CB304542

Overview
NameCB304542
Unique NameCB304542
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length612
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13741 contig Csv1_Contig13741:319..888. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304542 vs. ExPASy Swiss-Prot
Match: RL18A_DROME (60S ribosomal protein L18a OS=Drosophila melanogaster GN=RpL18A PE=1 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 6.960e-21
Identity = 50/86 (58.14%), Postives = 60/86 (69.77%), Query Frame = -3
Query:  353 WLRYQSRTGYXNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIKTATIPAKLCKRESTKQFHNSKIKFPLVFRKVRPPSRKL 610
            WLRY SR+G  NMY+EYRD T+ GAV Q Y +M +RHR R+  IQIIK  +IPA   +R   KQFH+SKIKFPLV R     +RKL
Sbjct:   81 WLRYDSRSGTHNMYREYRDLTVGGAVTQCYRDMGARHRARAHSIQIIKVDSIPAAKTRRVHVKQFHDSKIKFPLVQRVHHKGNRKL 166          
BLAST of CB304542 vs. ExPASy Swiss-Prot
Match: RL18A_DICDI (60S ribosomal protein L18a OS=Dictyostelium discoideum GN=rpl18a PE=3 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 1.551e-20
Identity = 53/98 (54.08%), Postives = 63/98 (64.29%), Query Frame = -3
Query:  317 WLRYQSRTGYXNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIKTATIPAKLCKRESTKQFHNSKIKFPLVFRKVRPPSRKLRTTYKATRPNLF 610
            ++RY SR+G  N+YKEYRD T  GAV QMY EMASRH  R   I II    I A L +R +TKQFH+SKIKFPL  R       K ++T+ A RPN F
Sbjct:   77 FIRYNSRSGTHNIYKEYRDLTRCGAVSQMYDEMASRHSARESSIHIIDIKEIAASLTRRANTKQFHDSKIKFPLTHR-----IAKSKSTFVANRPNTF 169          
BLAST of CB304542 vs. ExPASy Swiss-Prot
Match: RL18A_SPOFR (60S ribosomal protein L18a OS=Spodoptera frugiperda GN=RpL18A PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 7.696e-20
Identity = 48/98 (48.98%), Postives = 61/98 (62.24%), Query Frame = -3
Query:  317 WLRYQSRTGYXNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIKTATIPAKLCKRESTKQFHNSKIKFPLVFRKVRPPSRKLRTTYKATRPNLF 610
            WLRY+SR+G  NMY+EYRD ++ GAV Q Y +M +RHR R+  IQIIK   I A  C+R   KQFHNS I+FPL     R    K   T+   RP+ +
Sbjct:   81 WLRYESRSGVHNMYREYRDLSVGGAVTQCYRDMGARHRARAHSIQIIKVEVIKASACRRPQVKQFHNSTIRFPL---PKRVHHHKRLNTFAYKRPSTY 175          
BLAST of CB304542 vs. ExPASy Swiss-Prot
Match: RL18A_SALSA (60S ribosomal protein L18a OS=Salmo salar GN=rpl18a PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 4.988e-19
Identity = 48/98 (48.98%), Postives = 61/98 (62.24%), Query Frame = -3
Query:  317 WLRYQSRTGYXNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIKTATIPAKLCKRESTKQFHNSKIKFPLVFRKVRPPSRKLRTTYKATRPNLF 610
            WLR  SR+G  NMY+EYRD T + AV Q Y +M +RHR R+  I I+K   I A  C+R + KQFH+SKIKFPL  R +R   R+    +   RPN F
Sbjct:   81 WLRNDSRSGTHNMYREYRDLTTSAAVTQCYRDMGARHRARAHSIHIMKVQEIAANKCRRPAIKQFHDSKIKFPLPHRVLR---RQHNPRFTTKRPNTF 175          
BLAST of CB304542 vs. ExPASy Swiss-Prot
Match: RL18A_CAEEL (60S ribosomal protein L18a OS=Caenorhabditis elegans GN=rpl-20 PE=2 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 1.895e-18
Identity = 43/89 (48.31%), Postives = 60/89 (67.42%), Query Frame = -3
Query:  344 WLRYQSRTGYXNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIKTATIPAKLCKRESTKQFHNSKIKFPLVFRKVRPPSRKLRTT 610
            WL+Y SRTG+ NMY+EYRDTT+ GAV Q Y +M +RHR ++  I I+K  T+ A+  KR   K FH++KI+FPL  R  +  +  + TT
Sbjct:   84 WLKYDSRTGHHNMYREYRDTTVAGAVTQCYRDMGARHRAQADRIHILKVQTVKAEDTKRAGIKMFHDAKIRFPLPHRVTKRKNLSVFTT 172          
BLAST of CB304542 vs. ExPASy Swiss-Prot
Match: RL20_SCHPO (60S ribosomal protein L20 OS=Schizosaccharomyces pombe GN=rpl20a PE=1 SV=3)

HSP 1 Score: 81.2629 bits (199), Expect = 4.370e-15
Identity = 43/99 (43.43%), Postives = 57/99 (57.58%), Query Frame = -3
Query:  317 WLRYQSRTGYXNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIKTATIPAKL-CKRESTKQFHNSKIKFPLVFRKVRPPSRKLRTTYKATRPNLF 610
            W+RY SR+G  NMYKE+RDTT  GAVE MY +MA+RHR R   I+I+K   +  K   +R   KQ  N  +KFPL  R+        +  +   RP+ F
Sbjct:   77 WIRYDSRSGTHNMYKEFRDTTRVGAVEAMYADMAARHRARFRSIRILKVVEVEKKEDVRRNYVKQLLNPHLKFPLPHRRTGVVGLAGKKVFAPHRPSTF 175          
BLAST of CB304542 vs. ExPASy Swiss-Prot
Match: RL20_YEAST (60S ribosomal protein L20 OS=Saccharomyces cerevisiae GN=RPL20A PE=1 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 5.342e-13
Identity = 43/99 (43.43%), Postives = 55/99 (55.56%), Query Frame = -3
Query:  317 WLRYQSRTGYXNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIKTATIPAKL-CKRESTKQFHNSKIKFPLVFRKVRPPSRKLRTTYKATRPNLF 610
            W+RY SR+G  NMYKE RD +   AVE +Y +MA+RHR R   I I+K A I      KR+  KQF    +KFPL  R      +K   T+   RP+ F
Sbjct:   78 WVRYDSRSGTHNMYKEIRDVSRVAAVETLYQDMAARHRARFRSIHILKVAEIEKTADVKRQYVKQFLTKDLKFPLPHR-----VQKSTKTFSYKRPSTF 171          
The following BLAST results are available for this feature:
BLAST of CB304542 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
RL18A_DROME6.960e-2158.1460S ribosomal protein L18a OS=Drosophila melanogas... [more]
RL18A_DICDI1.551e-2054.0860S ribosomal protein L18a OS=Dictyostelium discoi... [more]
RL18A_SPOFR7.696e-2048.9860S ribosomal protein L18a OS=Spodoptera frugiperd... [more]
RL18A_SALSA4.988e-1948.9860S ribosomal protein L18a OS=Salmo salar GN=rpl18... [more]
RL18A_CAEEL1.895e-1848.3160S ribosomal protein L18a OS=Caenorhabditis elega... [more]
RL20_SCHPO4.370e-1543.4360S ribosomal protein L20 OS=Schizosaccharomyces p... [more]
RL20_YEAST5.342e-1343.4360S ribosomal protein L20 OS=Saccharomyces cerevis... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0001_IVaR_D05 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IVaR_D05 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304542 ID=CB304542; Name=CB304542; organism=Citrus sinensis; type=EST; length=612bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTGGACAAGCACAAAAAATT
AAATTAAAAGGTAACCTAACTGGAAAACCAAACATTTAATAGCATCCAAT
AGCAACATAAACGGTAACAAAAACATAAATTTTGCAATCCCAAAGATCAG
GTTCGCTAGTCTCAACACCTAATATTCTCAACATAAAAACAGGTATCCGT
TGAACAAAAACAACTGACATAAAGGTAACTACCAAAAATATTCTTAAAAA
AATAAATAGATATCCACTGTTAAACCCTCTTGAAGTCTCAATTATCAAAG
GATAAAAGAGTTACATAAACAAGTTAGGCCTTGTTGCTTTGTATGTGGTC
CTCAGCTTCCTGCTTGGTGGTCTCACCTTCCTGAACACCAAGGGAAACTT
GATTTTTGAATTGTGGAACTGCTTGGTGCTTTCTCTCTTGCATAGCTTGG
CAGGGATGGTAGCAGTCTTGATAATTTGAATGCAAGGAGACCTGACCCTA
TGGCGAGAAGCCATCTCAGTGTACATCTGCTCCACAGCCCCGTTCAGAGT
GGTATCACGGTACTCCTTGTACATATTGNGATAACCAGTTCGACTCTGAT
AACGCAACCAGA
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