CB304523

Overview
NameCB304523
Unique NameCB304523
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length613
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB304523 vs. ExPASy Swiss-Prot
Match: TNNC2_RABIT (Troponin C, skeletal muscle OS=Oryctolagus cuniculus GN=TNNC2 PE=1 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 9.074e-13
Identity = 31/71 (43.66%), Postives = 51/71 (71.83%), Query Frame = -1
Query:  401 EDEDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 613
            ED    SEEEL E FR+FD++ +G+I A EL  +    GE +TDEE++ ++++ D + DG+I+++EF+K+M
Sbjct:   86 EDAKGKSEEELAECFRIFDRNADGYIDAEELAEIFRASGEHVTDEEIESLMKDGDKNNDGRIDFDEFLKMM 156          
BLAST of CB304523 vs. ExPASy Swiss-Prot
Match: TNNC2_PIG (Troponin C, skeletal muscle OS=Sus scrofa GN=TNNC2 PE=1 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 9.074e-13
Identity = 31/71 (43.66%), Postives = 51/71 (71.83%), Query Frame = -1
Query:  401 EDEDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 613
            ED    SEEEL E FR+FD++ +G+I A EL  +    GE +TDEE++ ++++ D + DG+I+++EF+K+M
Sbjct:   85 EDAKGKSEEELAECFRIFDRNMDGYIDAEELAEIFRASGEHVTDEEIESIMKDGDKNNDGRIDFDEFLKMM 155          
BLAST of CB304523 vs. ExPASy Swiss-Prot
Match: MYL3_BOVIN (Myosin light chain 3 OS=Bos taurus GN=MYL3 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 9.074e-13
Identity = 36/73 (49.32%), Postives = 53/73 (72.60%), Query Frame = -1
Query:  395 EDEDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMA 613
            +++DT + E+  E  RVFDK+ NG +  AELRHV+  LGEKLT++EV++++   + D +G INYE FVK +MA
Sbjct:  127 KNKDTGTYEDFVEGLRVFDKEGNGTVMGAELRHVLATLGEKLTEDEVEKLMAGQE-DSNGCINYEAFVKHIMA 198          
BLAST of CB304523 vs. ExPASy Swiss-Prot
Match: CML19_ARATH (Calcium-binding protein CML19 OS=Arabidopsis thaliana GN=CML19 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 9.074e-13
Identity = 32/68 (47.06%), Postives = 48/68 (70.59%), Query Frame = -1
Query:  401 DTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 604
            + DS +EL +AF++ D D NG IS  +++ +   LGE  TD +++EMI EAD D DG++N EEF+K+M
Sbjct:   94 ERDSIDELSKAFKIIDHDNNGKISPRDIKMIAKELGENFTDNDIEEMIEEADRDKDGEVNLEEFMKMM 161          
BLAST of CB304523 vs. ExPASy Swiss-Prot
Match: CML13_ORYSJ (Probable calcium-binding protein CML13 OS=Oryza sativa subsp. japonica GN=CML13 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 9.074e-13
Identity = 30/68 (44.12%), Postives = 52/68 (76.47%), Query Frame = -1
Query:  401 DTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 604
            + DS+EEL +AF + D+D+NG IS  +++ +   LGE  T +E+ EM++EAD +GDG+I+++EF+++M
Sbjct:   95 ERDSKEELTKAFSIIDQDKNGKISDVDIQRIAKELGENFTYQEIQEMVQEADRNGDGEIDFDEFIRMM 162          

HSP 2 Score: 68.5514 bits (166), Expect = 2.919e-11
Identity = 32/66 (48.48%), Postives = 46/66 (69.70%), Query Frame = -1
Query:  392 EELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 589
            +E+KEAF +FD D +G I A EL   M  LG ++T+E++++MI + D DG G I+YEEF  +M AK
Sbjct:   27 QEIKEAFDLFDTDNSGTIDAKELNVAMRALGFEMTEEQINQMIADVDKDGSGSIDYEEFEHMMTAK 92          
BLAST of CB304523 vs. ExPASy Swiss-Prot
Match: E631_DROME (Calcium-binding protein E63-1 OS=Drosophila melanogaster GN=Eip63F-1 PE=1 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 1.185e-12
Identity = 33/71 (46.48%), Postives = 52/71 (73.24%), Query Frame = -1
Query:  398 DEDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMM 610
            DE  D  E+L  AFRVFD+D NGFI+  EL+  M  +GE L ++++++++  AD+D DG+INYEEF ++++
Sbjct:  123 DEADDVTEDLIAAFRVFDRDGNGFITRDELQTAMEMIGEPLNEQQLEQLLVIADLDQDGRINYEEFTRLLL 193          
BLAST of CB304523 vs. ExPASy Swiss-Prot
Match: CML9_ARATH (Calmodulin-like protein 9 OS=Arabidopsis thaliana GN=CML9 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.185e-12
Identity = 34/67 (50.75%), Postives = 49/67 (73.13%), Query Frame = -1
Query:  395 SEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMA 595
            + +EL E FRVFD+D +G IS  EL   M ++G K+T EE + M+READ+DGDG +++ EF K+M+A
Sbjct:   82 ASDELIEVFRVFDRDGDGLISQLELGEGMKDMGMKITAEEAEHMVREADLDGDGFLSFHEFSKMMIA 148          
BLAST of CB304523 vs. ExPASy Swiss-Prot
Match: CALML_DICDI (Calmodulin-like protein OS=Dictyostelium discoideum GN=calB PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.185e-12
Identity = 33/67 (49.25%), Postives = 52/67 (77.61%), Query Frame = -1
Query:  401 TDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 601
            +DSE ++K+AF+VFDK  NG+ +  +L+H +T++GEKLT EE D M+++A    DGQI+ +EFV+V+
Sbjct:   77 SDSEADIKQAFKVFDKKGNGYANIQDLKHTLTSIGEKLTKEEFDNMLKDAKT-VDGQIHVDEFVRVI 142          
BLAST of CB304523 vs. ExPASy Swiss-Prot
Match: MYL9_PONAB (Myosin regulatory light polypeptide 9 OS=Pongo abelii GN=MYL9 PE=2 SV=3)

HSP 1 Score: 72.7886 bits (177), Expect = 1.548e-12
Identity = 31/67 (46.27%), Postives = 46/67 (68.66%), Query Frame = -1
Query:  401 TDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 601
            TD E+ ++ AF  FD++ +GFI    LR ++T +G++ TDEEVDEM REA +D  G  NY EF +++
Sbjct:   97 TDPEDVIRNAFACFDEEASGFIHEDHLRELLTTMGDRFTDEEVDEMYREAPIDKKGNFNYVEFTRIL 163          
BLAST of CB304523 vs. ExPASy Swiss-Prot
Match: MYL9_PIG (Myosin regulatory light polypeptide 9 OS=Sus scrofa GN=MYL9 PE=1 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 1.548e-12
Identity = 31/67 (46.27%), Postives = 46/67 (68.66%), Query Frame = -1
Query:  401 TDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 601
            TD E+ ++ AF  FD++ +GFI    LR ++T +G++ TDEEVDEM REA +D  G  NY EF +++
Sbjct:   97 TDPEDVIRNAFACFDEEASGFIHEDHLRELLTTMGDRFTDEEVDEMYREAPIDKKGNFNYVEFTRIL 163          
The following BLAST results are available for this feature:
BLAST of CB304523 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 272
Match NameE-valueIdentityDescription
TNNC2_RABIT9.074e-1343.66Troponin C, skeletal muscle OS=Oryctolagus cunicul... [more]
TNNC2_PIG9.074e-1343.66Troponin C, skeletal muscle OS=Sus scrofa GN=TNNC2... [more]
MYL3_BOVIN9.074e-1349.32Myosin light chain 3 OS=Bos taurus GN=MYL3 PE=1 SV... [more]
CML19_ARATH9.074e-1347.06Calcium-binding protein CML19 OS=Arabidopsis thali... [more]
CML13_ORYSJ9.074e-1344.12Probable calcium-binding protein CML13 OS=Oryza sa... [more]
E631_DROME1.185e-1246.48Calcium-binding protein E63-1 OS=Drosophila melano... [more]
CML9_ARATH1.185e-1250.75Calmodulin-like protein 9 OS=Arabidopsis thaliana ... [more]
CALML_DICDI1.185e-1249.25Calmodulin-like protein OS=Dictyostelium discoideu... [more]
MYL9_PONAB1.548e-1246.27Myosin regulatory light polypeptide 9 OS=Pongo abe... [more]
MYL9_PIG1.548e-1246.27Myosin regulatory light polypeptide 9 OS=Sus scrof... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0001_IVaR_A12 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IVaR_A12 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304523 ID=CB304523; Name=CB304523; organism=Citrus sinensis; type=EST; length=613bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATAGGCCAAGAAACCTAAGC
TGATAGTCTGATACATAAAATAGGATACATATTTCGACCAAAAGAAAAAT
AAACATCGCAAGGGCAGAAATTAATGAAACACATTAAACAGACAACAACA
TTCATAGAACAGCAGAACAACTAAAATAATAAAAACCGAAAAGTTTTTCG
AGTCACAAGACATATTGACGAGGGAGACAACATTCTTCCTACACCATCAG
GCCCATCACCATTAAAAGACCATTGCTTCCTTTAGCCTGACCCTCATGAC
TATCAAATTAAAAATTGTAAAAGAGAAAACTAGGAATCCCTTTATAATTT
AGTCAACCCATTTTATAAGTATTGGTGGGTTGGGGTCATTACTTGGCCAT
CATAACCTTGACAAATTCCTCATAATTTATCTGGCCATCACCATCAACAT
CAGCTTCCCTTATCATCTCATCAACTTCTTCATCAGTAAGTTTCTCTCCT
AGGTTTGTCATCACATGGCGCAACTCAGCAGCTGAGATGAAACCATTCTG
ATCCTTGTCGAAAACCCGGAAGGCCTCTTTCAGCTCCTCCTCAGAGTCGG
TATCCTCATCTTC
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