CB304523

Overview
NameCB304523
Unique NameCB304523
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length613
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB304523 vs. ExPASy Swiss-Prot
Match: CATR_DUNSA (Caltractin OS=Dunaliella salina PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.119e-13
Identity = 35/68 (51.47%), Postives = 48/68 (70.59%), Query Frame = -1
Query:  401 DTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 604
            + DS EE+ +AF++FD D  GFI+   L+ V   LGE LTDEE+ EM  EAD +GDGQI+ +EF ++M
Sbjct:   96 ERDSREEIIKAFKLFDDDNTGFITLKNLKRVAKELGENLTDEELQEMTDEADRNGDGQIDEDEFYRIM 163          
BLAST of CB304523 vs. ExPASy Swiss-Prot
Match: CALGL_BOTIN (Calglandulin OS=Bothrops insularis PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.119e-13
Identity = 33/70 (47.14%), Postives = 51/70 (72.86%), Query Frame = -1
Query:  401 DEDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 610
            ++  + +EEL+ AF+VFDK+  G+I    L++V+ N GE L ++E + M++EAD DGDG I+YEEFV +M
Sbjct:   78 EKSKNQDEELRAAFKVFDKEHKGYIEWDTLKYVLMNAGEPLNEQEAELMMKEADKDGDGTIDYEEFVAMM 147          
BLAST of CB304523 vs. ExPASy Swiss-Prot
Match: ALL8_OLEEU (Calcium-binding allergen Ole e 8 OS=Olea europaea PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.119e-13
Identity = 33/67 (49.25%), Postives = 47/67 (70.15%), Query Frame = -1
Query:  392 EEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 592
            E ELKEAF ++D+D NG IS+ EL  ++T LGE+  + +  EMI+  D DGDG +++EEF K+M  K
Sbjct:   94 ENELKEAFELYDQDHNGLISSVELHKILTRLGERYAEHDCVEMIKSVDSDGDGYVSFEEFKKMMTNK 160          
BLAST of CB304523 vs. ExPASy Swiss-Prot
Match: SM20_SCHMA (20 kDa calcium-binding protein OS=Schistosoma mansoni GN=SM20 PE=2 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 4.073e-13
Identity = 33/74 (44.59%), Postives = 54/74 (72.97%), Query Frame = -1
Query:  392 EDEDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 613
            ED+D   E +L++AFRV DK++ G I   +LR ++  LG+ LT+EE+D+MIR+ D DG G ++++EF K+M ++
Sbjct:   84 EDQD---ERDLRDAFRVLDKNKRGEIDVEDLRWILKGLGDDLTEEEIDDMIRDTDTDGSGFVDFDEFYKLMTSE 154          
BLAST of CB304523 vs. ExPASy Swiss-Prot
Match: MLR_PHYPO (Myosin regulatory light chain OS=Physarum polycephalum PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.073e-13
Identity = 33/68 (48.53%), Postives = 48/68 (70.59%), Query Frame = -1
Query:  398 TDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMM 601
            T+  +E+ +AFR  DK+ NG I  AELR ++ NLG+ LT  EV+E+++E  V GDG INYE FV +++
Sbjct:   72 TEQSKEMLDAFRALDKEGNGTIQEAELRQLLLNLGDALTSSEVEELMKEVSVSGDGAINYESFVDMLV 139          
BLAST of CB304523 vs. ExPASy Swiss-Prot
Match: CML6_ARATH (Calmodulin-like protein 6 OS=Arabidopsis thaliana GN=CML6 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.073e-13
Identity = 38/73 (52.05%), Postives = 54/73 (73.97%), Query Frame = -1
Query:  401 EDEDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEK--LTDEEVDEMIREADVDGDGQINYEEFVKVM 613
            EDED   EE++KEAF VFD++ +GFI+  EL+ V+++LG K   T EE  +MI + DVDGDG++NY EF ++M
Sbjct:   72 EDEDEVGEEDMKEAFNVFDRNGDGFITVDELKAVLSSLGLKQGKTLEECRKMIMQVDVDGDGRVNYMEFRQMM 144          
BLAST of CB304523 vs. ExPASy Swiss-Prot
Match: CML12_ORYSJ (Probable calcium-binding protein CML12 OS=Oryza sativa subsp. japonica GN=CML12 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.073e-13
Identity = 35/64 (54.69%), Postives = 45/64 (70.31%), Query Frame = -1
Query:  401 EEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 592
            + EL EAFR FD+D NGFISAAEL   M  +G  +   E+ +M+READ DGDG I++EEF  +M
Sbjct:  173 QAELAEAFRAFDRDGNGFISAAELARSMARMGHPICYAELTDMMREADTDGDGLISFEEFTAIM 236          
BLAST of CB304523 vs. ExPASy Swiss-Prot
Match: CATR_NAEGR (Caltractin OS=Naegleria gruberi GN=CTN PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.073e-13
Identity = 34/68 (50.00%), Postives = 50/68 (73.53%), Query Frame = -1
Query:  401 DTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 604
            + DS  E+ +AFR+FD+D +GFI+ A L+ V  +LGE +TDEE+ EMI EAD    GQI+ E+F+++M
Sbjct:   99 EKDSHAEIMKAFRLFDEDDSGFITFANLKRVAKDLGENMTDEELREMIEEADRSNQGQISKEDFLRIM 166          
BLAST of CB304523 vs. ExPASy Swiss-Prot
Match: CAM2_SCHPO (Myosin 1 light chain cam2 OS=Schizosaccharomyces pombe GN=cam2 PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.073e-13
Identity = 36/71 (50.70%), Postives = 49/71 (69.01%), Query Frame = -1
Query:  392 DTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 604
            +T+SEEE  +AFRVFDKD +G+I  A+    M  LGEKL+D EV  M++EAD    G  +Y +FV+ +MAK
Sbjct:   73 ETESEEEYIKAFRVFDKDNSGYIETAKFADYMKTLGEKLSDNEVQLMVQEADPTNSGSFDYYDFVQRIMAK 143          
BLAST of CB304523 vs. ExPASy Swiss-Prot
Match: CALGL_TROCA (Calglandulin OS=Tropidechis carinatus PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 5.320e-13
Identity = 33/70 (47.14%), Postives = 50/70 (71.43%), Query Frame = -1
Query:  401 DEDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 610
            ++  + +EEL+ AF+VFDK+  G+I    L++V+ N GE L + E + M++EAD DGDG I+YEEFV +M
Sbjct:   78 EKSKNQDEELRAAFKVFDKEHKGYIEWDTLKYVLMNAGEPLNEHEAELMMKEADKDGDGTIDYEEFVAMM 147          
The following BLAST results are available for this feature:
BLAST of CB304523 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 272
Match NameE-valueIdentityDescription
CATR_DUNSA3.119e-1351.47Caltractin OS=Dunaliella salina PE=2 SV=1[more]
CALGL_BOTIN3.119e-1347.14Calglandulin OS=Bothrops insularis PE=2 SV=1[more]
ALL8_OLEEU3.119e-1349.25Calcium-binding allergen Ole e 8 OS=Olea europaea ... [more]
SM20_SCHMA4.073e-1344.5920 kDa calcium-binding protein OS=Schistosoma mans... [more]
MLR_PHYPO4.073e-1348.53Myosin regulatory light chain OS=Physarum polyceph... [more]
CML6_ARATH4.073e-1352.05Calmodulin-like protein 6 OS=Arabidopsis thaliana ... [more]
CML12_ORYSJ4.073e-1354.69Probable calcium-binding protein CML12 OS=Oryza sa... [more]
CATR_NAEGR4.073e-1350.00Caltractin OS=Naegleria gruberi GN=CTN PE=2 SV=1[more]
CAM2_SCHPO4.073e-1350.70Myosin 1 light chain cam2 OS=Schizosaccharomyces p... [more]
CALGL_TROCA5.320e-1347.14Calglandulin OS=Tropidechis carinatus PE=2 SV=1[more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionFLAVEDO0001_IVaR_A12 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IVaR_A12 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304523 ID=CB304523; Name=CB304523; organism=Citrus sinensis; type=EST; length=613bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATAGGCCAAGAAACCTAAGC
TGATAGTCTGATACATAAAATAGGATACATATTTCGACCAAAAGAAAAAT
AAACATCGCAAGGGCAGAAATTAATGAAACACATTAAACAGACAACAACA
TTCATAGAACAGCAGAACAACTAAAATAATAAAAACCGAAAAGTTTTTCG
AGTCACAAGACATATTGACGAGGGAGACAACATTCTTCCTACACCATCAG
GCCCATCACCATTAAAAGACCATTGCTTCCTTTAGCCTGACCCTCATGAC
TATCAAATTAAAAATTGTAAAAGAGAAAACTAGGAATCCCTTTATAATTT
AGTCAACCCATTTTATAAGTATTGGTGGGTTGGGGTCATTACTTGGCCAT
CATAACCTTGACAAATTCCTCATAATTTATCTGGCCATCACCATCAACAT
CAGCTTCCCTTATCATCTCATCAACTTCTTCATCAGTAAGTTTCTCTCCT
AGGTTTGTCATCACATGGCGCAACTCAGCAGCTGAGATGAAACCATTCTG
ATCCTTGTCGAAAACCCGGAAGGCCTCTTTCAGCTCCTCCTCAGAGTCGG
TATCCTCATCTTC
back to top