CB304523

Overview
NameCB304523
Unique NameCB304523
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length613
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2673 contig Csv1_Contig2673:843..1455. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304523 vs. ExPASy Swiss-Prot
Match: MLE3_CHICK (Myosin light chain 3, skeletal muscle isoform OS=Gallus gallus PE=1 SV=3)

HSP 1 Score: 72.4034 bits (176), Expect = 2.021e-12
Identity = 35/72 (48.61%), Postives = 52/72 (72.22%), Query Frame = -1
Query:  395 DEDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMA 610
            ++D  + E+  E  RVFDK+ NG +  AELRHV+  LGEK+T+EEV+E+++  + D +G INYE FVK +M+
Sbjct:   79 NKDQGTFEDFVEGLRVFDKEGNGTVMGAELRHVLATLGEKMTEEEVEELMKGQE-DSNGCINYEAFVKHIMS 149          
BLAST of CB304523 vs. ExPASy Swiss-Prot
Match: MLE1_CHICK (Myosin light chain 1, skeletal muscle isoform OS=Gallus gallus PE=1 SV=3)

HSP 1 Score: 72.4034 bits (176), Expect = 2.021e-12
Identity = 35/72 (48.61%), Postives = 52/72 (72.22%), Query Frame = -1
Query:  395 DEDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMA 610
            ++D  + E+  E  RVFDK+ NG +  AELRHV+  LGEK+T+EEV+E+++  + D +G INYE FVK +M+
Sbjct:  121 NKDQGTFEDFVEGLRVFDKEGNGTVMGAELRHVLATLGEKMTEEEVEELMKGQE-DSNGCINYEAFVKHIMS 191          
BLAST of CB304523 vs. ExPASy Swiss-Prot
Match: TNNC2_MOUSE (Troponin C, skeletal muscle OS=Mus musculus GN=Tnnc2 PE=1 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 2.640e-12
Identity = 30/71 (42.25%), Postives = 51/71 (71.83%), Query Frame = -1
Query:  401 EDEDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 613
            ED    SEEEL E FR+FD++ +G+I A EL  +    GE +T+EE++ ++++ D + DG+I+++EF+K+M
Sbjct:   86 EDAKGKSEEELAECFRIFDRNADGYIDAEELAEIFRASGEHVTEEEIESLMKDGDKNNDGRIDFDEFLKMM 156          
BLAST of CB304523 vs. ExPASy Swiss-Prot
Match: TNNC1_DROME (Troponin C, isoform 1 OS=Drosophila melanogaster GN=TpnC41C PE=1 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 2.640e-12
Identity = 32/71 (45.07%), Postives = 53/71 (74.65%), Query Frame = -1
Query:  401 DEDTDSE-EELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 610
            +ED ++   ELKEAFR++DK+ NG+I+   LR ++  L +KLT++++D MI E D DG G ++++EF++VM
Sbjct:   79 EEDAEAMMAELKEAFRLYDKEGNGYITTGVLREILRELDDKLTNDDLDMMIEEIDSDGSGTVDFDEFMEVM 149          
BLAST of CB304523 vs. ExPASy Swiss-Prot
Match: CML10_ORYSJ (Probable calcium-binding protein CML10 OS=Oryza sativa subsp. japonica GN=CML10 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.640e-12
Identity = 39/66 (59.09%), Postives = 47/66 (71.21%), Query Frame = -1
Query:  395 EEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMA 592
            EE+L+ AFRVFD D NG ISAAEL  V+  LGEK T ++   MI   D +GDG I++EEF KVMMA
Sbjct:  112 EEDLRHAFRVFDADGNGTISAAELARVLHGLGEKATVQQCRRMIEGVDQNGDGLISFEEF-KVMMA 176          
BLAST of CB304523 vs. ExPASy Swiss-Prot
Match: CDPKT_ARATH (Calcium-dependent protein kinase 29 OS=Arabidopsis thaliana GN=CPK29 PE=2 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 2.640e-12
Identity = 35/66 (53.03%), Postives = 46/66 (69.70%), Query Frame = -1
Query:  401 DSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 598
            + EE L EAF+ FDKD++GFI+  EL+H MT  G    D  +DE+I + D D DG+INYEEFV +M
Sbjct:  457 EKEENLIEAFKYFDKDRSGFITRDELKHSMTEYGMG-DDATIDEVINDVDTDNDGRINYEEFVAMM 521          
BLAST of CB304523 vs. ExPASy Swiss-Prot
Match: CATR_CHLRE (Caltractin OS=Chlamydomonas reinhardtii PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.640e-12
Identity = 33/68 (48.53%), Postives = 49/68 (72.06%), Query Frame = -1
Query:  401 DTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 604
            + DS EE+ +AFR+FD D +G I+  +LR V   LGE LT+EE+ EMI EAD + D +I+ +EF+++M
Sbjct:   96 ERDSREEILKAFRLFDDDNSGTITIKDLRRVAKELGENLTEEELQEMIAEADRNDDNEIDEDEFIRIM 163          
BLAST of CB304523 vs. ExPASy Swiss-Prot
Match: TNNC2_HUMAN (Troponin C, skeletal muscle OS=Homo sapiens GN=TNNC2 PE=1 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 3.448e-12
Identity = 30/71 (42.25%), Postives = 50/71 (70.42%), Query Frame = -1
Query:  401 EDEDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 613
            ED    SEEEL E FR+FD++ +G+I   EL  +    GE +TDEE++ ++++ D + DG+I+++EF+K+M
Sbjct:   86 EDAKGKSEEELAECFRIFDRNADGYIDPEELAEIFRASGEHVTDEEIESLMKDGDKNNDGRIDFDEFLKMM 156          
BLAST of CB304523 vs. ExPASy Swiss-Prot
Match: MLC1_YEAST (Myosin light chain 1 OS=Saccharomyces cerevisiae GN=MLC1 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.448e-12
Identity = 29/61 (47.54%), Postives = 49/61 (80.33%), Query Frame = -1
Query:  407 EELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVK 589
            E+  +AF+VFDK+  G +S  +LR+++T LGEKLTD EVDE+++  +VD +G+I+Y++F++
Sbjct:   84 EDFVKAFQVFDKESTGKVSVGDLRYMLTGLGEKLTDAEVDELLKGVEVDSNGEIDYKKFIE 144          
BLAST of CB304523 vs. ExPASy Swiss-Prot
Match: CML3_ARATH (Calmodulin-like protein 3 OS=Arabidopsis thaliana GN=CML3 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.448e-12
Identity = 34/71 (47.89%), Postives = 52/71 (73.24%), Query Frame = -1
Query:  401 EDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEK--LTDEEVDEMIREADVDGDGQINYEEFVKVM 607
            E+ D EE+++EAF VFD++++GFI+  ELR V+ +LG K   T E+   MI + DVDGDG +N++EF ++M
Sbjct:   71 EERDEEEDMREAFNVFDQNRDGFITVEELRSVLASLGLKQGRTLEDCKRMISKVDVDGDGMVNFKEFKQMM 141          
The following BLAST results are available for this feature:
BLAST of CB304523 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 272
Match NameE-valueIdentityDescription
MLE3_CHICK2.021e-1248.61Myosin light chain 3, skeletal muscle isoform OS=G... [more]
MLE1_CHICK2.021e-1248.61Myosin light chain 1, skeletal muscle isoform OS=G... [more]
TNNC2_MOUSE2.640e-1242.25Troponin C, skeletal muscle OS=Mus musculus GN=Tnn... [more]
TNNC1_DROME2.640e-1245.07Troponin C, isoform 1 OS=Drosophila melanogaster G... [more]
CML10_ORYSJ2.640e-1259.09Probable calcium-binding protein CML10 OS=Oryza sa... [more]
CDPKT_ARATH2.640e-1253.03Calcium-dependent protein kinase 29 OS=Arabidopsis... [more]
CATR_CHLRE2.640e-1248.53Caltractin OS=Chlamydomonas reinhardtii PE=1 SV=1[more]
TNNC2_HUMAN3.448e-1242.25Troponin C, skeletal muscle OS=Homo sapiens GN=TNN... [more]
MLC1_YEAST3.448e-1247.54Myosin light chain 1 OS=Saccharomyces cerevisiae G... [more]
CML3_ARATH3.448e-1247.89Calmodulin-like protein 3 OS=Arabidopsis thaliana ... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0001_IVaR_A12 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IVaR_A12 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304523 ID=CB304523; Name=CB304523; organism=Citrus sinensis; type=EST; length=613bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATAGGCCAAGAAACCTAAGC
TGATAGTCTGATACATAAAATAGGATACATATTTCGACCAAAAGAAAAAT
AAACATCGCAAGGGCAGAAATTAATGAAACACATTAAACAGACAACAACA
TTCATAGAACAGCAGAACAACTAAAATAATAAAAACCGAAAAGTTTTTCG
AGTCACAAGACATATTGACGAGGGAGACAACATTCTTCCTACACCATCAG
GCCCATCACCATTAAAAGACCATTGCTTCCTTTAGCCTGACCCTCATGAC
TATCAAATTAAAAATTGTAAAAGAGAAAACTAGGAATCCCTTTATAATTT
AGTCAACCCATTTTATAAGTATTGGTGGGTTGGGGTCATTACTTGGCCAT
CATAACCTTGACAAATTCCTCATAATTTATCTGGCCATCACCATCAACAT
CAGCTTCCCTTATCATCTCATCAACTTCTTCATCAGTAAGTTTCTCTCCT
AGGTTTGTCATCACATGGCGCAACTCAGCAGCTGAGATGAAACCATTCTG
ATCCTTGTCGAAAACCCGGAAGGCCTCTTTCAGCTCCTCCTCAGAGTCGG
TATCCTCATCTTC
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