CB304523

Overview
NameCB304523
Unique NameCB304523
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length613
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB304523 vs. ExPASy Swiss-Prot
Match: CML8_ORYSJ (Probable calcium-binding protein CML8 OS=Oryza sativa subsp. japonica GN=CML8 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.310e-11
Identity = 31/68 (45.59%), Postives = 48/68 (70.59%), Query Frame = -1
Query:  401 DTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 604
            + D+ EEL +AF++ DKD NG IS  +++ +    GE  T +EV EMI  AD +GDG++++EEF+K+M
Sbjct:  114 ERDAREELNKAFKIIDKDNNGKISDVDIQRLAIETGEPFTLDEVREMIEAADENGDGEVDHEEFLKMM 181          
BLAST of CB304523 vs. ExPASy Swiss-Prot
Match: CML2_ARATH (Calmodulin-like protein 2 OS=Arabidopsis thaliana GN=CML2 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.310e-11
Identity = 33/71 (46.48%), Postives = 53/71 (74.65%), Query Frame = -1
Query:  401 EDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEK--LTDEEVDEMIREADVDGDGQINYEEFVKVM 607
            E+ + EE+++EAFRVFD++ +GFI+  ELR V+ ++G K   T E+  +MI + DVDGDG +N++EF ++M
Sbjct:   71 EEKEEEEDMREAFRVFDQNGDGFITDEELRSVLASMGLKQGRTLEDCKKMISKVDVDGDGMVNFKEFKQMM 141          
BLAST of CB304523 vs. ExPASy Swiss-Prot
Match: CABP3_HUMAN (Calcium-binding protein 3 OS=Homo sapiens GN=CABP3 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.310e-11
Identity = 32/64 (50.00%), Postives = 50/64 (78.12%), Query Frame = -1
Query:  401 EELKEAFRVFDKDQNGFISAAELRHVMTNL-GEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 589
            +E+++AF+ FD + +G I+ AEL+  M  L GE+LT  E+ E++READV+GDG +++EEFVK+M
Sbjct:  127 QEMRDAFKEFDTNGDGEITLAELQQAMQRLLGERLTPREISEVVREADVNGDGTVDFEEFVKMM 190          
BLAST of CB304523 vs. ExPASy Swiss-Prot
Match: TNNC3_DROME (Troponin C, isoform 3 OS=Drosophila melanogaster GN=TpnC73F PE=2 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 1.711e-11
Identity = 30/71 (42.25%), Postives = 53/71 (74.65%), Query Frame = -1
Query:  401 DEDTDS-EEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 610
            +ED ++ ++EL+EAFR++DK  NGFI    L+ ++  L ++LT++E+D MI E D DG G ++++EF+++M
Sbjct:   82 EEDAEAMQKELREAFRLYDKQGNGFIPTTCLKEILKELDDQLTEQELDIMIEEIDSDGSGTVDFDEFMEMM 152          
BLAST of CB304523 vs. ExPASy Swiss-Prot
Match: CDC31_SCHPO (Cell division control protein 31 OS=Schizosaccharomyces pombe GN=cdc31 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.711e-11
Identity = 32/69 (46.38%), Postives = 45/69 (65.22%), Query Frame = -1
Query:  398 DTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMM 604
            + D  EE+K AF +FD D+ G IS   LR V   L E + D+E++ MI E D+D DG+IN +EF+ +MM
Sbjct:  105 ERDPLEEIKRAFELFDDDETGKISLRNLRRVAKELNENIDDQELEAMIEEFDLDQDGEINEQEFIAIMM 173          
BLAST of CB304523 vs. ExPASy Swiss-Prot
Match: TNNCA_HOMAM (Troponin C, isoform 2A OS=Homarus americanus PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.235e-11
Identity = 28/71 (39.44%), Postives = 51/71 (71.83%), Query Frame = -1
Query:  401 EDEDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 613
            E+++   + EL+EAFRV+DK+ NG+I+   L+ ++  L  +LT+E++D +I E D DG G +++ EF+++M
Sbjct:   78 EEDEEALKTELREAFRVYDKEGNGYITTDVLKEILRELDNRLTEEDLDSIIEEVDEDGSGTLDFNEFMEMM 148          
BLAST of CB304523 vs. ExPASy Swiss-Prot
Match: TNNC1_PONLE (Troponin C, isotype alpha OS=Pontastacus leptodactylus PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.235e-11
Identity = 29/71 (40.85%), Postives = 51/71 (71.83%), Query Frame = -1
Query:  401 EDEDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 613
            E+++   ++ELKEAFR++D+  +G+I+   LR ++  L  +LT++ +DE+I E D DG G I++ EF+K+M
Sbjct:   78 EEDEEALKKELKEAFRIYDRGGDGYITTQVLREILKELDNRLTEDNLDEIIEEIDEDGSGTIDFMEFMKMM 148          
BLAST of CB304523 vs. ExPASy Swiss-Prot
Match: TNNC1_PIG (Troponin C, slow skeletal and cardiac muscles OS=Sus scrofa GN=TNNC1 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.812e-11
Identity = 27/71 (38.03%), Postives = 52/71 (73.24%), Query Frame = -1
Query:  401 EDEDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 613
            +D    SEEEL + FR+FDK+ +G+I   EL+ ++   GE +T+++++E++++ D + DG+I+Y+EF++ M
Sbjct:   87 DDSKGKSEEELSDLFRMFDKNADGYIDLEELKIMLQATGETITEDDIEELMKDGDKNNDGRIDYDEFLEFM 157          
BLAST of CB304523 vs. ExPASy Swiss-Prot
Match: TNNC1_MOUSE (Troponin C, slow skeletal and cardiac muscles OS=Mus musculus GN=Tnnc1 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.812e-11
Identity = 27/71 (38.03%), Postives = 52/71 (73.24%), Query Frame = -1
Query:  401 EDEDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 613
            +D    SEEEL + FR+FDK+ +G+I   EL+ ++   GE +T+++++E++++ D + DG+I+Y+EF++ M
Sbjct:   87 DDSKGKSEEELSDLFRMFDKNADGYIDLDELKMMLQATGETITEDDIEELMKDGDKNNDGRIDYDEFLEFM 157          
BLAST of CB304523 vs. ExPASy Swiss-Prot
Match: TNNC1_BOVIN (Troponin C, slow skeletal and cardiac muscles OS=Bos taurus GN=TNNC1 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.812e-11
Identity = 27/71 (38.03%), Postives = 52/71 (73.24%), Query Frame = -1
Query:  401 EDEDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 613
            +D    SEEEL + FR+FDK+ +G+I   EL+ ++   GE +T+++++E++++ D + DG+I+Y+EF++ M
Sbjct:   87 DDSKGKSEEELSDLFRMFDKNADGYIDLEELKIMLQATGETITEDDIEELMKDGDKNNDGRIDYDEFLEFM 157          
The following BLAST results are available for this feature:
BLAST of CB304523 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 272
Match NameE-valueIdentityDescription
CML8_ORYSJ1.310e-1145.59Probable calcium-binding protein CML8 OS=Oryza sat... [more]
CML2_ARATH1.310e-1146.48Calmodulin-like protein 2 OS=Arabidopsis thaliana ... [more]
CABP3_HUMAN1.310e-1150.00Calcium-binding protein 3 OS=Homo sapiens GN=CABP3... [more]
TNNC3_DROME1.711e-1142.25Troponin C, isoform 3 OS=Drosophila melanogaster G... [more]
CDC31_SCHPO1.711e-1146.38Cell division control protein 31 OS=Schizosaccharo... [more]
TNNCA_HOMAM2.235e-1139.44Troponin C, isoform 2A OS=Homarus americanus PE=1 ... [more]
TNNC1_PONLE2.235e-1140.85Troponin C, isotype alpha OS=Pontastacus leptodact... [more]
TNNC1_PIG3.812e-1138.03Troponin C, slow skeletal and cardiac muscles OS=S... [more]
TNNC1_MOUSE3.812e-1138.03Troponin C, slow skeletal and cardiac muscles OS=M... [more]
TNNC1_BOVIN3.812e-1138.03Troponin C, slow skeletal and cardiac muscles OS=B... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0001_IVaR_A12 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IVaR_A12 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304523 ID=CB304523; Name=CB304523; organism=Citrus sinensis; type=EST; length=613bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATAGGCCAAGAAACCTAAGC
TGATAGTCTGATACATAAAATAGGATACATATTTCGACCAAAAGAAAAAT
AAACATCGCAAGGGCAGAAATTAATGAAACACATTAAACAGACAACAACA
TTCATAGAACAGCAGAACAACTAAAATAATAAAAACCGAAAAGTTTTTCG
AGTCACAAGACATATTGACGAGGGAGACAACATTCTTCCTACACCATCAG
GCCCATCACCATTAAAAGACCATTGCTTCCTTTAGCCTGACCCTCATGAC
TATCAAATTAAAAATTGTAAAAGAGAAAACTAGGAATCCCTTTATAATTT
AGTCAACCCATTTTATAAGTATTGGTGGGTTGGGGTCATTACTTGGCCAT
CATAACCTTGACAAATTCCTCATAATTTATCTGGCCATCACCATCAACAT
CAGCTTCCCTTATCATCTCATCAACTTCTTCATCAGTAAGTTTCTCTCCT
AGGTTTGTCATCACATGGCGCAACTCAGCAGCTGAGATGAAACCATTCTG
ATCCTTGTCGAAAACCCGGAAGGCCTCTTTCAGCTCCTCCTCAGAGTCGG
TATCCTCATCTTC
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