CB304523

Overview
NameCB304523
Unique NameCB304523
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length613
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB304523 vs. ExPASy Swiss-Prot
Match: CML14_ARATH (Probable calcium-binding protein CML14 OS=Arabidopsis thaliana GN=CML14 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.654e-14
Identity = 33/67 (49.25%), Postives = 51/67 (76.12%), Query Frame = -1
Query:  392 EEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 592
            + +L++AF+V DK+  GF++ A+LRH++T++GEKL   E DE I+E DV  DG+I YE+F+  M+AK
Sbjct:   82 DRQLRDAFKVLDKEGTGFVAVADLRHILTSIGEKLQPSEFDEWIKEVDVGSDGKIRYEDFIARMVAK 148          
BLAST of CB304523 vs. ExPASy Swiss-Prot
Match: CML13_ARATH (Probable calcium-binding protein CML13 OS=Arabidopsis thaliana GN=CML13 PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.654e-14
Identity = 33/67 (49.25%), Postives = 51/67 (76.12%), Query Frame = -1
Query:  392 EEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 592
            + +L++AF+V DK+  GF++ A+LRH++T++GEKL   E DE I+E DV  DG+I YE+F+  M+AK
Sbjct:   82 DRQLRDAFKVLDKEGTGFVAVADLRHILTSIGEKLEPNEFDEWIKEVDVGSDGKIRYEDFIARMVAK 148          
BLAST of CB304523 vs. ExPASy Swiss-Prot
Match: CETN1_BOVIN (Centrin-1 OS=Bos taurus GN=CETN1 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.160e-14
Identity = 36/68 (52.94%), Postives = 51/68 (75.00%), Query Frame = -1
Query:  401 DTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 604
            + D++EE+ +AFR+FD D+ G IS   L+ V   LGE LTDEE+ EMI EAD DGDG++N +EF+++M
Sbjct:   99 EKDTKEEILKAFRLFDDDETGKISFKNLKRVAKELGENLTDEELQEMIDEADRDGDGEVNEDEFLRIM 166          
BLAST of CB304523 vs. ExPASy Swiss-Prot
Match: TNNC2_RANES (Troponin C, skeletal muscle OS=Rana esculenta PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.684e-14
Identity = 32/71 (45.07%), Postives = 54/71 (76.06%), Query Frame = -1
Query:  401 EDEDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 613
            ED    SEEEL E FR+FDK+ +G+I + EL  ++ + GE +TDEE++E++++ D + DG+I+++EF+K+M
Sbjct:   88 EDAQGKSEEELAECFRIFDKNADGYIDSEELGEILRSSGESITDEEIEELMKDGDKNNDGKIDFDEFLKMM 158          
BLAST of CB304523 vs. ExPASy Swiss-Prot
Match: MLC2_DROME (Myosin-2 essential light chain OS=Drosophila melanogaster GN=Mlc-c PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.684e-14
Identity = 36/68 (52.94%), Postives = 53/68 (77.94%), Query Frame = -1
Query:  395 DSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMA 598
            D+ ++  E  R FDKD +G+IS+AELRH++T LGEKLTDEEV++++   + D  G INYEEFV+++M+
Sbjct:   80 DTADDFIEGLRHFDKDASGYISSAELRHLLTTLGEKLTDEEVEQLLANME-DQQGNINYEEFVRMVMS 146          
BLAST of CB304523 vs. ExPASy Swiss-Prot
Match: CML17_ARATH (Probable calcium-binding protein CML17 OS=Arabidopsis thaliana GN=CML17 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.684e-14
Identity = 37/65 (56.92%), Postives = 47/65 (72.31%), Query Frame = -1
Query:  401 SEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 595
            +EE+L   FR+FD D NGFI+AAEL H M  LG  LT  E+  MI+EAD DGDG+IN++EF K +
Sbjct:   92 TEEQLLRLFRIFDTDGNGFITAAELAHSMAKLGHALTVAELTGMIKEADSDGDGRINFQEFAKAI 156          
BLAST of CB304523 vs. ExPASy Swiss-Prot
Match: CML7_ORYSJ (Probable calcium-binding protein CML7 OS=Oryza sativa subsp. japonica GN=CML7 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 4.811e-14
Identity = 35/67 (52.24%), Postives = 50/67 (74.63%), Query Frame = -1
Query:  392 EEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 592
            +  L++AFRV DKD +G +S A+LRHV+T++GEKL   E DE IRE DV  DG I Y++F++ ++AK
Sbjct:   82 DRPLRDAFRVLDKDASGTVSVADLRHVLTSIGEKLEPHEFDEWIREVDVAPDGTIRYDDFIRRIVAK 148          
BLAST of CB304523 vs. ExPASy Swiss-Prot
Match: CETN2_MOUSE (Centrin-2 OS=Mus musculus GN=Cetn2 PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 4.811e-14
Identity = 35/68 (51.47%), Postives = 51/68 (75.00%), Query Frame = -1
Query:  401 DTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 604
            + D++EE+ +AF++FD D+ G IS   L+ V   LGE LTDEE+ EMI EAD DGDG++N +EF+++M
Sbjct:   99 EKDTKEEILKAFKLFDDDETGKISFKNLKRVAKELGENLTDEELQEMIDEADRDGDGEVNEQEFLRIM 166          
BLAST of CB304523 vs. ExPASy Swiss-Prot
Match: TNNC_PATYE (Troponin C OS=Patinopecten yessoensis PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 6.284e-14
Identity = 37/71 (52.11%), Postives = 52/71 (73.24%), Query Frame = -1
Query:  395 EDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMA 607
            ED D E ELKEAFRV DK++ G I    LR ++++LG++LT+EE++ MI E D DG G ++YEEF  +MM+
Sbjct:   80 EDLD-ERELKEAFRVLDKEKKGVIKVDVLRWILSSLGDELTEEEIENMIAETDTDGSGTVDYEEFKCLMMS 149          
BLAST of CB304523 vs. ExPASy Swiss-Prot
Match: TNNC_TACTR (Troponin C OS=Tachypleus tridentatus PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 8.207e-14
Identity = 33/71 (46.48%), Postives = 56/71 (78.87%), Query Frame = -1
Query:  401 DEDTDS-EEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 610
            +ED ++ +EEL+EAFR++DK   GFI+ ++LR ++  L +KLT++E+DEMI E D DG G ++++EF+++M
Sbjct:   81 EEDAEAMQEELREAFRLYDKQGQGFINVSDLRDILRALDDKLTEDELDEMIAEIDTDGSGTVDFDEFMEMM 151          
The following BLAST results are available for this feature:
BLAST of CB304523 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 272
Match NameE-valueIdentityDescription
CML14_ARATH1.654e-1449.25Probable calcium-binding protein CML14 OS=Arabidop... [more]
CML13_ARATH1.654e-1449.25Probable calcium-binding protein CML13 OS=Arabidop... [more]
CETN1_BOVIN2.160e-1452.94Centrin-1 OS=Bos taurus GN=CETN1 PE=2 SV=1[more]
TNNC2_RANES3.684e-1445.07Troponin C, skeletal muscle OS=Rana esculenta PE=1... [more]
MLC2_DROME3.684e-1452.94Myosin-2 essential light chain OS=Drosophila melan... [more]
CML17_ARATH3.684e-1456.92Probable calcium-binding protein CML17 OS=Arabidop... [more]
CML7_ORYSJ4.811e-1452.24Probable calcium-binding protein CML7 OS=Oryza sat... [more]
CETN2_MOUSE4.811e-1451.47Centrin-2 OS=Mus musculus GN=Cetn2 PE=1 SV=1[more]
TNNC_PATYE6.284e-1452.11Troponin C OS=Patinopecten yessoensis PE=1 SV=1[more]
TNNC_TACTR8.207e-1446.48Troponin C OS=Tachypleus tridentatus PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0001_IVaR_A12 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IVaR_A12 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304523 ID=CB304523; Name=CB304523; organism=Citrus sinensis; type=EST; length=613bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATAGGCCAAGAAACCTAAGC
TGATAGTCTGATACATAAAATAGGATACATATTTCGACCAAAAGAAAAAT
AAACATCGCAAGGGCAGAAATTAATGAAACACATTAAACAGACAACAACA
TTCATAGAACAGCAGAACAACTAAAATAATAAAAACCGAAAAGTTTTTCG
AGTCACAAGACATATTGACGAGGGAGACAACATTCTTCCTACACCATCAG
GCCCATCACCATTAAAAGACCATTGCTTCCTTTAGCCTGACCCTCATGAC
TATCAAATTAAAAATTGTAAAAGAGAAAACTAGGAATCCCTTTATAATTT
AGTCAACCCATTTTATAAGTATTGGTGGGTTGGGGTCATTACTTGGCCAT
CATAACCTTGACAAATTCCTCATAATTTATCTGGCCATCACCATCAACAT
CAGCTTCCCTTATCATCTCATCAACTTCTTCATCAGTAAGTTTCTCTCCT
AGGTTTGTCATCACATGGCGCAACTCAGCAGCTGAGATGAAACCATTCTG
ATCCTTGTCGAAAACCCGGAAGGCCTCTTTCAGCTCCTCCTCAGAGTCGG
TATCCTCATCTTC
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