CB304523

Overview
NameCB304523
Unique NameCB304523
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length613
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2673 contig Csv1_Contig2673:843..1455. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304523 vs. ExPASy Swiss-Prot
Match: CATR_ATRNU (Caltractin OS=Atriplex nummularia PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 5.881e-12
Identity = 30/68 (44.12%), Postives = 49/68 (72.06%), Query Frame = -1
Query:  401 DTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 604
            + D++EEL +AFR+ D+D NG IS  +++ +   LGE  T +++ +MI EAD D DG++N EEF+++M
Sbjct:   93 ERDTKEELMKAFRIIDQDNNGKISPEDIQRIAKELGENFTVKDIQDMIEEADRDRDGEVNVEEFLRMM 160          
BLAST of CB304523 vs. ExPASy Swiss-Prot
Match: CABP7_RAT (Calcium-binding protein 7 OS=Rattus norvegicus GN=Cabp7 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 5.881e-12
Identity = 34/73 (46.58%), Postives = 50/73 (68.49%), Query Frame = -1
Query:  392 DEDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 610
            D   D  EE++EAF+VFD+D NGFIS  EL   M +LG    + E++ +I+  D+DGDGQ+++EEFV ++  K
Sbjct:   29 DIPEDELEEIREAFKVFDRDGNGFISKQELGTAMRSLGYMPNEVELEVIIQRLDMDGDGQVDFEEFVTLLGPK 101          
BLAST of CB304523 vs. ExPASy Swiss-Prot
Match: CABP7_PAPAN (Calcium-binding protein 7 OS=Papio anubis GN=CABP7 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 5.881e-12
Identity = 34/73 (46.58%), Postives = 50/73 (68.49%), Query Frame = -1
Query:  392 DEDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 610
            D   D  EE++EAF+VFD+D NGFIS  EL   M +LG    + E++ +I+  D+DGDGQ+++EEFV ++  K
Sbjct:   29 DIPEDELEEIREAFKVFDRDGNGFISKQELGTAMRSLGYMPNEVELEVIIQRLDMDGDGQVDFEEFVTLLGPK 101          
BLAST of CB304523 vs. ExPASy Swiss-Prot
Match: CABP7_MOUSE (Calcium-binding protein 7 OS=Mus musculus GN=Cabp7 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 5.881e-12
Identity = 34/73 (46.58%), Postives = 50/73 (68.49%), Query Frame = -1
Query:  392 DEDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 610
            D   D  EE++EAF+VFD+D NGFIS  EL   M +LG    + E++ +I+  D+DGDGQ+++EEFV ++  K
Sbjct:   29 DIPEDELEEIREAFKVFDRDGNGFISKQELGTAMRSLGYMPNEVELEVIIQRLDMDGDGQVDFEEFVTLLGPK 101          
BLAST of CB304523 vs. ExPASy Swiss-Prot
Match: CABP7_HUMAN (Calcium-binding protein 7 OS=Homo sapiens GN=CABP7 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 5.881e-12
Identity = 34/73 (46.58%), Postives = 50/73 (68.49%), Query Frame = -1
Query:  392 DEDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 610
            D   D  EE++EAF+VFD+D NGFIS  EL   M +LG    + E++ +I+  D+DGDGQ+++EEFV ++  K
Sbjct:   29 DIPEDELEEIREAFKVFDRDGNGFISKQELGTAMRSLGYMPNEVELEVIIQRLDMDGDGQVDFEEFVTLLGPK 101          
BLAST of CB304523 vs. ExPASy Swiss-Prot
Match: MLRN_CHICK (Myosin regulatory light chain 2, smooth muscle minor isoform OS=Gallus gallus PE=2 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 7.681e-12
Identity = 30/67 (44.78%), Postives = 45/67 (67.16%), Query Frame = -1
Query:  401 TDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 601
            TD E+ ++ AF  FD++  GFI    LR ++T +G++ TDEEVDE+ REA +D  G  NY EF +++
Sbjct:   97 TDPEDVIRNAFACFDEEATGFIQEDYLRELLTTMGDRFTDEEVDELYREAPIDKKGNFNYIEFTRIL 163          
BLAST of CB304523 vs. ExPASy Swiss-Prot
Match: MLR4_SCHPO (Myosin regulatory light chain cdc4 OS=Schizosaccharomyces pombe GN=cdc4 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 7.681e-12
Identity = 32/65 (49.23%), Postives = 49/65 (75.38%), Query Frame = -1
Query:  395 EELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMA 589
            EE  + F+VFDKD  G I   ELR+V+T+LGEKL++EE+DE+++   V  DG +NY +FV++++A
Sbjct:   77 EEFVKGFQVFDKDATGMIGVGELRYVLTSLGEKLSNEEMDELLKGVPVK-DGMVNYHDFVQMILA 140          
BLAST of CB304523 vs. ExPASy Swiss-Prot
Match: CML9_ORYSJ (Probable calcium-binding protein CML9 OS=Oryza sativa subsp. japonica GN=CML9 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 7.681e-12
Identity = 32/66 (48.48%), Postives = 48/66 (72.73%), Query Frame = -1
Query:  398 SEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMM 595
            +E+EL     VFD  ++G I A +LR  M + G++LT+EE DEM+R+AD  G+G++ Y+EFVKV+M
Sbjct:   87 TEKELAACLDVFDDARSGVIPAEQLRQAMVSHGDRLTEEEADEMVRKADPAGEGRVEYKEFVKVLM 152          
BLAST of CB304523 vs. ExPASy Swiss-Prot
Match: CDC31_YEAST (Cell division control protein 31 OS=Saccharomyces cerevisiae GN=CDC31 PE=1 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 7.681e-12
Identity = 34/65 (52.31%), Postives = 43/65 (66.15%), Query Frame = -1
Query:  404 DSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKV 598
            D  +E+K AF++FD D  G IS   LR V   LGE LTDEE+  MI E D+DGDG+IN  EF+ +
Sbjct:   93 DPLDEIKRAFQLFDDDHTGKISIKNLRRVAKELGETLTDEELRAMIEEFDLDGDGEINENEFIAI 157          
BLAST of CB304523 vs. ExPASy Swiss-Prot
Match: TNNC1_HOMAM (Troponin C, isoform 1 OS=Homarus americanus PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.003e-11
Identity = 29/71 (40.85%), Postives = 50/71 (70.42%), Query Frame = -1
Query:  401 EDEDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 613
            E+++   ++ELKEAFR++D+  NG+I+   L+ ++  L  KLT++ +D +I E D DG G I++ EF+K+M
Sbjct:   78 EEDEEALKKELKEAFRIYDRGGNGYITVHTLKEILRELDNKLTEDNLDSIIEEVDEDGSGTIDFNEFMKMM 148          
The following BLAST results are available for this feature:
BLAST of CB304523 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 272
Match NameE-valueIdentityDescription
CATR_ATRNU5.881e-1244.12Caltractin OS=Atriplex nummularia PE=2 SV=1[more]
CABP7_RAT5.881e-1246.58Calcium-binding protein 7 OS=Rattus norvegicus GN=... [more]
CABP7_PAPAN5.881e-1246.58Calcium-binding protein 7 OS=Papio anubis GN=CABP7... [more]
CABP7_MOUSE5.881e-1246.58Calcium-binding protein 7 OS=Mus musculus GN=Cabp7... [more]
CABP7_HUMAN5.881e-1246.58Calcium-binding protein 7 OS=Homo sapiens GN=CABP7... [more]
MLRN_CHICK7.681e-1244.78Myosin regulatory light chain 2, smooth muscle min... [more]
MLR4_SCHPO7.681e-1249.23Myosin regulatory light chain cdc4 OS=Schizosaccha... [more]
CML9_ORYSJ7.681e-1248.48Probable calcium-binding protein CML9 OS=Oryza sat... [more]
CDC31_YEAST7.681e-1252.31Cell division control protein 31 OS=Saccharomyces ... [more]
TNNC1_HOMAM1.003e-1140.85Troponin C, isoform 1 OS=Homarus americanus PE=1 S... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0001_IVaR_A12 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IVaR_A12 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304523 ID=CB304523; Name=CB304523; organism=Citrus sinensis; type=EST; length=613bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATAGGCCAAGAAACCTAAGC
TGATAGTCTGATACATAAAATAGGATACATATTTCGACCAAAAGAAAAAT
AAACATCGCAAGGGCAGAAATTAATGAAACACATTAAACAGACAACAACA
TTCATAGAACAGCAGAACAACTAAAATAATAAAAACCGAAAAGTTTTTCG
AGTCACAAGACATATTGACGAGGGAGACAACATTCTTCCTACACCATCAG
GCCCATCACCATTAAAAGACCATTGCTTCCTTTAGCCTGACCCTCATGAC
TATCAAATTAAAAATTGTAAAAGAGAAAACTAGGAATCCCTTTATAATTT
AGTCAACCCATTTTATAAGTATTGGTGGGTTGGGGTCATTACTTGGCCAT
CATAACCTTGACAAATTCCTCATAATTTATCTGGCCATCACCATCAACAT
CAGCTTCCCTTATCATCTCATCAACTTCTTCATCAGTAAGTTTCTCTCCT
AGGTTTGTCATCACATGGCGCAACTCAGCAGCTGAGATGAAACCATTCTG
ATCCTTGTCGAAAACCCGGAAGGCCTCTTTCAGCTCCTCCTCAGAGTCGG
TATCCTCATCTTC
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