CB304552

Overview
NameCB304552
Unique NameCB304552
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length455
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB304552 vs. ExPASy Swiss-Prot
Match: EXB11_ORYSJ (Expansin-B11 OS=Oryza sativa subsp. japonica GN=EXPB11 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.851e-12
Identity = 43/138 (31.16%), Postives = 73/138 (52.90%), Query Frame = -2
Query:   80 GGWCNPPLQHFDMAEPAFLQIAQ-------YRAGIVPISFRRIPCAKKG-GIRFTVN--GHSYFNLVLVTNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNFYFNGQSL----FFQVTASDGRTVTSNNVVPANW 451
            GG C     HFDM+  +   +A+         AGI+ + +RR+PC   G  I F V+   + ++  VL+    G GD+++V +  +  GW  M +NWG  W+ N    G++L      ++T+  G+ + +NNV+PA+W
Sbjct:  143 GGICLAGAAHFDMSGTSMGAMAKPGMADKLRAAGILQVQYRRVPCKYSGVNIAFRVDQGANPFYFEVLIEFEDGDGDLNAVDLMEAGCGWTPMVQNWGALWRYNSN-TGKALKAPFSLRLTSDSGKVLVANNVIPASW 279          
BLAST of CB304552 vs. ExPASy Swiss-Prot
Match: EXB14_ORYSJ (Putative expansin-B14 OS=Oryza sativa subsp. japonica GN=EXPB14 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 6.569e-12
Identity = 43/144 (29.86%), Postives = 71/144 (49.31%), Query Frame = -2
Query:   80 GGWCNPPLQHFDMAEPAFLQIAQ-------YRAGIVPISFRRIPCAKKG---GIRFTVNGHSYFNLVLVTNVGGAGDVHSVSI-----KGSKTGWQAMSRNWGQNWQSNFYFNGQS-----LFFQVTASDGRTVTSNNVVPANW 451
            GG C     HFD++  AF  +A+         AG +P+ + R+PC  +G     R     + Y+  VLV +  G GD+ +V +      G    W AM ++WG  W+ N   +G +     +  ++T+  GRT+ ++NV+PA W
Sbjct:  117 GGACLEEPVHFDLSGTAFGAMAKPGQDDQLRNAGKLPVQYARVPCKWQGVDIAFRVDAGSNQYYLAVLVEDEDGDGDLSAVDLMQSGGSGGGGSWAAMQQSWGAVWKYN---SGPAPLQAPMSIRLTSGSGRTLVASNVIPAGW 257          
BLAST of CB304552 vs. ExPASy Swiss-Prot
Match: EXB15_ORYSJ (Expansin-B15 OS=Oryza sativa subsp. japonica GN=EXPB15 PE=3 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 3.260e-11
Identity = 45/138 (32.61%), Postives = 72/138 (52.17%), Query Frame = -2
Query:   80 GGWCNPPLQHFDMAEPAFLQIA------QYRA-GIVPISFRRIPCAKKGGIRFT----VNGHSYFNLVLVTNVGGAGDVHSVSIK--GSKTGWQAMSRNWGQNWQSNFYFNGQSLF-FQVTASDGRTVTSNNVVPANW 451
            GG C     HFD++  AF  +A      Q RA G++ I + R+PC   GG++ T    V  +  +  VLV    G GD+  V +   G+   W  M ++WG  W+ N     Q+ F  ++T+S G+T+ ++NV+P+ W
Sbjct:  116 GGPCLSEPVHFDLSGTAFGAMANPGQADQLRAAGVLQIQYNRVPC-NWGGVKLTFVVDVGSNPNYFAVLVKYENGDGDLSGVELMQTGAGAAWTQMQQSWGAVWKLNAGSALQAPFSIRLTSSSGKTLVASNVIPSGW 252          
BLAST of CB304552 vs. ExPASy Swiss-Prot
Match: EXPB4_ORYSJ (Expansin-B4 OS=Oryza sativa subsp. japonica GN=EXPB4 PE=2 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 9.486e-11
Identity = 47/134 (35.07%), Postives = 67/134 (50.00%), Query Frame = -2
Query:   80 HFDMAEPAFLQIAQ-------YRAGIVPISFRRIPCAKKG-GIRFTVNGHS---YFNLVLVTNVGGAGDVHSVSIKGSKTG-------WQAMSRNWGQNWQSNFYFNGQSLF-FQVTASDGRTVTSNNVVPANW 424
            HFD++  AF ++A+         +GI+ I F R+PC   G  I F V  +S   YF  VLV    G GDV  V +  SKT        W  M  +WG  W+ +     Q+ F  ++    G+T+ +NNV+PANW
Sbjct:  141 HFDLSGTAFGRLAKPGLNDKLRHSGIIDIEFTRVPCEFPGLKIGFHVEEYSNPVYF-AVLVEYEDGDGDVVQVDLMESKTAHGPPTGRWTPMRESWGSIWRLDTNHRLQAPFSIRIRNESGKTLVANNVIPANW 273          
The following BLAST results are available for this feature:
BLAST of CB304552 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 64
Match NameE-valueIdentityDescription
EXB11_ORYSJ3.851e-1231.16Expansin-B11 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXB14_ORYSJ6.569e-1229.86Putative expansin-B14 OS=Oryza sativa subsp. japon... [more]
EXB15_ORYSJ3.260e-1132.61Expansin-B15 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXPB4_ORYSJ9.486e-1135.07Expansin-B4 OS=Oryza sativa subsp. japonica GN=EXP... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0001_IVaR_E03 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IVaR_E03 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304552 ID=CB304552; Name=CB304552; organism=Citrus sinensis; type=EST; length=455bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGAATCTTAAAATCTAAAAC
TGACCACCCTCAAAGGGTTGCCCAAATTGCCAATTTGCAGGCACAACATT
GTTGCTAGTCACAGTCCTGCCGTCACTGGCTGTCACTTGGAAAAAAAGAC
TTTGGCCGTTAAAATAAAAATTGCTCTGCCAATTTTGGCCCCAGTTCCTT
GACATTGCTTGCCATCCAGTCTTTGAACCCTTGATTGATACTGAATGTAC
ATCTCCTGCTCCTCCGACATTTGTGACCAAAACCAGGTTGAAGTATGAGT
GTCCATTGACGGTAAACCTTATTCCTCCTTTCTTCGCACACGGGATCCTT
CTGAAGGAAATTGGGACGATGCCGGCGCGGTATTGGGCAATTTGCAAAAA
AGCGGGCTCAGCCATGTCAAAGTGCTGGAGGGGAGGATTGCACCAACCGC
CGTTG
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