CB304523

Overview
NameCB304523
Unique NameCB304523
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length613
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2673 contig Csv1_Contig2673:843..1455. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304523 vs. ExPASy Swiss-Prot
Match: TNNC2_DROME (Troponin C, isoform 2 OS=Drosophila melanogaster GN=TpnC47D PE=1 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 4.503e-12
Identity = 29/71 (40.85%), Postives = 53/71 (74.65%), Query Frame = -1
Query:  401 EDEDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 613
            E++D   ++EL+EAFR++DK  NG+I  + L+ ++  L ++LT++E+D MI E D DG G ++++EF+++M
Sbjct:   82 EEDDEAMQKELREAFRLYDKQGNGYIPTSCLKEILKELDDQLTEQELDIMIEEIDSDGSGTVDFDEFMEMM 152          
BLAST of CB304523 vs. ExPASy Swiss-Prot
Match: TNNC2_CHICK (Troponin C, skeletal muscle OS=Gallus gallus GN=TNNC2 PE=1 SV=3)

HSP 1 Score: 71.2478 bits (173), Expect = 4.503e-12
Identity = 29/71 (40.85%), Postives = 52/71 (73.24%), Query Frame = -1
Query:  401 EDEDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 613
            ED    SEEEL   FR+FDK+ +GFI   EL  ++   GE +T+E+++++++++D + DG+I+++EF+K+M
Sbjct:   89 EDAKGKSEEELANCFRIFDKNADGFIDIEELGEILRATGEHVTEEDIEDLMKDSDKNNDGRIDFDEFLKMM 159          
BLAST of CB304523 vs. ExPASy Swiss-Prot
Match: TNNC2_ANGAN (Troponin C, skeletal muscle OS=Anguilla anguilla PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.503e-12
Identity = 31/71 (43.66%), Postives = 52/71 (73.24%), Query Frame = -1
Query:  401 EDEDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 613
            ED+   SEEEL E FRVFDK+ +GFI   E   ++ + GE +++EE+DE++ + D + DG+I+++E++K+M
Sbjct:   86 EDQAGKSEEELAEFFRVFDKNGDGFIDREEFGEILRSSGEPVSEEEIDELMADGDKNNDGKIDFDEWLKMM 156          
BLAST of CB304523 vs. ExPASy Swiss-Prot
Match: MYL3_PONAB (Myosin light chain 3 OS=Pongo abelii GN=MYL3 PE=2 SV=3)

HSP 1 Score: 71.2478 bits (173), Expect = 4.503e-12
Identity = 34/73 (46.58%), Postives = 53/73 (72.60%), Query Frame = -1
Query:  395 EDEDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMA 613
            +++DT + E+  E  RVFDK+ NG +  AELRHV+  LGE+LT++EV++++   + D +G INYE FVK +M+
Sbjct:  123 KNKDTGTYEDFVEGLRVFDKEGNGTVMGAELRHVLATLGERLTEDEVEKLMAGQE-DSNGCINYEAFVKHIMS 194          
BLAST of CB304523 vs. ExPASy Swiss-Prot
Match: MYL3_HUMAN (Myosin light chain 3 OS=Homo sapiens GN=MYL3 PE=1 SV=3)

HSP 1 Score: 71.2478 bits (173), Expect = 4.503e-12
Identity = 34/73 (46.58%), Postives = 53/73 (72.60%), Query Frame = -1
Query:  395 EDEDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMA 613
            +++DT + E+  E  RVFDK+ NG +  AELRHV+  LGE+LT++EV++++   + D +G INYE FVK +M+
Sbjct:  123 KNKDTGTYEDFVEGLRVFDKEGNGTVMGAELRHVLATLGERLTEDEVEKLMAGQE-DSNGCINYEAFVKHIMS 194          
BLAST of CB304523 vs. ExPASy Swiss-Prot
Match: CML24_ARATH (Calcium-binding protein CML24 OS=Arabidopsis thaliana GN=CML24 PE=2 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 4.503e-12
Identity = 33/62 (53.23%), Postives = 46/62 (74.19%), Query Frame = -1
Query:  401 ELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 586
            +LKEAF ++D D NG ISA EL  VM NLGEK + ++  +MI + D+DGDG +N++EF K+M
Sbjct:   94 DLKEAFELYDLDGNGRISAKELHSVMKNLGEKCSVQDCKKMISKVDIDGDGCVNFDEFKKMM 155          
BLAST of CB304523 vs. ExPASy Swiss-Prot
Match: CML23_ARATH (Probable calcium-binding protein CML23 OS=Arabidopsis thaliana GN=CML23 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.503e-12
Identity = 34/72 (47.22%), Postives = 49/72 (68.06%), Query Frame = -1
Query:  398 EDEDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMM 613
            +  +  +  +LKEAF ++D D+NG ISA EL  VM NLGEK + ++   MI + D DGDG +++EEF K+MM
Sbjct:   81 QSSNNSAIRDLKEAFDLYDLDRNGRISANELHSVMKNLGEKCSIQDCQRMINKVDSDGDGCVDFEEFKKMMM 152          
BLAST of CB304523 vs. ExPASy Swiss-Prot
Match: CALL6_HUMAN (Calmodulin-like protein 6 OS=Homo sapiens GN=CALML6 PE=2 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 4.503e-12
Identity = 33/66 (50.00%), Postives = 47/66 (71.21%), Query Frame = -1
Query:  401 DSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 598
            + E EL+ AFRVFDK+  G+I    L++V+ N GE L + E ++M++EAD DGD  I+YEEFV +M
Sbjct:  107 NQESELRAAFRVFDKEGKGYIDWNTLKYVLMNAGEPLNEVEAEQMMKEADKDGDRTIDYEEFVAMM 172          
BLAST of CB304523 vs. ExPASy Swiss-Prot
Match: MLE_HALRO (Myosin catalytic light chain, smooth muscle OS=Halocynthia roretzi PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 5.881e-12
Identity = 33/66 (50.00%), Postives = 47/66 (71.21%), Query Frame = -1
Query:  398 SEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMM 595
            S E+  E  RVFDK+ NG I  AELRHV++ LGEK+++EEV+E + +   D +G I+YEEF K ++
Sbjct:   84 SYEDFVEGLRVFDKENNGKIMGAELRHVLSTLGEKMSEEEVEESLLQGQQDPNGCIHYEEFSKYLL 149          
BLAST of CB304523 vs. ExPASy Swiss-Prot
Match: CML20_ARATH (Probable calcium-binding protein CML20 OS=Arabidopsis thaliana GN=CML20 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 5.881e-12
Identity = 30/68 (44.12%), Postives = 50/68 (73.53%), Query Frame = -1
Query:  401 DTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 604
            + D++EEL +AF++ D D+NG IS  +++ +  +LGE  TD E+ EM+ EAD D DG++N +EF+++M
Sbjct:   94 ERDTKEELTKAFQIIDLDKNGKISPDDIKRMAKDLGENFTDAEIREMVEEADRDRDGEVNMDEFMRMM 161          

HSP 2 Score: 69.707 bits (169), Expect = 1.310e-11
Identity = 32/70 (45.71%), Postives = 49/70 (70.00%), Query Frame = -1
Query:  392 TDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 601
            T  ++E+KEAF +FD D +G I A EL   M  LG ++T+E++++MI + D DG G I+++EFV +M AK
Sbjct:   22 TQKKQEIKEAFELFDTDGSGTIDAKELNVAMRALGFEMTEEQINKMIADVDKDGSGAIDFDEFVHMMTAK 91          
The following BLAST results are available for this feature:
BLAST of CB304523 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 272
Match NameE-valueIdentityDescription
TNNC2_DROME4.503e-1240.85Troponin C, isoform 2 OS=Drosophila melanogaster G... [more]
TNNC2_CHICK4.503e-1240.85Troponin C, skeletal muscle OS=Gallus gallus GN=TN... [more]
TNNC2_ANGAN4.503e-1243.66Troponin C, skeletal muscle OS=Anguilla anguilla P... [more]
MYL3_PONAB4.503e-1246.58Myosin light chain 3 OS=Pongo abelii GN=MYL3 PE=2 ... [more]
MYL3_HUMAN4.503e-1246.58Myosin light chain 3 OS=Homo sapiens GN=MYL3 PE=1 ... [more]
CML24_ARATH4.503e-1253.23Calcium-binding protein CML24 OS=Arabidopsis thali... [more]
CML23_ARATH4.503e-1247.22Probable calcium-binding protein CML23 OS=Arabidop... [more]
CALL6_HUMAN4.503e-1250.00Calmodulin-like protein 6 OS=Homo sapiens GN=CALML... [more]
MLE_HALRO5.881e-1250.00Myosin catalytic light chain, smooth muscle OS=Hal... [more]
CML20_ARATH5.881e-1244.12Probable calcium-binding protein CML20 OS=Arabidop... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0001_IVaR_A12 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IVaR_A12 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304523 ID=CB304523; Name=CB304523; organism=Citrus sinensis; type=EST; length=613bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATAGGCCAAGAAACCTAAGC
TGATAGTCTGATACATAAAATAGGATACATATTTCGACCAAAAGAAAAAT
AAACATCGCAAGGGCAGAAATTAATGAAACACATTAAACAGACAACAACA
TTCATAGAACAGCAGAACAACTAAAATAATAAAAACCGAAAAGTTTTTCG
AGTCACAAGACATATTGACGAGGGAGACAACATTCTTCCTACACCATCAG
GCCCATCACCATTAAAAGACCATTGCTTCCTTTAGCCTGACCCTCATGAC
TATCAAATTAAAAATTGTAAAAGAGAAAACTAGGAATCCCTTTATAATTT
AGTCAACCCATTTTATAAGTATTGGTGGGTTGGGGTCATTACTTGGCCAT
CATAACCTTGACAAATTCCTCATAATTTATCTGGCCATCACCATCAACAT
CAGCTTCCCTTATCATCTCATCAACTTCTTCATCAGTAAGTTTCTCTCCT
AGGTTTGTCATCACATGGCGCAACTCAGCAGCTGAGATGAAACCATTCTG
ATCCTTGTCGAAAACCCGGAAGGCCTCTTTCAGCTCCTCCTCAGAGTCGG
TATCCTCATCTTC
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