CB304552

Overview
NameCB304552
Unique NameCB304552
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length455
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB304552 vs. ExPASy Swiss-Prot
Match: EXP11_ORYSJ (Expansin-A11 OS=Oryza sativa subsp. japonica GN=EXPA11 PE=2 SV=2)

HSP 1 Score: 204.142 bits (518), Expect = 2.232e-52
Identity = 90/124 (72.58%), Postives = 106/124 (85.48%), Query Frame = -2
Query:   80 GGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLVTNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNFYFNGQSLFFQVTASDGRTVTSNNVVPANW 451
            GGWCNPP  HFDMAEPAF +IAQ RAG+VP+ +RR+ CAK+GGIRFT+ GHSYFNLVLVTNVGGAGDV +VS+KGS++GWQAMS NWG NWQ+    +GQ L F+VTASDGRTVTS+NV P+ W
Sbjct:  114 GGWCNPPRPHFDMAEPAFTRIAQARAGVVPVQYRRVACAKQGGIRFTITGHSYFNLVLVTNVGGAGDVTAVSVKGSRSGWQAMSHNWGANWQNGANLDGQPLSFRVTASDGRTVTSDNVAPSGW 237          
BLAST of CB304552 vs. ExPASy Swiss-Prot
Match: EXPA6_ORYSJ (Expansin-A6 OS=Oryza sativa subsp. japonica GN=EXPA6 PE=2 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 4.209e-51
Identity = 89/130 (68.46%), Postives = 110/130 (84.62%), Query Frame = -2
Query:   80 GGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLVTNVGGAGDVHSVSIKGSKTG------WQAMSRNWGQNWQSNFYFNGQSLFFQVTASDGRTVTSNNVVPANW 451
            GGWCNPP +HFD+AEPAFL+IA++ AGIVP+SFRR+ CA+KGG+RFTVNGH+YFNLVLVTNVGGAGDV S+++KGS +G      WQ MSRNWGQNWQSN Y +G++L F+VTA DGR++T  +V PA W
Sbjct:  119 GGWCNPPRRHFDLAEPAFLRIARHAAGIVPVSFRRVACARKGGVRFTVNGHAYFNLVLVTNVGGAGDVRSLAVKGSGSGSRVGGRWQPMSRNWGQNWQSNAYLDGKALSFRVTAGDGRSLTCADVAPAGW 248          
BLAST of CB304552 vs. ExPASy Swiss-Prot
Match: EXP16_ARATH (Expansin-A16 OS=Arabidopsis thaliana GN=EXPA16 PE=2 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 4.209e-51
Identity = 87/125 (69.60%), Postives = 103/125 (82.40%), Query Frame = -2
Query:   80 NGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLVTNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNFYFNGQSLFFQVTASDGRTVTSNNVVPANW 454
            NGGWCNPP  HFD+A P FL+IA+YRAGIVPIS+RR+ C K GGIRFT+NGH YFNLVL+TNV GAGD+   S+KGSKTGW +++RNWGQNWQSN    GQSL F+VT+SD RT TS N+ P+NW
Sbjct:  123 NGGWCNPPRSHFDLAMPVFLKIAEYRAGIVPISYRRVACRKSGGIRFTINGHRYFNLVLITNVAGAGDIARTSVKGSKTGWMSLTRNWGQNWQSNAVLVGQSLSFRVTSSDRRTSTSWNIAPSNW 247          
BLAST of CB304552 vs. ExPASy Swiss-Prot
Match: EXPA9_ARATH (Expansin-A9 OS=Arabidopsis thaliana GN=EXPA9 PE=2 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 5.497e-51
Identity = 89/125 (71.20%), Postives = 102/125 (81.60%), Query Frame = -2
Query:   80 NGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLVTNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNFYFNGQSLFFQVTASDGRTVTSNNVVPANW 454
            NGGWCNPP +HFD+A P FL IA+Y+AGIVP+S+RRIPC KKGGIRFT+NG  YFNLVLVTNV GAGDV  VS+KGS T W  +SRNWGQNWQSN    GQSL F+V  SDGR+ TSNN+ P+NW
Sbjct:  121 NGGWCNPPREHFDLAMPMFLSIAKYKAGIVPVSYRRIPCRKKGGIRFTINGFKYFNLVLVTNVAGAGDVIKVSVKGSNTQWLDLSRNWGQNWQSNALLVGQSLSFRVKTSDGRSSTSNNIAPSNW 245          
BLAST of CB304552 vs. ExPASy Swiss-Prot
Match: EXPA1_ORYSJ (Expansin-A1 OS=Oryza sativa subsp. japonica GN=EXPA1 PE=2 SV=2)

HSP 1 Score: 195.667 bits (496), Expect = 7.938e-50
Identity = 85/124 (68.55%), Postives = 103/124 (83.06%), Query Frame = -2
Query:   80 GGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLVTNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNFYFNGQSLFFQVTASDGRTVTSNNVVPANW 451
            GGWCNPP QHFDMAEPA+L+I  Y  GIVP+ ++R+PCAK+GG+RFT+NG  YF LVLV+NVGG G + SVSIKGS+TGW AMSRNWG NWQSN Y +GQSL F+VT+SDG+T+T  +V PA W
Sbjct:  125 GGWCNPPRQHFDMAEPAWLKIGVYVGGIVPVMYQRVPCAKQGGVRFTINGRDYFELVLVSNVGGVGSIQSVSIKGSRTGWMAMSRNWGVNWQSNAYLDGQSLSFKVTSSDGQTLTFLDVAPAGW 248          
BLAST of CB304552 vs. ExPASy Swiss-Prot
Match: EXPA3_ARATH (Expansin-A3 OS=Arabidopsis thaliana GN=EXPA3 PE=2 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 2.309e-49
Identity = 89/125 (71.20%), Postives = 101/125 (80.80%), Query Frame = -2
Query:   80 NGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLVTNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNFYFNGQSLFFQVTASDGRTVTSNNVVPANW 454
            +GGWCNPP +HFD+A P FL+I  YRAGIVP+S+RR+PC K GGIRFTVNG  YFNLVLVTNV GAGD++ VS+KGSKT W  MSRNWGQNWQSN    GQSL F+VTASD R+ TS NV PA W
Sbjct:  125 DGGWCNPPREHFDLAMPMFLKIGLYRAGIVPVSYRRVPCRKIGGIRFTVNGFRYFNLVLVTNVAGAGDINGVSVKGSKTDWVRMSRNWGQNWQSNAVLIGQSLSFRVTASDRRSSTSWNVAPATW 249          
BLAST of CB304552 vs. ExPASy Swiss-Prot
Match: EXPA7_ORYSJ (Expansin-A7 OS=Oryza sativa subsp. japonica GN=EXPA7 PE=2 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 3.016e-49
Identity = 85/125 (68.00%), Postives = 98/125 (78.40%), Query Frame = -2
Query:   80 NGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLVTNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNFYFNGQSLFFQVTASDGRTVTSNNVVPANW 454
            NGGWCNPP  HFD+A P FL IA+YRAGIVP+S+RR+PC KKGG+RFT+NG  YFNLVL+TNV GAGD+   S+KG+ TGW  MSRNWGQNWQSN    GQ+L F+VT SD RT TS N  PA W
Sbjct:  127 NGGWCNPPRPHFDLAMPMFLHIAEYRAGIVPVSYRRVPCRKKGGVRFTINGFRYFNLVLITNVAGAGDIVRASVKGTSTGWMPMSRNWGQNWQSNSVLVGQALSFRVTGSDRRTSTSWNAAPAGW 251          
BLAST of CB304552 vs. ExPASy Swiss-Prot
Match: EXPA5_ORYSJ (Expansin-A5 OS=Oryza sativa subsp. japonica GN=EXPA5 PE=2 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 3.939e-49
Identity = 84/126 (66.67%), Postives = 104/126 (82.54%), Query Frame = -2
Query:   80 NGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLVTNVGGAGDVHSVSIKGSKT-GWQAMSRNWGQNWQSNFYFNGQSLFFQVTASDGRTVTSNNVVPANW 454
            +GGWCNPP  HFDM++P F +IA ++AGIVP+S+RR+ C KKGGIRFT+NGHSYFNLVLVTNVGGAGDVH+V++K  ++  WQA+SRNWGQNWQS    +GQ+L F+VT  DGR+V SNN VP  W
Sbjct:  154 DGGWCNPPRAHFDMSQPVFQRIALFKAGIVPVSYRRVACQKKGGIRFTINGHSYFNLVLVTNVGGAGDVHAVAVKSERSAAWQALSRNWGQNWQSAALLDGQALSFRVTTGDGRSVVSNNAVPRGW 279          
BLAST of CB304552 vs. ExPASy Swiss-Prot
Match: EXPA6_ARATH (Expansin-A6 OS=Arabidopsis thaliana GN=EXPA6 PE=2 SV=2)

HSP 1 Score: 192.971 bits (489), Expect = 5.145e-49
Identity = 85/125 (68.00%), Postives = 101/125 (80.80%), Query Frame = -2
Query:   80 NGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLVTNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNFYFNGQSLFFQVTASDGRTVTSNNVVPANW 454
            NGGWCNPP  HFD+A P FL+IA+YRAGIVP+SFRR+PC K+GGIRFT+NG  YFNLVLVTNV GAG++  + +KG+ T W  MSRNWGQNWQSN    GQSL F+VT+SD R+ TS N+ PANW
Sbjct:  120 NGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVSFRRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGNIVRLGVKGTHTSWMTMSRNWGQNWQSNSVLVGQSLSFRVTSSDRRSSTSWNIAPANW 244          
BLAST of CB304552 vs. ExPASy Swiss-Prot
Match: EXP21_ORYSJ (Expansin-A21 OS=Oryza sativa subsp. japonica GN=EXPA21 PE=2 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 1.955e-48
Identity = 83/127 (65.35%), Postives = 105/127 (82.68%), Query Frame = -2
Query:   80 GGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLVTNVGGAGDVHSVSIK---GSKTGWQAMSRNWGQNWQSNFYFNGQSLFFQVTASDGRTVTSNNVVPANW 451
            GGWCNPPL HFD+++PAFL+IA++++GIVP+S+RR+ C +KGG+RFT+NGHSYFNLVLV+NVGGAGDVH+V++K   G K  WQAM+RNWGQNWQS    +GQ+L F VT  D R+V S NV PA W
Sbjct:  126 GGWCNPPLHHFDLSQPAFLRIARFQSGIVPVSYRRVACRRKGGMRFTINGHSYFNLVLVSNVGGAGDVHAVAVKAGGGRKARWQAMARNWGQNWQSGALLDGQALSFTVTTGDRRSVVSYNVAPAGW 252          
The following BLAST results are available for this feature:
BLAST of CB304552 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 64
Match NameE-valueIdentityDescription
EXP11_ORYSJ2.232e-5272.58Expansin-A11 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXPA6_ORYSJ4.209e-5168.46Expansin-A6 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXP16_ARATH4.209e-5169.60Expansin-A16 OS=Arabidopsis thaliana GN=EXPA16 PE=... [more]
EXPA9_ARATH5.497e-5171.20Expansin-A9 OS=Arabidopsis thaliana GN=EXPA9 PE=2 ... [more]
EXPA1_ORYSJ7.938e-5068.55Expansin-A1 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXPA3_ARATH2.309e-4971.20Expansin-A3 OS=Arabidopsis thaliana GN=EXPA3 PE=2 ... [more]
EXPA7_ORYSJ3.016e-4968.00Expansin-A7 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXPA5_ORYSJ3.939e-4966.67Expansin-A5 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXPA6_ARATH5.145e-4968.00Expansin-A6 OS=Arabidopsis thaliana GN=EXPA6 PE=2 ... [more]
EXP21_ORYSJ1.955e-4865.35Expansin-A21 OS=Oryza sativa subsp. japonica GN=EX... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0001_IVaR_E03 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IVaR_E03 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304552 ID=CB304552; Name=CB304552; organism=Citrus sinensis; type=EST; length=455bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGAATCTTAAAATCTAAAAC
TGACCACCCTCAAAGGGTTGCCCAAATTGCCAATTTGCAGGCACAACATT
GTTGCTAGTCACAGTCCTGCCGTCACTGGCTGTCACTTGGAAAAAAAGAC
TTTGGCCGTTAAAATAAAAATTGCTCTGCCAATTTTGGCCCCAGTTCCTT
GACATTGCTTGCCATCCAGTCTTTGAACCCTTGATTGATACTGAATGTAC
ATCTCCTGCTCCTCCGACATTTGTGACCAAAACCAGGTTGAAGTATGAGT
GTCCATTGACGGTAAACCTTATTCCTCCTTTCTTCGCACACGGGATCCTT
CTGAAGGAAATTGGGACGATGCCGGCGCGGTATTGGGCAATTTGCAAAAA
AGCGGGCTCAGCCATGTCAAAGTGCTGGAGGGGAGGATTGCACCAACCGC
CGTTG
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