=Plasmodium falciparum (isolate 3D7) ... [more]
CALMA_ARBPU3.432e-2889.23Calmodulin-alpha (Fragment) OS=Arbacia punctulata ... [more]
CALL3_HUMAN4.482e-2879.17Calmodulin-like protein 3 OS=Homo sapiens GN=CALML... [more]
CALM_DICDI5.854e-2877.78Calmodulin OS=Dictyostelium discoideum GN=calA PE=... [more]
CML11_ARATH7.646e-2878.57Calmodulin-like protein 11 OS=Arabidopsis thaliana... [more]
CALM_PNECA7.646e-2881.94Calmodulin OS=Pneumocystis carinii PE=3 SV=1[more]
CALM_CHLRE1.304e-2782.61Calmodulin OS=Chlamydomonas reinhardtii PE=1 SV=2[more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0001_IVaR_A12 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IVaR_A12 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304523 ID=CB304523; Name=CB304523; organism=Citrus sinensis; type=EST; length=613bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATAGGCCAAGAAACCTAAGC
TGATAGTCTGATACATAAAATAGGATACATATTTCGACCAAAAGAAAAAT
AAACATCGCAAGGGCAGAAATTAATGAAACACATTAAACAGACAACAACA
TTCATAGAACAGCAGAACAACTAAAATAATAAAAACCGAAAAGTTTTTCG
AGTCACAAGACATATTGACGAGGGAGACAACATTCTTCCTACACCATCAG
GCCCATCACCATTAAAAGACCATTGCTTCCTTTAGCCTGACCCTCATGAC
TATCAAATTAAAAATTGTAAAAGAGAAAACTAGGAATCCCTTTATAATTT
AGTCAACCCATTTTATAAGTATTGGTGGGTTGGGGTCATTACTTGGCCAT
CATAACCTTGACAAATTCCTCATAATTTATCTGGCCATCACCATCAACAT
CAGCTTCCCTTATCATCTCATCAACTTCTTCATCAGTAAGTTTCTCTCCT
AGGTTTGTCATCACATGGCGCAACTCAGCAGCTGAGATGAAACCATTCTG
ATCCTTGTCGAAAACCCGGAAGGCCTCTTTCAGCTCCTCCTCAGAGTCGG
TATCCTCATCTTC
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