CB304523

Overview
NameCB304523
Unique NameCB304523
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length613
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB304523 vs. ExPASy Swiss-Prot
Match: CML11_ORYSJ (Probable calcium-binding protein CML11 OS=Oryza sativa subsp. japonica GN=CML11 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 8.207e-14
Identity = 34/67 (50.75%), Postives = 50/67 (74.63%), Query Frame = -1
Query:  395 SEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMA 595
            SE++++  F +FD+D NGFI+AAEL H M  LG  LT +E+  MI+EAD DGDG+I+++EF + + A
Sbjct:  137 SEDQIRRLFNIFDRDGNGFITAAELAHSMAKLGHALTVKELTGMIKEADTDGDGRISFQEFSRAITA 203          
BLAST of CB304523 vs. ExPASy Swiss-Prot
Match: TNNC2_CAEEL (Troponin C, isoform 2 OS=Caenorhabditis elegans GN=tnc-2 PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.072e-13
Identity = 31/70 (44.29%), Postives = 54/70 (77.14%), Query Frame = -1
Query:  401 DEDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 610
            + D   EEEL+EAFR++DK+ NG+I+ ++LR ++  L + +++EE+DEMI E D DG G ++++EF+++M
Sbjct:   88 ENDEGLEEELREAFRLYDKEGNGYINVSDLRDILRALDDNVSEEELDEMIAEIDADGSGTVDFDEFMEMM 157          
BLAST of CB304523 vs. ExPASy Swiss-Prot
Match: MLE_PATYE (Myosin, essential light chain, adductor muscle OS=Patinopecten yessoensis PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.072e-13
Identity = 37/63 (58.73%), Postives = 49/63 (77.78%), Query Frame = -1
Query:  395 EAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADV--DGDGQINYEEFVKVMMA 577
            EAF+ FD++  GFIS AELRHV+T LGE+LTDEE+DE+I   D+  D +G + YE+FVK +MA
Sbjct:   88 EAFKTFDREGQGFISGAELRHVLTALGERLTDEEIDEIISLTDLQEDLEGNVKYEDFVKKVMA 150          
BLAST of CB304523 vs. ExPASy Swiss-Prot
Match: CALL5_HUMAN (Calmodulin-like protein 5 OS=Homo sapiens GN=CALML5 PE=1 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 1.072e-13
Identity = 35/63 (55.56%), Postives = 47/63 (74.60%), Query Frame = -1
Query:  401 EELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 589
            E+L+ AFR FD+D +G I+  ELR  M  LG+ L  EE+D MIREADVD DG++NYEEF +++
Sbjct:   81 EDLQVAFRAFDQDGDGHITVDELRRAMAGLGQPLPQEELDAMIREADVDQDGRVNYEEFARML 143          
BLAST of CB304523 vs. ExPASy Swiss-Prot
Match: CML18_ORYSJ (Probable calcium-binding protein CML18 OS=Oryza sativa subsp. japonica GN=CML18 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.400e-13
Identity = 35/71 (49.30%), Postives = 49/71 (69.01%), Query Frame = -1
Query:  401 EDEDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 613
            +D++  SE EL+EAFR++D D NG ISA EL  V+  LG+K +  +   MIR  D DGDG +N++EF K+M
Sbjct:   81 KDQEAASEAELREAFRMYDADSNGKISARELHRVLRQLGDKCSVADCSRMIRSVDADGDGCVNFDEFKKMM 151          
BLAST of CB304523 vs. ExPASy Swiss-Prot
Match: CML18_ARATH (Probable calcium-binding protein CML18 OS=Arabidopsis thaliana GN=CML18 PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.400e-13
Identity = 35/65 (53.85%), Postives = 50/65 (76.92%), Query Frame = -1
Query:  401 SEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 595
            ++++LK  FR+FD+D NG+I+AAEL H M  LG  LT EE+  MI+EAD DGDG I+++EFV+ +
Sbjct:   91 TDDQLKAIFRMFDRDGNGYITAAELAHSMAKLGHALTAEELTGMIKEADRDGDGCIDFQEFVQAI 155          
BLAST of CB304523 vs. ExPASy Swiss-Prot
Match: CETN2_BOVIN (Centrin-2 OS=Bos taurus GN=CETN2 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.400e-13
Identity = 34/68 (50.00%), Postives = 51/68 (75.00%), Query Frame = -1
Query:  401 DTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 604
            + D++EE+ +AF++FD D+ G IS   L+ V   LGE L+DEE+ EMI EAD DGDG++N +EF+++M
Sbjct:   99 EKDTKEEILKAFKLFDDDETGKISFKNLKRVAKELGENLSDEELQEMIDEADRDGDGEVNEQEFLRIM 166          
BLAST of CB304523 vs. ExPASy Swiss-Prot
Match: CETN2_HUMAN (Centrin-2 OS=Homo sapiens GN=CETN2 PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.828e-13
Identity = 34/68 (50.00%), Postives = 51/68 (75.00%), Query Frame = -1
Query:  401 DTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 604
            + D++EE+ +AF++FD D+ G IS   L+ V   LGE LTDEE+ EMI EAD DGDG+++ +EF+++M
Sbjct:   99 EKDTKEEILKAFKLFDDDETGKISFKNLKRVAKELGENLTDEELQEMIDEADRDGDGEVSEQEFLRIM 166          
BLAST of CB304523 vs. ExPASy Swiss-Prot
Match: MLE_AEQIR (Myosin essential light chain, striated adductor muscle OS=Aequipecten irradians PE=1 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 2.388e-13
Identity = 36/63 (57.14%), Postives = 50/63 (79.37%), Query Frame = -1
Query:  395 EAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADV--DGDGQINYEEFVKVMMA 577
            EAF+ FD++  GFIS AELRHV+T LGE+L+DE+VDE+I+  D+  D +G + YE+FVK +MA
Sbjct:   89 EAFKTFDREGQGFISGAELRHVLTALGERLSDEDVDEIIKLTDLQEDLEGNVKYEDFVKKVMA 151          
BLAST of CB304523 vs. ExPASy Swiss-Prot
Match: CML14_ORYSJ (Probable calcium-binding protein CML14 OS=Oryza sativa subsp. japonica GN=CML14 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.388e-13
Identity = 36/64 (56.25%), Postives = 46/64 (71.88%), Query Frame = -1
Query:  401 EEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 592
            + +L E FR FD+D NGFISAAEL   M  LG+ LT EE+  M+R+AD DGDG I+++EF  VM
Sbjct:   99 QAQLLEVFRAFDRDGNGFISAAELARSMARLGQPLTFEELTRMMRDADTDGDGVISFKEFAAVM 162          
The following BLAST results are available for this feature:
BLAST of CB304523 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 272
Match NameE-valueIdentityDescription
CML11_ORYSJ8.207e-1450.75Probable calcium-binding protein CML11 OS=Oryza sa... [more]
TNNC2_CAEEL1.072e-1344.29Troponin C, isoform 2 OS=Caenorhabditis elegans GN... [more]
MLE_PATYE1.072e-1358.73Myosin, essential light chain, adductor muscle OS=... [more]
CALL5_HUMAN1.072e-1355.56Calmodulin-like protein 5 OS=Homo sapiens GN=CALML... [more]
CML18_ORYSJ1.400e-1349.30Probable calcium-binding protein CML18 OS=Oryza sa... [more]
CML18_ARATH1.400e-1353.85Probable calcium-binding protein CML18 OS=Arabidop... [more]
CETN2_BOVIN1.400e-1350.00Centrin-2 OS=Bos taurus GN=CETN2 PE=2 SV=1[more]
CETN2_HUMAN1.828e-1350.00Centrin-2 OS=Homo sapiens GN=CETN2 PE=1 SV=1[more]
MLE_AEQIR2.388e-1357.14Myosin essential light chain, striated adductor mu... [more]
CML14_ORYSJ2.388e-1356.25Probable calcium-binding protein CML14 OS=Oryza sa... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0001_IVaR_A12 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IVaR_A12 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304523 ID=CB304523; Name=CB304523; organism=Citrus sinensis; type=EST; length=613bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATAGGCCAAGAAACCTAAGC
TGATAGTCTGATACATAAAATAGGATACATATTTCGACCAAAAGAAAAAT
AAACATCGCAAGGGCAGAAATTAATGAAACACATTAAACAGACAACAACA
TTCATAGAACAGCAGAACAACTAAAATAATAAAAACCGAAAAGTTTTTCG
AGTCACAAGACATATTGACGAGGGAGACAACATTCTTCCTACACCATCAG
GCCCATCACCATTAAAAGACCATTGCTTCCTTTAGCCTGACCCTCATGAC
TATCAAATTAAAAATTGTAAAAGAGAAAACTAGGAATCCCTTTATAATTT
AGTCAACCCATTTTATAAGTATTGGTGGGTTGGGGTCATTACTTGGCCAT
CATAACCTTGACAAATTCCTCATAATTTATCTGGCCATCACCATCAACAT
CAGCTTCCCTTATCATCTCATCAACTTCTTCATCAGTAAGTTTCTCTCCT
AGGTTTGTCATCACATGGCGCAACTCAGCAGCTGAGATGAAACCATTCTG
ATCCTTGTCGAAAACCCGGAAGGCCTCTTTCAGCTCCTCCTCAGAGTCGG
TATCCTCATCTTC
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