CB304523

Overview
NameCB304523
Unique NameCB304523
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length613
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB304523 vs. ExPASy Swiss-Prot
Match: ML12B_BOVIN (Myosin regulatory light chain 12B OS=Bos taurus GN=MYL12B PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.503e-11
Identity = 29/67 (43.28%), Postives = 44/67 (65.67%), Query Frame = -1
Query:  401 TDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 601
            TD E+ ++ AF  FD++  G I    LR ++T +G++ TDEEVDE+ REA +D  G  NY EF +++
Sbjct:   96 TDPEDVIRNAFACFDEEATGTIQEDYLRELLTTMGDRFTDEEVDELYREAPIDKKGNFNYIEFTRIL 162          
BLAST of CB304523 vs. ExPASy Swiss-Prot
Match: ML12A_PONAB (Myosin regulatory light chain 12A OS=Pongo abelii GN=MYL12A PE=2 SV=3)

HSP 1 Score: 67.3958 bits (163), Expect = 6.503e-11
Identity = 29/67 (43.28%), Postives = 44/67 (65.67%), Query Frame = -1
Query:  401 TDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 601
            TD E+ ++ AF  FD++  G I    LR ++T +G++ TDEEVDE+ REA +D  G  NY EF +++
Sbjct:   96 TDPEDVIRNAFACFDEEATGTIQEDYLRELLTTMGDRFTDEEVDELYREAPIDKKGNFNYIEFTRIL 162          
BLAST of CB304523 vs. ExPASy Swiss-Prot
Match: ML12A_HUMAN (Myosin regulatory light chain 12A OS=Homo sapiens GN=MYL12A PE=1 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 6.503e-11
Identity = 29/67 (43.28%), Postives = 44/67 (65.67%), Query Frame = -1
Query:  401 TDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 601
            TD E+ ++ AF  FD++  G I    LR ++T +G++ TDEEVDE+ REA +D  G  NY EF +++
Sbjct:   96 TDPEDVIRNAFACFDEEATGTIQEDYLRELLTTMGDRFTDEEVDELYREAPIDKKGNFNYIEFTRIL 162          
BLAST of CB304523 vs. ExPASy Swiss-Prot
Match: CML27_ARATH (Probable calcium-binding protein CML27 OS=Arabidopsis thaliana GN=CML27 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.503e-11
Identity = 30/67 (44.78%), Postives = 45/67 (67.16%), Query Frame = -1
Query:  401 TDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 601
            + S  E+++AF ++D+D+NG ISA+EL  V+  LG   + E+   MI   D DGDG +N+EEF K+M
Sbjct:   87 SSSAAEIRDAFDLYDQDKNGLISASELHQVLNRLGMSCSVEDCTRMIGPVDADGDGNVNFEEFQKMM 153          
BLAST of CB304523 vs. ExPASy Swiss-Prot
Match: CABP5_BOVIN (Calcium-binding protein 5 OS=Bos taurus GN=CABP5 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.503e-11
Identity = 29/64 (45.31%), Postives = 50/64 (78.12%), Query Frame = -1
Query:  401 EELKEAFRVFDKDQNGFISAAELRHVMTNL-GEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 589
            +E+++AF+ FD + +G I+  EL+  M  L G+KLT +E+ E+++EAD++GDG +++EEFVK+M
Sbjct:  108 QEMRDAFKEFDANGDGEITLGELQQAMQRLLGDKLTSQEISEVVQEADINGDGTVDFEEFVKMM 171          
BLAST of CB304523 vs. ExPASy Swiss-Prot
Match: TNNC1_CHICK (Troponin C, slow skeletal and cardiac muscles OS=Gallus gallus GN=TNNC1 PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.493e-11
Identity = 26/71 (36.62%), Postives = 52/71 (73.24%), Query Frame = -1
Query:  401 EDEDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 613
            +D    +EEEL + FR+FDK+ +G+I   EL+ ++   GE +T+++++E++++ D + DG+I+Y+EF++ M
Sbjct:   87 DDSKGKTEEELSDLFRMFDKNADGYIDLEELKIMLQATGETITEDDIEELMKDGDKNNDGRIDYDEFLEFM 157          
BLAST of CB304523 vs. ExPASy Swiss-Prot
Match: MYL1_RAT (Myosin light chain 1/3, skeletal muscle isoform OS=Rattus norvegicus GN=Myl1 PE=1 SV=2)

HSP 1 Score: 67.0106 bits (162), Expect = 8.493e-11
Identity = 33/72 (45.83%), Postives = 48/72 (66.67%), Query Frame = -1
Query:  395 DEDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMA 610
            ++D    E+  E  RVFDK+ NG +  AELRHV+  LGEK+ +EEV+ ++   + D +G INYE FVK +M+
Sbjct:  118 NKDQGGYEDFVEGLRVFDKEGNGTVMGAELRHVLATLGEKMKEEEVEALLAGQE-DSNGCINYEAFVKHIMS 188          
BLAST of CB304523 vs. ExPASy Swiss-Prot
Match: MYL1_RABIT (Myosin light chain 1/3, skeletal muscle isoform OS=Oryctolagus cuniculus GN=MYL1 PE=1 SV=3)

HSP 1 Score: 67.0106 bits (162), Expect = 8.493e-11
Identity = 34/72 (47.22%), Postives = 47/72 (65.28%), Query Frame = -1
Query:  395 DEDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMA 610
            ++D  + E+  E  RVFDK+ NG +  AELRHV+  LGEK+ +EEV E +     D +G INYE FVK +M+
Sbjct:  121 NKDQGTYEDFVEGLRVFDKEGNGTVMGAELRHVLATLGEKMKEEEV-EALMAGQEDSNGCINYEAFVKHIMS 191          
BLAST of CB304523 vs. ExPASy Swiss-Prot
Match: MYL1_MOUSE (Myosin light chain 1/3, skeletal muscle isoform OS=Mus musculus GN=Myl1 PE=1 SV=2)

HSP 1 Score: 67.0106 bits (162), Expect = 8.493e-11
Identity = 33/72 (45.83%), Postives = 48/72 (66.67%), Query Frame = -1
Query:  395 DEDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMA 610
            ++D    E+  E  RVFDK+ NG +  AELRHV+  LGEK+ +EEV+ ++   + D +G INYE FVK +M+
Sbjct:  117 NKDQGGYEDFVEGLRVFDKEGNGTVMGAELRHVLATLGEKMKEEEVEALLAGQE-DSNGCINYEAFVKHIMS 187          
BLAST of CB304523 vs. ExPASy Swiss-Prot
Match: MYL1_BOVIN (Myosin light chain 1/3, skeletal muscle isoform OS=Bos taurus GN=MYL1 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.493e-11
Identity = 34/72 (47.22%), Postives = 47/72 (65.28%), Query Frame = -1
Query:  395 DEDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMA 610
            ++D  + E+  E  RVFDK+ NG +  AELRHV+  LGEK+ +EEV E +     D +G INYE FVK +M+
Sbjct:  121 NKDQGTYEDFVEGLRVFDKEGNGTVMGAELRHVLATLGEKMKEEEV-EALMAGQEDSNGCINYEAFVKHIMS 191          
The following BLAST results are available for this feature:
BLAST of CB304523 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 272
Match NameE-valueIdentityDescription
ML12B_BOVIN6.503e-1143.28Myosin regulatory light chain 12B OS=Bos taurus GN... [more]
ML12A_PONAB6.503e-1143.28Myosin regulatory light chain 12A OS=Pongo abelii ... [more]
ML12A_HUMAN6.503e-1143.28Myosin regulatory light chain 12A OS=Homo sapiens ... [more]
CML27_ARATH6.503e-1144.78Probable calcium-binding protein CML27 OS=Arabidop... [more]
CABP5_BOVIN6.503e-1145.31Calcium-binding protein 5 OS=Bos taurus GN=CABP5 P... [more]
TNNC1_CHICK8.493e-1136.62Troponin C, slow skeletal and cardiac muscles OS=G... [more]
MYL1_RAT8.493e-1145.83Myosin light chain 1/3, skeletal muscle isoform OS... [more]
MYL1_RABIT8.493e-1147.22Myosin light chain 1/3, skeletal muscle isoform OS... [more]
MYL1_MOUSE8.493e-1145.83Myosin light chain 1/3, skeletal muscle isoform OS... [more]
MYL1_BOVIN8.493e-1147.22Myosin light chain 1/3, skeletal muscle isoform OS... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0001_IVaR_A12 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IVaR_A12 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304523 ID=CB304523; Name=CB304523; organism=Citrus sinensis; type=EST; length=613bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATAGGCCAAGAAACCTAAGC
TGATAGTCTGATACATAAAATAGGATACATATTTCGACCAAAAGAAAAAT
AAACATCGCAAGGGCAGAAATTAATGAAACACATTAAACAGACAACAACA
TTCATAGAACAGCAGAACAACTAAAATAATAAAAACCGAAAAGTTTTTCG
AGTCACAAGACATATTGACGAGGGAGACAACATTCTTCCTACACCATCAG
GCCCATCACCATTAAAAGACCATTGCTTCCTTTAGCCTGACCCTCATGAC
TATCAAATTAAAAATTGTAAAAGAGAAAACTAGGAATCCCTTTATAATTT
AGTCAACCCATTTTATAAGTATTGGTGGGTTGGGGTCATTACTTGGCCAT
CATAACCTTGACAAATTCCTCATAATTTATCTGGCCATCACCATCAACAT
CAGCTTCCCTTATCATCTCATCAACTTCTTCATCAGTAAGTTTCTCTCCT
AGGTTTGTCATCACATGGCGCAACTCAGCAGCTGAGATGAAACCATTCTG
ATCCTTGTCGAAAACCCGGAAGGCCTCTTTCAGCTCCTCCTCAGAGTCGG
TATCCTCATCTTC
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