CB304568

Overview
NameCB304568
Unique NameCB304568
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length732
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2265 contig Csv1_Contig2265:578..1307. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304568 vs. ExPASy Swiss-Prot
Match: ACCO1_SOLLC (1-aminocyclopropane-1-carboxylate oxidase 1 OS=Solanum lycopersicum GN=ACO1 PE=2 SV=2)

HSP 1 Score: 107.842 bits (268), Expect = 6.037e-23
Identity = 64/187 (34.22%), Postives = 108/187 (57.75%), Query Frame = -2
Query:  165 ELKEVPEICRKEAVEWNHHVKQLGELLFGVLCEGLGLKTDRLKEKTFLEGRMMVG---HYYPYCPQPDLTVGITSHTDPGPLTILLQDDK-GGLQIKHGEEWVDVKPVPGALVINIGDILQIMSNDEYISVEHRVLANSSPEPRISIAVFFSPSERDSLYGPFPELI---SPEKPARFRQFTHTDYI 704
            ++ ++ E  R+   ++   +++L E L  +LCE LGL+   LK   +       G     YP CP+PDL  G+ +HTD G + +L QDDK  GLQ+   E+W+DV P+  ++V+N+GD L++++N +Y SV HRV+A +    R+S+A F++P   D++  P   L+   + E    + +F   DY+
Sbjct:  102 QVPDLDEEYREVMRDFAKRLEKLAEELLDLLCENLGLEKGYLKNAFYGSKGPNFGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDEQWIDVPPMRHSIVVNLGDQLEVITNGKYKSVLHRVIAQTD-GTRMSLASFYNPGS-DAVIYPAKTLVEKEAEESTQVYPKFVFDDYM 286          
BLAST of CB304568 vs. ExPASy Swiss-Prot
Match: NCS1_COPJA (S-norcoclaurine synthase 1 OS=Coptis japonica GN=NCS1 PE=1 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 7.884e-23
Identity = 65/197 (32.99%), Postives = 115/197 (58.38%), Query Frame = -2
Query:  108 PEICRKEAVEWNHHVKQLGELLFGVLCEGLGLKTDRLKE--KTFLEGRMMVGHYYPYCPQPDLTVGITSHTDPGPLTILLQ-DDKGGLQIKHGEEWVDVKPVPGALVINIGDILQIMSNDEYISVEHRVLANSSPEPRISIAVFFSPSERDSLYGPFPELISPEKPARFRQFTHTDYITRFFTKQLDGKTLVNYYRL 689
            P   R+   +++  ++++   L G++ + LGL+++ L +  +T       +      C +    +G++ H+D   LT+L+Q ++  GL IK  E+WV +KP+ GA V+NIGD+++IMSN  Y S+EHR + N+  E R+SIA F  P E  +  GP P+L+  E   +++   + DY+ R    +LDGK+L++  +L
Sbjct:  162 PTSFRETMEKYSMELQKVAMCLTGMMAKNLGLESEILTKPLRTVFNREDELLPSMSSCGEG---LGLSPHSDATGLTLLIQVNEVNGLHIKKDEKWVPIKPILGAFVVNIGDVIEIMSNGIYKSIEHRAVINTDKE-RLSIAAFHDP-EYGTKIGPLPDLVK-ENGVKYKTIDYEDYLIRSSNIKLDGKSLLDQMKL 352          
BLAST of CB304568 vs. ExPASy Swiss-Prot
Match: GAOX2_ORYSJ (Gibberellin 20 oxidase 2 OS=Oryza sativa subsp. japonica GN=20ox2 PE=1 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.030e-22
Identity = 70/178 (39.33%), Postives = 93/178 (52.25%), Query Frame = -2
Query:  129 VKQLGELLFGVLCEGLGLKTDRLKEKTFLEGRMMVGHYYPYCPQPDLTVGITSHTDPGPLTILLQDDKGGLQIKHGEEWVDVKPVPGALVINIGDILQIMSNDEYISVEHRVLANSSPEPRISIAVFFSPSERDSLYGPFPELISPEKPARF-----RQFTHTDYITRFFTKQLDGKT 647
            +K+L   +  +L   LG++    +E       +M  +YYP CP+P+ T+G   H DP  LTILLQDD GGL++    EW  V PVPGA+VINIGD    +SN  Y S  HR + N   E R S+A F  P E D +  P P   +P+    F      +FT   Y  R  T+ LD  T
Sbjct:  196 MKELSLTIMELLELSLGVERGYYREFFADSSSIMRCNYYPPCPEPERTLGTGPHCDPTALTILLQDDVGGLEVLVDGEWRPVSPVPGAMVINIGDTFMALSNGRYKSCLHRAVVNQRRERR-SLAFFLCPRE-DRVVRPPPSAATPQHYPDFTWADLMRFTQRHY--RADTRTLDAFT 369          
BLAST of CB304568 vs. ExPASy Swiss-Prot
Match: GAOX2_ORYSI (Gibberellin 20 oxidase 2 OS=Oryza sativa subsp. indica GN=20ox2 PE=1 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.030e-22
Identity = 70/178 (39.33%), Postives = 93/178 (52.25%), Query Frame = -2
Query:  129 VKQLGELLFGVLCEGLGLKTDRLKEKTFLEGRMMVGHYYPYCPQPDLTVGITSHTDPGPLTILLQDDKGGLQIKHGEEWVDVKPVPGALVINIGDILQIMSNDEYISVEHRVLANSSPEPRISIAVFFSPSERDSLYGPFPELISPEKPARF-----RQFTHTDYITRFFTKQLDGKT 647
            +K+L   +  +L   LG++    +E       +M  +YYP CP+P+ T+G   H DP  LTILLQDD GGL++    EW  V PVPGA+VINIGD    +SN  Y S  HR + N   E R S+A F  P E D +  P P   +P+    F      +FT   Y  R  T+ LD  T
Sbjct:  196 MKELSLTIMELLELSLGVERGYYREFFADSSSIMRCNYYPPCPEPERTLGTGPHCDPTALTILLQDDVGGLEVLVDGEWRPVSPVPGAMVINIGDTFMALSNGRYKSCLHRAVVNQRRERR-SLAFFLCPRE-DRVVRPPPSAATPQHYPDFTWADLMRFTQRHY--RADTRTLDAFT 369          
BLAST of CB304568 vs. ExPASy Swiss-Prot
Match: ACCO_TOBAC (1-aminocyclopropane-1-carboxylate oxidase OS=Nicotiana tabacum GN=ACO PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.345e-22
Identity = 66/187 (35.29%), Postives = 109/187 (58.29%), Query Frame = -2
Query:  165 EVPEI---CRKEAVEWNHHVKQLGELLFGVLCEGLGLKTDRLKEKTFLEGRMMVGHY---YPYCPQPDLTVGITSHTDPGPLTILLQDDK-GGLQIKHGEEWVDVKPVPGALVINIGDILQIMSNDEYISVEHRVLANSSPEPRISIAVFFSPSERDSLYGPFPELI---SPEKPARFRQFTHTDYI 695
            EVP++    R+   ++   +++L E L  +LCE LGL+   LK+  +       G     YP CP+PDL  G+ +HTD G + +L QDDK  GLQ+    +W+DV P+  ++V+N+GD L++++N +Y SV HRV+  +    R+S+A F++P   D++  P P L+   + E  A + +F   DY+
Sbjct:  102 EVPDLDDQYREVMRDFAKRLEKLAEELLDLLCENLGLEKGYLKKIFYGTKGPNFGSKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVTGLQLLKDGQWIDVPPMRLSIVVNLGDQLEVITNGKYKSVMHRVITQTD-GTRMSLASFYNPGS-DAVIFPAPTLVEKEAEESKAIYPKFVFDDYM 286          
BLAST of CB304568 vs. ExPASy Swiss-Prot
Match: IDS2_HORVU (Mugineic-acid 3-dioxygenase OS=Hordeum vulgare GN=IDS2 PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.996e-22
Identity = 63/185 (34.05%), Postives = 101/185 (54.59%), Query Frame = -2
Query:  138 PEICRKEAVEWNHHVKQLGELLFGVLCEGLGLKTDRLKEKTFLEGRMMVG-HYYPYCPQPDLTVGITSHTDPGPLTILLQDDKGGLQIKHGEEWVDVKPVPGALVINIGDILQIMSNDEYISVEHRVLANSSPEPRISIAVFFSPSERDSLYGPFPELISPEKPARFRQFTHTDYITRFFTKQLD 689
            P++ R+    +    + +   +  +LCEGLGL+ D         GR++V  +YYP  P P  T+G+  H D   +T+LL     GL+I +   W+ V+PVP +LVIN G  L++++N    +VEHR   N + EPR+S+A F  P++ D + GP  E +S + P R+R  T  ++  +     LD
Sbjct:  141 PQMLREVVGNYTSLARGVAMEILRLLCEGLGLRPDFFVGD-ISGGRVVVDINYYPPSPNPSRTLGLPPHCDRDLMTVLLPGAVPGLEIAYKGGWIKVQPVPNSLVINFGLQLEVVTNGYLKAVEHRAATNFA-EPRLSVASFIVPAD-DCVVGPAEEFVSEDNPPRYRTLTVGEFKRKHNVVNLD 322          
BLAST of CB304568 vs. ExPASy Swiss-Prot
Match: IDS3_HORVU (2'-deoxymugineic-acid 2'-dioxygenase OS=Hordeum vulgare GN=IDS3 PE=1 SV=3)

HSP 1 Score: 105.145 bits (261), Expect = 3.913e-22
Identity = 58/186 (31.18%), Postives = 97/186 (52.15%), Query Frame = -2
Query:  165 ELKEVPEICRKEAVEWNHHVKQLGELLFGVLCEGLGLKTDRLKEKTFLEGRMMVGH------YYPYCPQPDLTVGITSHTDPGPLTILLQDDKGGLQIKHGEEWVDVKPVPGALVINIGDILQIMSNDEYISVEHRVLANSSPEPRISIAVFFSPSERDSLYGPFPELISPEKPARFRQFTHTDYI 704
            E  + P+  R    ++    + +G+ L  +LCEG+G++ D      + EG +  G+      +YP CP PD  +G   H D   +T+LL     GL++ +  +W+ V P P A V+N G  L++++N    S+EHR + NS+   R S+A F  P++ + L GP  E +S E P  +R     D++
Sbjct:  137 EWPDTPKGLRDVIEKFTSQTRDVGKELLRLLCEGMGIQAD------YFEGDLSGGNVILNINHYPSCPNPDKALGQPPHCDRNLITLLLPGAVNGLEVSYKGDWIKVDPAPNAFVVNFGQQLEVVTNGLLKSIEHRAMTNSA-LARTSVATFIMPTQ-ECLIGPAKEFLSKENPPCYRTTMFRDFM 314          
BLAST of CB304568 vs. ExPASy Swiss-Prot
Match: G3OX1_ARATH (Gibberellin 3-beta-dioxygenase 1 OS=Arabidopsis thaliana GN=GA4 PE=1 SV=2)

HSP 1 Score: 105.145 bits (261), Expect = 3.913e-22
Identity = 57/173 (32.95%), Postives = 96/173 (55.49%), Query Frame = -2
Query:  165 EWNHHVKQLGELLFGVLCEGLGLKTDRLK------EKTFLEGRMMVGHYYPYCPQPDLTVGITSHTDPGPLTILLQDDKGGLQIKHGE-EWVDVKPVPGALVINIGDILQIMSNDEYISVEHRVLANSSPEPRISIAVFFSPSERDSLYGPFPELISPEKPARFRQFTHTDYI 662
            E+  H+K+L   L  +    LG+  + ++      +  + +  + + HY P CP+PD  +G+ +HTD   LTIL Q++  GLQ+   +  WV V P PG+LV+N+GD+  I+SN  + SV HR   N +   R+S+A  + P + D    P P+L+SP +   ++  T  +Y+
Sbjct:  169 EYEEHMKKLASKLMWLALNSLGVSEEDIEWASLSSDLNWAQAALQLNHY-PVCPEPDRAMGLAAHTDSTLLTILYQNNTAGLQVFRDDLGWVTVPPFPGSLVVNVGDLFHILSNGLFKSVLHRARVNQT-RARLSVAFLWGP-QSDIKISPVPKLVSPVESPLYQSVTWKEYL 338          
BLAST of CB304568 vs. ExPASy Swiss-Prot
Match: G3OX4_ARATH (Gibberellin 3-beta-dioxygenase 4 OS=Arabidopsis thaliana GN=At1g80330 PE=1 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 6.675e-22
Identity = 57/144 (39.58%), Postives = 81/144 (56.25%), Query Frame = -2
Query:  120 HYYPYCPQPDLTVGITSHTDPGPLTILLQDDKGGLQIKHGEE-WVDVKPVPGALVINIGDILQIMSNDEYISVEHRVLANSSPEPRISIAVFFSPSERDSLYGPFPELISPEKPARFRQFTHTDYIT---RFFTKQLDGKTLVN 539
            ++YP CP+P+  +G+ +HTD   LTIL Q + GGLQ+   E  WV V+P PG LV+NIGD+  I+SN +  SV HR   N +   RISIA  +     D    P  +L  P +P+ +R  T  +Y+      F K +D   +VN
Sbjct:  210 NHYPVCPEPERAMGLAAHTDSTILTILHQSNTGGLQVFREESGWVTVEPAPGVLVVNIGDLFHILSNGKIPSVVHRAKVNHT-RSRISIAYLWGGPAGDVQIAPISKLTGPAEPSLYRSITWKEYLQIKYEVFDKAMDAIRVVN 352          
BLAST of CB304568 vs. ExPASy Swiss-Prot
Match: FLS_SOLTU (Flavonol synthase/flavanone 3-hydroxylase OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 8.717e-22
Identity = 59/177 (33.33%), Postives = 99/177 (55.93%), Query Frame = -2
Query:  165 PEICRKEAVEWNHHVKQLGELLFGVLCEGLGLKTDRLKEKTFLEG--RMMVGHYYPYCPQPDLTVGITSHTDPGPLTILLQDDKGGLQIKHGEEWVDVKPVPGALVINIGDILQIMSNDEYISVEHRVLANSSPEPRISIAVFFSPSERDSLYGPFPELISPEKPARFRQFTHTDYI 689
            P   R+   E+   ++++ + +F  L  GLGL+   + E    E    M+  +YYP CP+PDL +G+ +HTD   +T+L+ ++   +Q+     W DV  +P A++++IGD ++I+SN +Y SV HR   N   + R+S  VF  PS    + GP P LI+   P +F+   + DY+
Sbjct:  169 PPSYREANEEYAKWLRKVADGIFRSLSLGLGLEGHEMMEAAGSEDIVYMLKINYYPPCPRPDLALGVVAHTDMSYITLLVPNE---VQVFKDGHWYDVNYIPNAIIVHIGDQVEILSNGKYKSVYHRTTVNKY-KTRMSWPVFLEPSSEHEV-GPIPNLINEANPPKFKTKKYKDYV 340          
The following BLAST results are available for this feature:
BLAST of CB304568 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 85
Match NameE-valueIdentityDescription
ACCO1_SOLLC6.037e-2334.221-aminocyclopropane-1-carboxylate oxidase 1 OS=Sol... [more]
NCS1_COPJA7.884e-2332.99S-norcoclaurine synthase 1 OS=Coptis japonica GN=N... [more]
GAOX2_ORYSJ1.030e-2239.33Gibberellin 20 oxidase 2 OS=Oryza sativa subsp. ja... [more]
GAOX2_ORYSI1.030e-2239.33Gibberellin 20 oxidase 2 OS=Oryza sativa subsp. in... [more]
ACCO_TOBAC1.345e-2235.291-aminocyclopropane-1-carboxylate oxidase OS=Nicot... [more]
IDS2_HORVU2.996e-2234.05Mugineic-acid 3-dioxygenase OS=Hordeum vulgare GN=... [more]
IDS3_HORVU3.913e-2231.182'-deoxymugineic-acid 2'-dioxygenase OS=Hordeum vu... [more]
G3OX1_ARATH3.913e-2232.95Gibberellin 3-beta-dioxygenase 1 OS=Arabidopsis th... [more]
G3OX4_ARATH6.675e-2239.58Gibberellin 3-beta-dioxygenase 4 OS=Arabidopsis th... [more]
FLS_SOLTU8.717e-2233.33Flavonol synthase/flavanone 3-hydroxylase OS=Solan... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0001_IVaR_F11 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IVaR_F11 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304568 ID=CB304568; Name=CB304568; organism=Citrus sinensis; type=EST; length=732bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTCTACACTTGAATTGTTATTCTT
ACGTAAGAATAGTTTATACAGGCACAAACAACCAGATTTACCAAGTTTTG
TTTCTTACAGCCTATAGTAATTCACCAATGTTTTTCCATCTAACTGCTTT
GTGAAGAACCTTGTTATATAGTCCGTGTGTGTGAACTGCCGAAAACGAGC
TGGCTTCTCTGGGGATATCAGCTCCGGGAATGGTCCATAAAGGCTGTCCC
TCTCGCTTGGACTGAAGAAAACAGCAATTGAGATTCGTGGTTCCGGGGAC
GAATTAGCCAATACTCTATGCTCTACACTTATGTATTCATCATTGGACAT
AATCTGAAGTATATCCCCAATGTTAATAACCAGAGCTCCTGGAACTGGTT
TAACATCCACCCATTCCTCACCATGCTTAATTTGCAGCCCACCTTTATCA
TCTTGCAACAAGATTGTCAATGGCCCTGGATCAGTATGAGATGTGATCCC
CACTGTCAGATCAGGCTGCGGACAGTAGGGATAATAATGGCCCACCATCA
TCCTCCCTTCCAGGAAGGTCTTTTCCTTCAACCTATCGGTTTTCAACCCC
AAACCTTCACACAGCACCCCAAACAAAAGCTCTCCGAGCTGTTTTACATG
GTGGTTCCACTCGACTGCCTCTTTCCTACATATTTCAGGAACTTCTTTCA
GCTCTGGCTCCGTCAGACCTAGCCTTATCTGC
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