CB304523

Overview
NameCB304523
Unique NameCB304523
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length613
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB304523 vs. ExPASy Swiss-Prot
Match: MYL6_CHICK (Myosin light polypeptide 6 OS=Gallus gallus GN=MYL6 PE=1 SV=3)

HSP 1 Score: 68.1662 bits (165), Expect = 3.812e-11
Identity = 31/73 (42.47%), Postives = 52/73 (71.23%), Query Frame = -1
Query:  395 EDEDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMA 613
            +++D    E+  E  RVFDK+ NG +  AE+RHV+  LGEK+T+EEV++++   + D +G INYEE V+++++
Sbjct:   79 KNKDQGCFEDYVEGLRVFDKEGNGTVMGAEIRHVLVTLGEKMTEEEVEQLVAGHE-DSNGCINYEELVRMVLS 150          
BLAST of CB304523 vs. ExPASy Swiss-Prot
Match: MYL6B_HUMAN (Myosin light chain 6B OS=Homo sapiens GN=MYL6B PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.812e-11
Identity = 34/65 (52.31%), Postives = 46/65 (70.77%), Query Frame = -1
Query:  395 EELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMA 589
            E+  E FRVFDK+ NG +  AELRHV+T LGEK+T+EEV E +     D +G INYE F+K +++
Sbjct:  144 EDYLEGFRVFDKEGNGKVMGAELRHVLTTLGEKMTEEEV-ETVLAGHEDSNGCINYEAFLKHILS 207          
BLAST of CB304523 vs. ExPASy Swiss-Prot
Match: CABP5_MOUSE (Calcium-binding protein 5 OS=Mus musculus GN=Cabp5 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.812e-11
Identity = 31/64 (48.44%), Postives = 50/64 (78.12%), Query Frame = -1
Query:  401 EELKEAFRVFDKDQNGFISAAELRHVMTNL-GEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 589
            +E+++AF+ FD + +G I+ AEL+  M  L GEKLT  E+ E+++EAD++GDG +++EEFVK+M
Sbjct:  108 QEMRDAFKEFDANGDGEITLAELQQAMQRLLGEKLTPREIAEVVQEADINGDGTVDFEEFVKMM 171          
BLAST of CB304523 vs. ExPASy Swiss-Prot
Match: CABP5_HUMAN (Calcium-binding protein 5 OS=Homo sapiens GN=CABP5 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.812e-11
Identity = 31/64 (48.44%), Postives = 49/64 (76.56%), Query Frame = -1
Query:  401 EELKEAFRVFDKDQNGFISAAELRHVMTNL-GEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 589
            +E+++AF+ FD + +G I+  EL+  M  L GE+LT  E+ E++READV+GDG +++EEFVK+M
Sbjct:  108 QEMRDAFKEFDTNGDGEITLVELQQAMQRLLGERLTPREISEVVREADVNGDGTVDFEEFVKMM 171          
BLAST of CB304523 vs. ExPASy Swiss-Prot
Match: TNNC1_RABIT (Troponin C, slow skeletal and cardiac muscles OS=Oryctolagus cuniculus GN=TNNC1 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.979e-11
Identity = 27/71 (38.03%), Postives = 52/71 (73.24%), Query Frame = -1
Query:  401 EDEDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 613
            +D    SEEEL + FR+FDK+ +G+I   EL+ ++   GE +T+++++E++++ D + DG+I+Y+EF++ M
Sbjct:   87 DDSKGKSEEELSDLFRMFDKNADGYIDLDELKIMLQATGETITEDDIEELMKDGDKNNDGRIDYDEFLEFM 157          
BLAST of CB304523 vs. ExPASy Swiss-Prot
Match: TNNC1_HUMAN (Troponin C, slow skeletal and cardiac muscles OS=Homo sapiens GN=TNNC1 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.979e-11
Identity = 27/71 (38.03%), Postives = 52/71 (73.24%), Query Frame = -1
Query:  401 EDEDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 613
            +D    SEEEL + FR+FDK+ +G+I   EL+ ++   GE +T+++++E++++ D + DG+I+Y+EF++ M
Sbjct:   87 DDSKGKSEEELSDLFRMFDKNADGYIDLDELKIMLQATGETITEDDIEELMKDGDKNNDGRIDYDEFLEFM 157          
BLAST of CB304523 vs. ExPASy Swiss-Prot
Match: MYL6B_MOUSE (Myosin light chain 6B OS=Mus musculus GN=Myl6b PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.979e-11
Identity = 34/73 (46.58%), Postives = 49/73 (67.12%), Query Frame = -1
Query:  395 EDEDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMA 613
            ++ D  + E+  E  RVFDK+ NG +  AELRHV+T LGEK+T+EEV E +     D +G INYE F+K +++
Sbjct:  135 KNRDQGTYEDYLEGLRVFDKEGNGKVMGAELRHVLTTLGEKMTEEEV-ETVLAGHEDSNGCINYEAFLKHILS 206          
BLAST of CB304523 vs. ExPASy Swiss-Prot
Match: MYL4_HUMAN (Myosin light chain 4 OS=Homo sapiens GN=MYL4 PE=1 SV=3)

HSP 1 Score: 67.781 bits (164), Expect = 4.979e-11
Identity = 32/72 (44.44%), Postives = 50/72 (69.44%), Query Frame = -1
Query:  395 DEDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMA 610
            +++  + E+  E  RVFDK+ NG +  AELRHV+  LGEK+T+ EV++++   + D +G INYE FVK +M+
Sbjct:  126 NKEQGTYEDFVEGLRVFDKESNGTVMGAELRHVLATLGEKMTEAEVEQLLAGQE-DANGCINYEAFVKHIMS 196          
BLAST of CB304523 vs. ExPASy Swiss-Prot
Match: CML5_ARATH (Calmodulin-like protein 5 OS=Arabidopsis thaliana GN=CML5 PE=2 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 4.979e-11
Identity = 34/72 (47.22%), Postives = 53/72 (73.61%), Query Frame = -1
Query:  401 DEDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEK--LTDEEVDEMIREADVDGDGQINYEEFVKVM 610
            D +T+ EE++K+AF VFD+D +GFI+  EL+ VM +LG K   T +   +MI + D DGDG++NY+EF+++M
Sbjct:  136 DGETE-EEDMKDAFNVFDQDGDGFITVEELKSVMASLGLKQGKTLDGCKKMIMQVDADGDGRVNYKEFLQMM 206          
BLAST of CB304523 vs. ExPASy Swiss-Prot
Match: MYL9_BOVIN (Myosin regulatory light polypeptide 9 OS=Bos taurus GN=MYL9 PE=2 SV=3)

HSP 1 Score: 67.3958 bits (163), Expect = 6.503e-11
Identity = 29/67 (43.28%), Postives = 44/67 (65.67%), Query Frame = -1
Query:  401 TDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 601
            TD E+ ++ AF  FD++  G I    LR ++T +G++ TDEEVDE+ REA +D  G  NY EF +++
Sbjct:   97 TDPEDVIRNAFACFDEEATGTIQEDYLRELLTTMGDRFTDEEVDELYREAPIDKKGNFNYIEFTRIL 163          
The following BLAST results are available for this feature:
BLAST of CB304523 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 272
Match NameE-valueIdentityDescription
MYL6_CHICK3.812e-1142.47Myosin light polypeptide 6 OS=Gallus gallus GN=MYL... [more]
MYL6B_HUMAN3.812e-1152.31Myosin light chain 6B OS=Homo sapiens GN=MYL6B PE=... [more]
CABP5_MOUSE3.812e-1148.44Calcium-binding protein 5 OS=Mus musculus GN=Cabp5... [more]
CABP5_HUMAN3.812e-1148.44Calcium-binding protein 5 OS=Homo sapiens GN=CABP5... [more]
TNNC1_RABIT4.979e-1138.03Troponin C, slow skeletal and cardiac muscles OS=O... [more]
TNNC1_HUMAN4.979e-1138.03Troponin C, slow skeletal and cardiac muscles OS=H... [more]
MYL6B_MOUSE4.979e-1146.58Myosin light chain 6B OS=Mus musculus GN=Myl6b PE=... [more]
MYL4_HUMAN4.979e-1144.44Myosin light chain 4 OS=Homo sapiens GN=MYL4 PE=1 ... [more]
CML5_ARATH4.979e-1147.22Calmodulin-like protein 5 OS=Arabidopsis thaliana ... [more]
MYL9_BOVIN6.503e-1143.28Myosin regulatory light polypeptide 9 OS=Bos tauru... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0001_IVaR_A12 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IVaR_A12 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304523 ID=CB304523; Name=CB304523; organism=Citrus sinensis; type=EST; length=613bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATAGGCCAAGAAACCTAAGC
TGATAGTCTGATACATAAAATAGGATACATATTTCGACCAAAAGAAAAAT
AAACATCGCAAGGGCAGAAATTAATGAAACACATTAAACAGACAACAACA
TTCATAGAACAGCAGAACAACTAAAATAATAAAAACCGAAAAGTTTTTCG
AGTCACAAGACATATTGACGAGGGAGACAACATTCTTCCTACACCATCAG
GCCCATCACCATTAAAAGACCATTGCTTCCTTTAGCCTGACCCTCATGAC
TATCAAATTAAAAATTGTAAAAGAGAAAACTAGGAATCCCTTTATAATTT
AGTCAACCCATTTTATAAGTATTGGTGGGTTGGGGTCATTACTTGGCCAT
CATAACCTTGACAAATTCCTCATAATTTATCTGGCCATCACCATCAACAT
CAGCTTCCCTTATCATCTCATCAACTTCTTCATCAGTAAGTTTCTCTCCT
AGGTTTGTCATCACATGGCGCAACTCAGCAGCTGAGATGAAACCATTCTG
ATCCTTGTCGAAAACCCGGAAGGCCTCTTTCAGCTCCTCCTCAGAGTCGG
TATCCTCATCTTC
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