CB304552

Overview
NameCB304552
Unique NameCB304552
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length455
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB304552 vs. ExPASy Swiss-Prot
Match: EXP18_ARATH (Expansin-A18 OS=Arabidopsis thaliana GN=EXPA18 PE=2 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 2.479e-35
Identity = 65/126 (51.59%), Postives = 92/126 (73.02%), Query Frame = -2
Query:   80 NGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLVTNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNFYFNGQSLFFQVTASDGR-TVTSNNVVPANW 454
            NGGWCNPP  HFD+ +PAF++IA ++AGI+P+S+RR+ C K GGIRF   G+ Y+ LV V NVGG GD+ ++++KGS+TGW  MS NWG ++Q+     GQSL F++T+   R T+ + N  PA+W
Sbjct:  119 NGGWCNPPRVHFDLTKPAFMKIANWKAGIIPVSYRRVACKKIGGIRFKFEGNGYWLLVYVMNVGGPGDIKTMAVKGSRTGWINMSHNWGASYQAFSSLYGQSLSFRLTSYTTRQTIYAYNAAPASW 244          
BLAST of CB304552 vs. ExPASy Swiss-Prot
Match: EXP12_ARATH (Expansin-A12 OS=Arabidopsis thaliana GN=EXPA12 PE=2 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 7.213e-35
Identity = 66/127 (51.97%), Postives = 90/127 (70.87%), Query Frame = -2
Query:   80 NGGWCNPPLQHFDMAEPAFLQIAQY-RAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLVTNVGGAGDVHSVSIKGSK-TGWQAMSRNWGQNWQSNFYFNGQSLFFQVTASDGRTVTSNNVVPANW 454
            N GWCN P  HFDM+ PAF +IA+    GIVP+ +RR+ C ++GG+RFT+ G   FN+V+++NVGG G V SV+++GSK   W  M+RNWG NWQS+    GQ L F+VT +D +T T  NVVP++W
Sbjct:  112 NNGWCNLPRHHFDMSSPAFFRIARRGNEGIVPVFYRRVGCKRRGGVRFTMRGQGNFNMVMISNVGGGGSVRSVAVRGSKGKTWLQMTRNWGANWQSSGDLRGQRLSFKVTLTDSKTQTFLNVVPSSW 238          
BLAST of CB304552 vs. ExPASy Swiss-Prot
Match: EXP13_ARATH (Expansin-A13 OS=Arabidopsis thaliana GN=EXPA13 PE=2 SV=2)

HSP 1 Score: 145.591 bits (366), Expect = 9.420e-35
Identity = 68/124 (54.84%), Postives = 87/124 (70.16%), Query Frame = -2
Query:   80 GGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLVTNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNFYFNGQSLFFQVTASDGRTVTSNNVVPANW 451
            GG CNPP +HF +   AF +IA ++AG +P+ +RRI C K+G +RFTV+G   F  VL+TNV G+GD+ +V IKGS+TGW  M RNWGQNW  N     Q+L F+VT+SD  TVTS NV P NW
Sbjct:  129 GGHCNPPNKHFVLPIEAFEKIAIWKAGNMPVQYRRINCRKEGSMRFTVDGGGIFISVLITNVAGSGDIAAVKIKGSRTGWLPMGRNWGQNWHINADLRNQALSFEVTSSDRSTVTSYNVSPKNW 252          
BLAST of CB304552 vs. ExPASy Swiss-Prot
Match: EXP20_ORYSJ (Expansin-A20 OS=Oryza sativa subsp. japonica GN=EXPA20 PE=2 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 2.741e-34
Identity = 63/124 (50.81%), Postives = 88/124 (70.97%), Query Frame = -2
Query:   80 GGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLVTNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNFYFNGQSLFFQVTASDGRTVTSNNVVPANW 451
            GGWCN    +FDM++PA+  I  Y AGIVPI ++++ C + GG+RF +NG +YF LVLVTN+ G+G + S+S+KGS TGW  M+RNWG NWQ      GQ+L F VT++ G+T+  ++ VPA W
Sbjct:  103 GGWCNATRPYFDMSQPAWENIGIYSAGIVPILYQQVKCWRYGGVRFIINGFNYFELVLVTNMAGSGSIVSMSVKGSCTGWIQMTRNWGANWQCLAGLAGQALSFNVTSTGGQTIVFDDAVPAGW 226          
BLAST of CB304552 vs. ExPASy Swiss-Prot
Match: EXP21_ARATH (Expansin-A21 OS=Arabidopsis thaliana GN=EXPA21 PE=2 SV=3)

HSP 1 Score: 140.969 bits (354), Expect = 2.320e-33
Identity = 63/122 (51.64%), Postives = 85/122 (69.67%), Query Frame = -2
Query:   80 WCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLVTNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNFYFNGQSLFFQVTASDGRTVTSNNVVPANW 445
            WC  P +HFD++ P F++IAQ +A +VP+ +RR+PCAK GG++F V G+     +L  NVGGAGD+ +VS KGSKT W  MSR WGQNW +N    GQS+  +VT SDG T    +V+PA+W
Sbjct:  129 WCYLPNKHFDLSLPMFIKIAQVKAKMVPVRYRRVPCAKTGGVKFEVKGNPNILTILPYNVGGAGDIIAVSAKGSKTAWVVMSRYWGQNWTTNVNLTGQSVSLRVTTSDGITKDFTDVMPASW 250          
BLAST of CB304552 vs. ExPASy Swiss-Prot
Match: EXP30_ORYSJ (Putative expansin-A30 OS=Oryza sativa subsp. japonica GN=EXPA30 PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 8.817e-33
Identity = 62/126 (49.21%), Postives = 90/126 (71.43%), Query Frame = -2
Query:   80 GGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLVTNVGGAGDVHSVSIK-GSKTGWQAMSRNWGQNWQSNFYFNGQSLFFQVTA-SDGRTVTSNNVVPANW 451
            GGWCNPP  HFD+++PAF+++A +RAGIVP+ +RR+PCA+ GG+RF + G+ Y+ L  V NV GAGDV  + +K G   GW  MS NWG ++Q+     GQ+L F+VT+ + G+T+ +  V PA+W
Sbjct:  128 GGWCNPPRAHFDLSKPAFMRMADWRAGIVPVMYRRVPCARAGGLRFALQGNPYWLLAYVMNVAGAGDVGDMWVKAGGGGGWVRMSHNWGASYQAFAQLGGQALSFKVTSYTTGQTILAAGVTPASW 253          
BLAST of CB304552 vs. ExPASy Swiss-Prot
Match: EXP20_ARATH (Expansin-A20 OS=Arabidopsis thaliana GN=EXPA20 PE=2 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 5.715e-32
Identity = 59/124 (47.58%), Postives = 85/124 (68.55%), Query Frame = -2
Query:   80 GGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLVTNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNFYFNGQSLFFQVTASDGRTVTSNNVVPANW 451
            GGWCN P +H +++  AF  IA+ RA ++PI +RR+ C ++GG+RF+++G S+F  VL++NVG  G+V  V +KG  T W  M+RNWGQNW S+    GQSL F+VT   G+T+ S +V P  W
Sbjct:  120 GGWCNFPKEHLELSHAAFTGIAETRAEMIPIQYRRVKCGRRGGLRFSLSGSSHFFQVLISNVGLDGEVVGVKVKGHTTAWIPMARNWGQNWHSSLDLIGQSLSFEVTLKGGKTIASYDVAPPYW 243          
BLAST of CB304552 vs. ExPASy Swiss-Prot
Match: EXP26_ORYSJ (Expansin-A26 OS=Oryza sativa subsp. japonica GN=EXPA26 PE=2 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 6.539e-28
Identity = 52/117 (44.44%), Postives = 81/117 (69.23%), Query Frame = -2
Query:   80 QHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLVTNVGGAGDVHSVSIKGSK-TGWQAMSRNWGQNWQSNFYFNGQSLFFQVTASDGRTVTSNNVVPANW 427
            +HFD+  PAFL IA+ + G+VP+S+R++ C ++GGI++T+ G+  +N+V+V NVGGAGDV  +++KG+K   W  + R+WGQ W++     G+SL F+V   D R  TS  V P +W
Sbjct:  162 EHFDLTMPAFLSIAEEKLGVVPVSYRKVACVRQGGIKYTITGNPSYNMVMVKNVGGAGDVVKLTVKGTKRVKWTPLQRSWGQLWKTEANLTGESLTFRVMTGDHRKATSWRVAPRDW 278          
BLAST of CB304552 vs. ExPASy Swiss-Prot
Match: EXP17_ORYSJ (Expansin-A17 OS=Oryza sativa subsp. japonica GN=EXPA17 PE=2 SV=2)

HSP 1 Score: 118.627 bits (296), Expect = 1.233e-26
Identity = 58/117 (49.57%), Postives = 77/117 (65.81%), Query Frame = -2
Query:  110 NGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLVTNVGGAGDVHSVSIKGSKTG--WQAMSRNWGQNWQSNFYFNGQSLFFQVTASDGRTV 454
            +GGWCNPP  HFDMA P+FL++AQ  AGIVP+ +RR+PC + GG+RF + G+ Y+ L+ V NVGGAGDV S+S+K S  G  W   + NWG  +Q         +F  +  SDG TV
Sbjct:  142 DGGWCNPPRHHFDMAPPSFLKLAQRVAGIVPVQYRRVPCQRTGGVRFCLQGNHYWLLLYVMNVGGAGDVSSLSVKTSGGGGAWIQAAHNWGITYQ---------VFAALDNSDGLTV 249          
BLAST of CB304552 vs. ExPASy Swiss-Prot
Match: EXPB5_ORYSJ (Expansin-B5 OS=Oryza sativa subsp. japonica GN=EXPB5 PE=2 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 7.760e-13
Identity = 44/139 (31.65%), Postives = 72/139 (51.80%), Query Frame = -2
Query:   80 GGWCNPPLQHFDMAEPAFLQIAQY-------RAGIVPISFRRIPCAKKGGIRFTVNGHS--YFNLVLVTNVGGAGDVHSVSIKGSKTG--WQAMSRNWGQNWQSNFYFNGQSL----FFQVTASDGRTVTSNNVVPANW 451
            GG C     HFDM+  AF  +A          AG++ I ++R+PC     + F V+  S  Y+  +LV    G GD+ +V I  ++ G  W+AM ++WG  W+ N    G+ L      ++T+  G+ + +NNV+P+ W
Sbjct:  124 GGVCLNEAAHFDMSGTAFGAMANRGMGDRLRSAGVLKIQYKRVPCRFAMNVAFKVDAGSNPYYLAILVQYANGDGDLAAVHIMEARGGGGWKAMQQSWGATWRLNSN-TGKPLSPPFSIRLTSGSGKVLVANNVIPSGW 261          
The following BLAST results are available for this feature:
BLAST of CB304552 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 64
Match NameE-valueIdentityDescription
EXP18_ARATH2.479e-3551.59Expansin-A18 OS=Arabidopsis thaliana GN=EXPA18 PE=... [more]
EXP12_ARATH7.213e-3551.97Expansin-A12 OS=Arabidopsis thaliana GN=EXPA12 PE=... [more]
EXP13_ARATH9.420e-3554.84Expansin-A13 OS=Arabidopsis thaliana GN=EXPA13 PE=... [more]
EXP20_ORYSJ2.741e-3450.81Expansin-A20 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP21_ARATH2.320e-3351.64Expansin-A21 OS=Arabidopsis thaliana GN=EXPA21 PE=... [more]
EXP30_ORYSJ8.817e-3349.21Putative expansin-A30 OS=Oryza sativa subsp. japon... [more]
EXP20_ARATH5.715e-3247.58Expansin-A20 OS=Arabidopsis thaliana GN=EXPA20 PE=... [more]
EXP26_ORYSJ6.539e-2844.44Expansin-A26 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP17_ORYSJ1.233e-2649.57Expansin-A17 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXPB5_ORYSJ7.760e-1331.65Expansin-B5 OS=Oryza sativa subsp. japonica GN=EXP... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0001_IVaR_E03 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IVaR_E03 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304552 ID=CB304552; Name=CB304552; organism=Citrus sinensis; type=EST; length=455bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGAATCTTAAAATCTAAAAC
TGACCACCCTCAAAGGGTTGCCCAAATTGCCAATTTGCAGGCACAACATT
GTTGCTAGTCACAGTCCTGCCGTCACTGGCTGTCACTTGGAAAAAAAGAC
TTTGGCCGTTAAAATAAAAATTGCTCTGCCAATTTTGGCCCCAGTTCCTT
GACATTGCTTGCCATCCAGTCTTTGAACCCTTGATTGATACTGAATGTAC
ATCTCCTGCTCCTCCGACATTTGTGACCAAAACCAGGTTGAAGTATGAGT
GTCCATTGACGGTAAACCTTATTCCTCCTTTCTTCGCACACGGGATCCTT
CTGAAGGAAATTGGGACGATGCCGGCGCGGTATTGGGCAATTTGCAAAAA
AGCGGGCTCAGCCATGTCAAAGTGCTGGAGGGGAGGATTGCACCAACCGC
CGTTG
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