CB304523

Overview
NameCB304523
Unique NameCB304523
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length613
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB304523 vs. ExPASy Swiss-Prot
Match: CALM_PARTE (Calmodulin OS=Paramecium tetraurelia GN=CAM PE=1 SV=3)

HSP 1 Score: 120.939 bits (302), Expect = 4.956e-27
Identity = 57/72 (79.17%), Postives = 67/72 (93.06%), Query Frame = -1
Query:  392 EDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 607
            ++ DSEEEL EAF+VFD+D NG ISAAELRHVMTNLGEKLTD+EVDEMIREAD+DGDG INYEEFV++M++K
Sbjct:   78 KEQDSEEELIEAFKVFDRDGNGLISAAELRHVMTNLGEKLTDDEVDEMIREADIDGDGHINYEEFVRMMVSK 149          
BLAST of CB304523 vs. ExPASy Swiss-Prot
Match: CML8_ARATH (Calmodulin-like protein 8 OS=Arabidopsis thaliana GN=CML8 PE=1 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 1.883e-26
Identity = 53/70 (75.71%), Postives = 68/70 (97.14%), Query Frame = -1
Query:  398 EDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMM 607
            +++D+EEELKEAF+VFDKDQNG+ISA+EL HVM NLGEKLTDEEV++MI+EAD+DGDGQ+NY+EFVK+M+
Sbjct:   79 QESDAEEELKEAFKVFDKDQNGYISASELSHVMINLGEKLTDEEVEQMIKEADLDGDGQVNYDEFVKMMI 148          
BLAST of CB304523 vs. ExPASy Swiss-Prot
Match: CML5_ORYSJ (Calmodulin-like protein 5 OS=Oryza sativa subsp. japonica GN=CML5 PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 1.763e-24
Identity = 51/72 (70.83%), Postives = 66/72 (91.67%), Query Frame = -1
Query:  398 EDEDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMM 613
            +D    ++EEL+EAF+VFDKDQ+G ISAAELRHVM +LGEKLTDEEV++MIREAD+DGDGQ+N++EFV++MM
Sbjct:   91 DDSGDAADEELREAFKVFDKDQDGLISAAELRHVMISLGEKLTDEEVEQMIREADLDGDGQVNFDEFVRMMM 162          
BLAST of CB304523 vs. ExPASy Swiss-Prot
Match: CML4_ORYSJ (Calmodulin-like protein 4 OS=Oryza sativa subsp. japonica GN=CML4 PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 6.698e-24
Identity = 52/69 (75.36%), Postives = 60/69 (86.96%), Query Frame = -1
Query:  401 EDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 607
            +D D +EELKEAF V DKDQNGFIS  ELR VMTNLGEK+TDEEV++MIREAD DGDGQ+NY+EFV +M
Sbjct:   77 KDGDGDEELKEAFEVLDKDQNGFISPTELRTVMTNLGEKMTDEEVEQMIREADTDGDGQVNYDEFVIMM 145          
BLAST of CB304523 vs. ExPASy Swiss-Prot
Match: CML2_ORYSJ (Putative calmodulin-like protein 2 OS=Oryza sativa subsp. japonica GN=CML2 PE=3 SV=2)

HSP 1 Score: 108.227 bits (269), Expect = 3.324e-23
Identity = 49/71 (69.01%), Postives = 62/71 (87.32%), Query Frame = -1
Query:  392 DTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 604
            DT +E++++EAFRVFDKDQNGFI+  ELRHVM NLG+ L+D+E+ +M+ EAD DGDGQINY EF+KVMMAK
Sbjct:   78 DTGAEDDIREAFRVFDKDQNGFITPDELRHVMANLGDPLSDDELADMLHEADSDGDGQINYNEFLKVMMAK 148          
BLAST of CB304523 vs. ExPASy Swiss-Prot
Match: CALL_DROME (Calmodulin-related protein 97A OS=Drosophila melanogaster GN=And PE=1 SV=2)

HSP 1 Score: 108.227 bits (269), Expect = 3.324e-23
Identity = 50/71 (70.42%), Postives = 62/71 (87.32%), Query Frame = -1
Query:  392 DTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 604
            +TD+EEE++EAF++FD+D +GFIS AELR VM NLGEK+TDEE+DEMIREAD DGDG INYEEFV ++  K
Sbjct:   78 ETDTEEEMREAFKIFDRDGDGFISPAELRFVMINLGEKVTDEEIDEMIREADFDGDGMINYEEFVWMISQK 148          
BLAST of CB304523 vs. ExPASy Swiss-Prot
Match: CML3_ORYSJ (Calmodulin-like protein 3 OS=Oryza sativa subsp. japonica GN=CML3 PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 3.675e-22
Identity = 47/71 (66.20%), Postives = 61/71 (85.92%), Query Frame = -1
Query:  392 DTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 604
            DT +E+++++AFRVFDKDQNGFI+  ELRHVM NL + L+D+E+ +M+ EAD DGDGQINY EF+KVMMAK
Sbjct:   78 DTGAEDDIRDAFRVFDKDQNGFITPDELRHVMANLSDPLSDDELADMLHEADSDGDGQINYNEFLKVMMAK 148          
BLAST of CB304523 vs. ExPASy Swiss-Prot
Match: CALM_SCHPO (Calmodulin OS=Schizosaccharomyces pombe GN=cam1 PE=1 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.069e-21
Identity = 47/72 (65.28%), Postives = 62/72 (86.11%), Query Frame = -1
Query:  392 EDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 607
            +DTD+EEE++EAF+VFDKD NG+I+  EL HV+T+LGE+L+ EEV +MIREAD DGDG INYEEF +V+ +K
Sbjct:   79 KDTDNEEEVREAFKVFDKDGNGYITVEELTHVLTSLGERLSQEEVADMIREADTDGDGVINYEEFSRVISSK 150          
BLAST of CB304523 vs. ExPASy Swiss-Prot
Match: CABO_LOLPE (Squidulin OS=Loligo pealeii PE=1 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.397e-21
Identity = 50/71 (70.42%), Postives = 58/71 (81.69%), Query Frame = -1
Query:  392 TDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLG-EKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 601
            TD E+E++EAFRVFDKD NG I+AAELR VM N   EKLT EE+ EMIREAD+DGDG +NYEEFVK+M  K
Sbjct:   79 TDPEKEMREAFRVFDKDGNGLITAAELRQVMANFSDEKLTSEEISEMIREADIDGDGMVNYEEFVKMMTPK 149          

HSP 2 Score: 69.3218 bits (168), Expect = 1.711e-11
Identity = 36/65 (55.38%), Postives = 48/65 (73.85%), Query Frame = -1
Query:  392 ELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 586
            E+K+AF +FD D +G I++ ELR VM +LG   +D E++EMIRE D DG+G I Y EFV+ MMAK
Sbjct:   11 EIKDAFDMFDIDGDGQITSKELRSVMKSLGRTPSDAELEEMIREVDTDGNGTIEYAEFVE-MMAK 74          
BLAST of CB304523 vs. ExPASy Swiss-Prot
Match: CML10_ARATH (Calmodulin-like protein 10 OS=Arabidopsis thaliana GN=CML10 PE=1 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.544e-20
Identity = 48/72 (66.67%), Postives = 61/72 (84.72%), Query Frame = -1
Query:  392 EDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 607
            +DT SE++LK+ FR+FD D+NGFISAAE+R+V T L  K TDEE+DE+I+ ADVDGDGQINY EF ++MMAK
Sbjct:   75 KDTYSEKDLKKDFRLFDIDKNGFISAAEMRYVRTILRWKQTDEEIDEIIKAADVDGDGQINYREFARLMMAK 146          
The following BLAST results are available for this feature:
BLAST of CB304523 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 272
Match NameE-valueIdentityDescription
CALM_PARTE4.956e-2779.17Calmodulin OS=Paramecium tetraurelia GN=CAM PE=1 S... [more]
CML8_ARATH1.883e-2675.71Calmodulin-like protein 8 OS=Arabidopsis thaliana ... [more]
CML5_ORYSJ1.763e-2470.83Calmodulin-like protein 5 OS=Oryza sativa subsp. j... [more]
CML4_ORYSJ6.698e-2475.36Calmodulin-like protein 4 OS=Oryza sativa subsp. j... [more]
CML2_ORYSJ3.324e-2369.01Putative calmodulin-like protein 2 OS=Oryza sativa... [more]
CALL_DROME3.324e-2370.42Calmodulin-related protein 97A OS=Drosophila melan... [more]
CML3_ORYSJ3.675e-2266.20Calmodulin-like protein 3 OS=Oryza sativa subsp. j... [more]
CALM_SCHPO1.069e-2165.28Calmodulin OS=Schizosaccharomyces pombe GN=cam1 PE... [more]
CABO_LOLPE1.397e-2170.42Squidulin OS=Loligo pealeii PE=1 SV=1[more]
CML10_ARATH1.544e-2066.67Calmodulin-like protein 10 OS=Arabidopsis thaliana... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0001_IVaR_A12 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IVaR_A12 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304523 ID=CB304523; Name=CB304523; organism=Citrus sinensis; type=EST; length=613bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATAGGCCAAGAAACCTAAGC
TGATAGTCTGATACATAAAATAGGATACATATTTCGACCAAAAGAAAAAT
AAACATCGCAAGGGCAGAAATTAATGAAACACATTAAACAGACAACAACA
TTCATAGAACAGCAGAACAACTAAAATAATAAAAACCGAAAAGTTTTTCG
AGTCACAAGACATATTGACGAGGGAGACAACATTCTTCCTACACCATCAG
GCCCATCACCATTAAAAGACCATTGCTTCCTTTAGCCTGACCCTCATGAC
TATCAAATTAAAAATTGTAAAAGAGAAAACTAGGAATCCCTTTATAATTT
AGTCAACCCATTTTATAAGTATTGGTGGGTTGGGGTCATTACTTGGCCAT
CATAACCTTGACAAATTCCTCATAATTTATCTGGCCATCACCATCAACAT
CAGCTTCCCTTATCATCTCATCAACTTCTTCATCAGTAAGTTTCTCTCCT
AGGTTTGTCATCACATGGCGCAACTCAGCAGCTGAGATGAAACCATTCTG
ATCCTTGTCGAAAACCCGGAAGGCCTCTTTCAGCTCCTCCTCAGAGTCGG
TATCCTCATCTTC
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