CB304542
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CB304542 vs. ExPASy Swiss-Prot
Match: RL18A_DROME (60S ribosomal protein L18a OS=Drosophila melanogaster GN=RpL18A PE=1 SV=1) HSP 1 Score: 100.523 bits (249), Expect = 6.960e-21 Identity = 50/86 (58.14%), Postives = 60/86 (69.77%), Query Frame = -3 Query: 353 WLRYQSRTGYXNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIKTATIPAKLCKRESTKQFHNSKIKFPLVFRKVRPPSRKL 610 WLRY SR+G NMY+EYRD T+ GAV Q Y +M +RHR R+ IQIIK +IPA +R KQFH+SKIKFPLV R +RKL Sbjct: 81 WLRYDSRSGTHNMYREYRDLTVGGAVTQCYRDMGARHRARAHSIQIIKVDSIPAAKTRRVHVKQFHDSKIKFPLVQRVHHKGNRKL 166
BLAST of CB304542 vs. ExPASy Swiss-Prot
Match: RL18A_DICDI (60S ribosomal protein L18a OS=Dictyostelium discoideum GN=rpl18a PE=3 SV=2) HSP 1 Score: 99.3673 bits (246), Expect = 1.551e-20 Identity = 53/98 (54.08%), Postives = 63/98 (64.29%), Query Frame = -3 Query: 317 WLRYQSRTGYXNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIKTATIPAKLCKRESTKQFHNSKIKFPLVFRKVRPPSRKLRTTYKATRPNLF 610 ++RY SR+G N+YKEYRD T GAV QMY EMASRH R I II I A L +R +TKQFH+SKIKFPL R K ++T+ A RPN F Sbjct: 77 FIRYNSRSGTHNIYKEYRDLTRCGAVSQMYDEMASRHSARESSIHIIDIKEIAASLTRRANTKQFHDSKIKFPLTHR-----IAKSKSTFVANRPNTF 169
BLAST of CB304542 vs. ExPASy Swiss-Prot
Match: RL18A_SPOFR (60S ribosomal protein L18a OS=Spodoptera frugiperda GN=RpL18A PE=2 SV=1) HSP 1 Score: 97.0561 bits (240), Expect = 7.696e-20 Identity = 48/98 (48.98%), Postives = 61/98 (62.24%), Query Frame = -3 Query: 317 WLRYQSRTGYXNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIKTATIPAKLCKRESTKQFHNSKIKFPLVFRKVRPPSRKLRTTYKATRPNLF 610 WLRY+SR+G NMY+EYRD ++ GAV Q Y +M +RHR R+ IQIIK I A C+R KQFHNS I+FPL R K T+ RP+ + Sbjct: 81 WLRYESRSGVHNMYREYRDLSVGGAVTQCYRDMGARHRARAHSIQIIKVEVIKASACRRPQVKQFHNSTIRFPL---PKRVHHHKRLNTFAYKRPSTY 175
BLAST of CB304542 vs. ExPASy Swiss-Prot
Match: RL18A_SALSA (60S ribosomal protein L18a OS=Salmo salar GN=rpl18a PE=2 SV=1) HSP 1 Score: 94.3597 bits (233), Expect = 4.988e-19 Identity = 48/98 (48.98%), Postives = 61/98 (62.24%), Query Frame = -3 Query: 317 WLRYQSRTGYXNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIKTATIPAKLCKRESTKQFHNSKIKFPLVFRKVRPPSRKLRTTYKATRPNLF 610 WLR SR+G NMY+EYRD T + AV Q Y +M +RHR R+ I I+K I A C+R + KQFH+SKIKFPL R +R R+ + RPN F Sbjct: 81 WLRNDSRSGTHNMYREYRDLTTSAAVTQCYRDMGARHRARAHSIHIMKVQEIAANKCRRPAIKQFHDSKIKFPLPHRVLR---RQHNPRFTTKRPNTF 175
BLAST of CB304542 vs. ExPASy Swiss-Prot
Match: RL18A_CAEEL (60S ribosomal protein L18a OS=Caenorhabditis elegans GN=rpl-20 PE=2 SV=2) HSP 1 Score: 92.4337 bits (228), Expect = 1.895e-18 Identity = 43/89 (48.31%), Postives = 60/89 (67.42%), Query Frame = -3 Query: 344 WLRYQSRTGYXNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIKTATIPAKLCKRESTKQFHNSKIKFPLVFRKVRPPSRKLRTT 610 WL+Y SRTG+ NMY+EYRDTT+ GAV Q Y +M +RHR ++ I I+K T+ A+ KR K FH++KI+FPL R + + + TT Sbjct: 84 WLKYDSRTGHHNMYREYRDTTVAGAVTQCYRDMGARHRAQADRIHILKVQTVKAEDTKRAGIKMFHDAKIRFPLPHRVTKRKNLSVFTT 172
BLAST of CB304542 vs. ExPASy Swiss-Prot
Match: RL20_SCHPO (60S ribosomal protein L20 OS=Schizosaccharomyces pombe GN=rpl20a PE=1 SV=3) HSP 1 Score: 81.2629 bits (199), Expect = 4.370e-15 Identity = 43/99 (43.43%), Postives = 57/99 (57.58%), Query Frame = -3 Query: 317 WLRYQSRTGYXNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIKTATIPAKL-CKRESTKQFHNSKIKFPLVFRKVRPPSRKLRTTYKATRPNLF 610 W+RY SR+G NMYKE+RDTT GAVE MY +MA+RHR R I+I+K + K +R KQ N +KFPL R+ + + RP+ F Sbjct: 77 WIRYDSRSGTHNMYKEFRDTTRVGAVEAMYADMAARHRARFRSIRILKVVEVEKKEDVRRNYVKQLLNPHLKFPLPHRRTGVVGLAGKKVFAPHRPSTF 175
BLAST of CB304542 vs. ExPASy Swiss-Prot
Match: RL20_YEAST (60S ribosomal protein L20 OS=Saccharomyces cerevisiae GN=RPL20A PE=1 SV=2) HSP 1 Score: 74.3294 bits (181), Expect = 5.342e-13 Identity = 43/99 (43.43%), Postives = 55/99 (55.56%), Query Frame = -3 Query: 317 WLRYQSRTGYXNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIKTATIPAKL-CKRESTKQFHNSKIKFPLVFRKVRPPSRKLRTTYKATRPNLF 610 W+RY SR+G NMYKE RD + AVE +Y +MA+RHR R I I+K A I KR+ KQF +KFPL R +K T+ RP+ F Sbjct: 78 WVRYDSRSGTHNMYKEIRDVSRVAAVETLYQDMAARHRARFRSIHILKVAEIEKTADVKRQYVKQFLTKDLKFPLPHR-----VQKSTKTFSYKRPSTF 171 The following BLAST results are available for this feature:
BLAST of CB304542 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 17
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Sequences
The
following sequences are available for this feature:
EST sequence >CB304542 ID=CB304542; Name=CB304542; organism=Citrus sinensis; type=EST; length=612bpback to top |