CB304523

Overview
NameCB304523
Unique NameCB304523
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length613
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB304523 vs. ExPASy Swiss-Prot
Match: MYL9_MOUSE (Myosin regulatory light polypeptide 9 OS=Mus musculus GN=Myl9 PE=1 SV=3)

HSP 1 Score: 72.7886 bits (177), Expect = 1.548e-12
Identity = 31/67 (46.27%), Postives = 46/67 (68.66%), Query Frame = -1
Query:  401 TDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 601
            TD E+ ++ AF  FD++ +GFI    LR ++T +G++ TDEEVDEM REA +D  G  NY EF +++
Sbjct:   97 TDPEDVIRNAFACFDEEASGFIHEDHLRELLTTMGDRFTDEEVDEMYREAPIDKKGNFNYVEFTRIL 163          
BLAST of CB304523 vs. ExPASy Swiss-Prot
Match: MYL9_HUMAN (Myosin regulatory light polypeptide 9 OS=Homo sapiens GN=MYL9 PE=1 SV=4)

HSP 1 Score: 72.7886 bits (177), Expect = 1.548e-12
Identity = 31/67 (46.27%), Postives = 46/67 (68.66%), Query Frame = -1
Query:  401 TDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 601
            TD E+ ++ AF  FD++ +GFI    LR ++T +G++ TDEEVDEM REA +D  G  NY EF +++
Sbjct:   97 TDPEDVIRNAFACFDEEASGFIHEDHLRELLTTMGDRFTDEEVDEMYREAPIDKKGNFNYVEFTRIL 163          
BLAST of CB304523 vs. ExPASy Swiss-Prot
Match: MLRM_CHICK (Myosin regulatory light chain 2, smooth muscle major isoform OS=Gallus gallus PE=1 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 1.548e-12
Identity = 31/67 (46.27%), Postives = 46/67 (68.66%), Query Frame = -1
Query:  401 TDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 601
            TD E+ ++ AF  FD++ +GFI    LR ++T +G++ TDEEVDEM REA +D  G  NY EF +++
Sbjct:   97 TDPEDVIRNAFACFDEEASGFIHEDHLRELLTTMGDRFTDEEVDEMYREAPIDKKGNFNYVEFTRIL 163          
BLAST of CB304523 vs. ExPASy Swiss-Prot
Match: CML7_ARATH (Calmodulin-like protein 7 OS=Arabidopsis thaliana GN=CML7 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.548e-12
Identity = 34/72 (47.22%), Postives = 56/72 (77.78%), Query Frame = -1
Query:  401 DEDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEK--LTDEEVDEMIREADVDGDGQINYEEFVKVM 610
            DE+ + EE++KEAF VFD++ +GFI+  EL+ V+++LG K   T ++  +MI++ DVDGDG++NY+EF ++M
Sbjct:   71 DEEDEEEEDMKEAFNVFDQNGDGFITVDELKAVLSSLGLKQGKTLDDCKKMIKKVDVDGDGRVNYKEFRQMM 142          
BLAST of CB304523 vs. ExPASy Swiss-Prot
Match: CML15_ARATH (Probable calcium-binding protein CML15 OS=Arabidopsis thaliana GN=CML15 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.548e-12
Identity = 34/65 (52.31%), Postives = 47/65 (72.31%), Query Frame = -1
Query:  401 SEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 595
            + E+L E F+ FD+D NGFISAAEL   M  +G+ LT +E+ EMI+EAD +GDG I++ EF  +M
Sbjct:   79 NSEQLLEIFKSFDRDGNGFISAAELAGAMAKMGQPLTYKELTEMIKEADTNGDGVISFGEFASIM 143          
BLAST of CB304523 vs. ExPASy Swiss-Prot
Match: CETN3_MOUSE (Centrin-3 OS=Mus musculus GN=Cetn3 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.548e-12
Identity = 34/68 (50.00%), Postives = 46/68 (67.65%), Query Frame = -1
Query:  401 DTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 604
            + D  EE+ +AF++FD D +G IS   LR V   LGE ++DEE+  MI E D DGDG+IN EEF+ +M
Sbjct:   96 ERDPHEEILKAFKLFDDDDSGKISLRNLRRVARELGENMSDEELRAMIEEFDKDGDGEINQEEFIAIM 163          
BLAST of CB304523 vs. ExPASy Swiss-Prot
Match: CETN3_HUMAN (Centrin-3 OS=Homo sapiens GN=CETN3 PE=2 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 1.548e-12
Identity = 34/68 (50.00%), Postives = 46/68 (67.65%), Query Frame = -1
Query:  401 DTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 604
            + D  EE+ +AF++FD D +G IS   LR V   LGE ++DEE+  MI E D DGDG+IN EEF+ +M
Sbjct:   96 ERDPHEEILKAFKLFDDDDSGKISLRNLRRVARELGENMSDEELRAMIEEFDKDGDGEINQEEFIAIM 163          
BLAST of CB304523 vs. ExPASy Swiss-Prot
Match: TNNC2_MELGA (Troponin C, skeletal muscle OS=Meleagris gallopavo GN=TNNC2 PE=1 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 2.021e-12
Identity = 30/71 (42.25%), Postives = 52/71 (73.24%), Query Frame = -1
Query:  401 EDEDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 613
            ED    SEEEL   FR+FDK+ +GFI   EL  ++   GE +T+EE++++++++D + DG+I+++EF+K+M
Sbjct:   88 EDAKGKSEEELANCFRIFDKNADGFIDIEELGEILRATGEHVTEEEIEDLMKDSDKNNDGRIDFDEFLKMM 158          
BLAST of CB304523 vs. ExPASy Swiss-Prot
Match: MYL3_RAT (Myosin light chain 3 OS=Rattus norvegicus GN=Myl3 PE=1 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 2.021e-12
Identity = 35/73 (47.95%), Postives = 53/73 (72.60%), Query Frame = -1
Query:  395 EDEDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMA 613
            +++DT + E+  E  RVFDK+ NG +  AELRHV+  LGE+LT++EV++++   + D +G INYE FVK +MA
Sbjct:  128 KNKDTGTYEDFVEGLRVFDKEGNGTVMGAELRHVLATLGERLTEDEVEKLMAGQE-DSNGCINYEAFVKHIMA 199          
BLAST of CB304523 vs. ExPASy Swiss-Prot
Match: MYL3_MOUSE (Myosin light chain 3 OS=Mus musculus GN=Myl3 PE=2 SV=4)

HSP 1 Score: 72.4034 bits (176), Expect = 2.021e-12
Identity = 35/73 (47.95%), Postives = 53/73 (72.60%), Query Frame = -1
Query:  395 EDEDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMA 613
            +++DT + E+  E  RVFDK+ NG +  AELRHV+  LGE+LT++EV++++   + D +G INYE FVK +MA
Sbjct:  132 KNKDTGTYEDFVEGLRVFDKEGNGTVMGAELRHVLATLGERLTEDEVEKLMAGQE-DSNGCINYEAFVKHIMA 203          
The following BLAST results are available for this feature:
BLAST of CB304523 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 272
Match NameE-valueIdentityDescription
MYL9_MOUSE1.548e-1246.27Myosin regulatory light polypeptide 9 OS=Mus muscu... [more]
MYL9_HUMAN1.548e-1246.27Myosin regulatory light polypeptide 9 OS=Homo sapi... [more]
MLRM_CHICK1.548e-1246.27Myosin regulatory light chain 2, smooth muscle maj... [more]
CML7_ARATH1.548e-1247.22Calmodulin-like protein 7 OS=Arabidopsis thaliana ... [more]
CML15_ARATH1.548e-1252.31Probable calcium-binding protein CML15 OS=Arabidop... [more]
CETN3_MOUSE1.548e-1250.00Centrin-3 OS=Mus musculus GN=Cetn3 PE=2 SV=1[more]
CETN3_HUMAN1.548e-1250.00Centrin-3 OS=Homo sapiens GN=CETN3 PE=2 SV=2[more]
TNNC2_MELGA2.021e-1242.25Troponin C, skeletal muscle OS=Meleagris gallopavo... [more]
MYL3_RAT2.021e-1247.95Myosin light chain 3 OS=Rattus norvegicus GN=Myl3 ... [more]
MYL3_MOUSE2.021e-1247.95Myosin light chain 3 OS=Mus musculus GN=Myl3 PE=2 ... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0001_IVaR_A12 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IVaR_A12 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304523 ID=CB304523; Name=CB304523; organism=Citrus sinensis; type=EST; length=613bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATAGGCCAAGAAACCTAAGC
TGATAGTCTGATACATAAAATAGGATACATATTTCGACCAAAAGAAAAAT
AAACATCGCAAGGGCAGAAATTAATGAAACACATTAAACAGACAACAACA
TTCATAGAACAGCAGAACAACTAAAATAATAAAAACCGAAAAGTTTTTCG
AGTCACAAGACATATTGACGAGGGAGACAACATTCTTCCTACACCATCAG
GCCCATCACCATTAAAAGACCATTGCTTCCTTTAGCCTGACCCTCATGAC
TATCAAATTAAAAATTGTAAAAGAGAAAACTAGGAATCCCTTTATAATTT
AGTCAACCCATTTTATAAGTATTGGTGGGTTGGGGTCATTACTTGGCCAT
CATAACCTTGACAAATTCCTCATAATTTATCTGGCCATCACCATCAACAT
CAGCTTCCCTTATCATCTCATCAACTTCTTCATCAGTAAGTTTCTCTCCT
AGGTTTGTCATCACATGGCGCAACTCAGCAGCTGAGATGAAACCATTCTG
ATCCTTGTCGAAAACCCGGAAGGCCTCTTTCAGCTCCTCCTCAGAGTCGG
TATCCTCATCTTC
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