CB304523

Overview
NameCB304523
Unique NameCB304523
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length613
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB304523 vs. ExPASy Swiss-Prot
Match: CML6_ORYSJ (Putative calmodulin-like protein 6 OS=Oryza sativa subsp. japonica GN=CML6 PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 8.473e-19
Identity = 41/73 (56.16%), Postives = 60/73 (82.19%), Query Frame = -1
Query:  395 EDEDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMA 613
            E++  D EEEL++AFR+FDKD NGFIS  EL  VM +LGE++T++E+D+M++ AD + DGQ++YEEF +VMM+
Sbjct:   79 ENDKGDDEEELRKAFRIFDKDDNGFISRNELSMVMASLGEEMTEDEIDDMMKAADSNNDGQVDYEEFKRVMMS 151          
BLAST of CB304523 vs. ExPASy Swiss-Prot
Match: CALM_CANAL (Calmodulin OS=Candida albicans GN=CMD1 PE=3 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 1.888e-18
Identity = 41/72 (56.94%), Postives = 61/72 (84.72%), Query Frame = -1
Query:  392 EDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 607
            +DTDSE E+ EAF+VFD++ +G ISAAELRH++T++GEKL+D +VD+MI+EAD + DG+I+ +EF  ++ AK
Sbjct:   78 KDTDSEAEIAEAFKVFDRNGDGKISAAELRHLLTSIGEKLSDADVDQMIKEADTNNDGEIDIQEFTSLLAAK 149          
BLAST of CB304523 vs. ExPASy Swiss-Prot
Match: CALL_CAEEL (Calmodulin-like protein OS=Caenorhabditis elegans GN=cal-1 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 5.492e-18
Identity = 43/69 (62.32%), Postives = 58/69 (84.06%), Query Frame = -1
Query:  401 EDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 607
            ++TDSE  ++EAFRVFDKD NG I+A E R+ M ++G + ++EEVDEMI+E DVDGDG+I+YEEFVK+M
Sbjct:   91 KETDSEM-IREAFRVFDKDGNGVITAQEFRYFMVHMGMQFSEEEVDEMIKEVDVDGDGEIDYEEFVKMM 158          

HSP 2 Score: 68.1662 bits (165), Expect = 3.812e-11
Identity = 32/63 (50.79%), Postives = 44/63 (69.84%), Query Frame = -1
Query:  401 EELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 589
            +E +EAF +FDKD NG IS  EL   M +LG+  T++E+ EMI E D+DG+GQI + EF  +M
Sbjct:   24 DEFREAFMMFDKDGNGTISTKELGIAMRSLGQNPTEQEILEMINEVDIDGNGQIEFPEFCVMM 86          
BLAST of CB304523 vs. ExPASy Swiss-Prot
Match: CALM_KLULA (Calmodulin OS=Kluyveromyces lactis GN=CMD1 PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.353e-16
Identity = 41/66 (62.12%), Postives = 55/66 (83.33%), Query Frame = -1
Query:  401 DSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 598
            DSE+EL EAF+VFDK+ +G ISAAEL+HV+T++GEKLTD EVDEM+RE   DG G+IN ++F  ++
Sbjct:   81 DSEQELLEAFKVFDKNGDGLISAAELKHVLTSIGEKLTDAEVDEMLREVS-DGSGEINIKQFAALL 145          
BLAST of CB304523 vs. ExPASy Swiss-Prot
Match: CALM_YEAST (Calmodulin OS=Saccharomyces cerevisiae GN=CMD1 PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.767e-16
Identity = 40/69 (57.97%), Postives = 56/69 (81.16%), Query Frame = -1
Query:  401 EDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 607
            +  DSE+EL EAF+VFDK+ +G ISAAEL+HV+T++GEKLTD EVD+M+RE   DG G+IN ++F  ++
Sbjct:   78 KSNDSEQELLEAFKVFDKNGDGLISAAELKHVLTSIGEKLTDAEVDDMLREVS-DGSGEINIQQFAALL 145          
BLAST of CB304523 vs. ExPASy Swiss-Prot
Match: CETN1_MOUSE (Centrin-1 OS=Mus musculus GN=Cetn1 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.332e-15
Identity = 38/68 (55.88%), Postives = 51/68 (75.00%), Query Frame = -1
Query:  401 DTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 604
            + D++EE+ +AFR+FD D+ G IS   L+ V   LGE LTDEE+ EMI EAD DGDG++N EEF+K+M
Sbjct:   99 EKDTKEEILKAFRLFDDDETGKISFKNLKRVANELGESLTDEELQEMIDEADRDGDGEVNEEEFLKIM 166          
BLAST of CB304523 vs. ExPASy Swiss-Prot
Match: CATR_SPESI (Caltractin (Fragment) OS=Spermatozopsis similis PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.332e-15
Identity = 39/68 (57.35%), Postives = 49/68 (72.06%), Query Frame = -1
Query:  401 DTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 604
            + DS EE+ +AFR+FD DQ G I+   L+ V   LGE LTDEE+ EMI EAD DGDG+IN EEF ++M
Sbjct:   75 ERDSREEIMKAFRLFDDDQTGKITFKNLKRVAKELGENLTDEEIQEMIDEADRDGDGEINEEEFFRIM 142          
BLAST of CB304523 vs. ExPASy Swiss-Prot
Match: CETN1_HUMAN (Centrin-1 OS=Homo sapiens GN=CETN1 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 7.423e-15
Identity = 37/68 (54.41%), Postives = 51/68 (75.00%), Query Frame = -1
Query:  401 DTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 604
            + D++EE+ +AFR+FD D+ G IS   L+ V   LGE LTDEE+ EMI EAD DGDG++N EEF+++M
Sbjct:   99 EKDTKEEILKAFRLFDDDETGKISFKNLKRVANELGENLTDEELQEMIDEADRDGDGEVNEEEFLRIM 166          
BLAST of CB304523 vs. ExPASy Swiss-Prot
Match: CATR_TETST (Caltractin (Fragment) OS=Tetraselmis striata PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.266e-14
Identity = 37/68 (54.41%), Postives = 49/68 (72.06%), Query Frame = -1
Query:  401 DTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 604
            + DS EE+ +AFR+FD D+ G IS   L+ V   LGE +TDEE+ EMI EAD DGDG++N EEF ++M
Sbjct:   75 ERDSREEIMKAFRLFDDDETGKISFKNLKRVAKELGENMTDEELQEMIDEADRDGDGEVNEEEFFRIM 142          
BLAST of CB304523 vs. ExPASy Swiss-Prot
Match: CATR_SCHDU (Caltractin OS=Scherffelia dubia PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.266e-14
Identity = 37/68 (54.41%), Postives = 49/68 (72.06%), Query Frame = -1
Query:  401 DTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 604
            + DS EE+ +AFR+FD D+ G IS   L+ V   LGE +TDEE+ EMI EAD DGDG++N EEF ++M
Sbjct:   95 ERDSREEIMKAFRLFDDDETGKISFKNLKRVAKELGENMTDEELQEMIDEADRDGDGEVNEEEFFRIM 162          
The following BLAST results are available for this feature:
BLAST of CB304523 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 272
Match NameE-valueIdentityDescription
CML6_ORYSJ8.473e-1956.16Putative calmodulin-like protein 6 OS=Oryza sativa... [more]
CALM_CANAL1.888e-1856.94Calmodulin OS=Candida albicans GN=CMD1 PE=3 SV=2[more]
CALL_CAEEL5.492e-1862.32Calmodulin-like protein OS=Caenorhabditis elegans ... [more]
CALM_KLULA1.353e-1662.12Calmodulin OS=Kluyveromyces lactis GN=CMD1 PE=3 SV... [more]
CALM_YEAST1.767e-1657.97Calmodulin OS=Saccharomyces cerevisiae GN=CMD1 PE=... [more]
CETN1_MOUSE3.332e-1555.88Centrin-1 OS=Mus musculus GN=Cetn1 PE=2 SV=1[more]
CATR_SPESI3.332e-1557.35Caltractin (Fragment) OS=Spermatozopsis similis PE... [more]
CETN1_HUMAN7.423e-1554.41Centrin-1 OS=Homo sapiens GN=CETN1 PE=2 SV=1[more]
CATR_TETST1.266e-1454.41Caltractin (Fragment) OS=Tetraselmis striata PE=2 ... [more]
CATR_SCHDU1.266e-1454.41Caltractin OS=Scherffelia dubia PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0001_IVaR_A12 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IVaR_A12 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304523 ID=CB304523; Name=CB304523; organism=Citrus sinensis; type=EST; length=613bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATAGGCCAAGAAACCTAAGC
TGATAGTCTGATACATAAAATAGGATACATATTTCGACCAAAAGAAAAAT
AAACATCGCAAGGGCAGAAATTAATGAAACACATTAAACAGACAACAACA
TTCATAGAACAGCAGAACAACTAAAATAATAAAAACCGAAAAGTTTTTCG
AGTCACAAGACATATTGACGAGGGAGACAACATTCTTCCTACACCATCAG
GCCCATCACCATTAAAAGACCATTGCTTCCTTTAGCCTGACCCTCATGAC
TATCAAATTAAAAATTGTAAAAGAGAAAACTAGGAATCCCTTTATAATTT
AGTCAACCCATTTTATAAGTATTGGTGGGTTGGGGTCATTACTTGGCCAT
CATAACCTTGACAAATTCCTCATAATTTATCTGGCCATCACCATCAACAT
CAGCTTCCCTTATCATCTCATCAACTTCTTCATCAGTAAGTTTCTCTCCT
AGGTTTGTCATCACATGGCGCAACTCAGCAGCTGAGATGAAACCATTCTG
ATCCTTGTCGAAAACCCGGAAGGCCTCTTTCAGCTCCTCCTCAGAGTCGG
TATCCTCATCTTC
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