CB304568

Overview
NameCB304568
Unique NameCB304568
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length732
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2265 contig Csv1_Contig2265:578..1307. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304568 vs. ExPASy Swiss-Prot
Match: ACCO_MUSAC (1-aminocyclopropane-1-carboxylate oxidase OS=Musa acuminata GN=MAO1B PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.942e-21
Identity = 66/187 (35.29%), Postives = 105/187 (56.15%), Query Frame = -2
Query:  132 EWNHHVKQLGELLFGVLCEGLGLKTDRLKEKTFLEGR------MMVGHYYPYCPQPDLTVGITSHTDPGPLTILLQDDK-GGLQIKHGEEWVDVKPVPGALVINIGDILQIMSNDEYISVEHRVLANSSPEPRISIAVFFSPSERDSL---YGPFPELISPEKPARFRQFTHTDYITRFFTKQLDGK 662
            E+   +++L E +  V+ E LG +   +K+    +G+        V HY P CP+ DL  G+ +HTD G + +L QDD+ GGLQ+     W+DV+P+  A+VIN GD ++++SN  Y S  HRVLA S    R SIA F++PS + ++    G   E  +P  PA + +F   DY+  +  ++ + K
Sbjct:  114 EYREEIRKLAEKMMEVMDENLGFEKGCIKKAFSGDGQHPPFFGTKVSHYPP-CPRLDLVKGLRAHTDAGGVILLFQDDQVGGLQMLKDGRWIDVQPLADAIVINTGDQIEVLSNGRYKSAWHRVLATSHGNRR-SIASFYNPSLKATIAPAAGAATEEAAP--PALYPKFLFGDYMDVYAKQKYEPK 296          
BLAST of CB304568 vs. ExPASy Swiss-Prot
Match: LDOX_VITVI (Leucoanthocyanidin dioxygenase OS=Vitis vinifera PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.259e-20
Identity = 65/193 (33.68%), Postives = 99/193 (51.30%), Query Frame = -2
Query:  186 VPEICRKEAVEWNHHVKQLGELLFGVLCEGLGLKTDRLK------EKTFLEGRMMVGHYYPYCPQPDLTVGITSHTDPGPLTILLQDDKGGLQIKHGEEWVDVKPVPGALVINIGDILQIMSNDEYISVEHRVLANSSPEPRISIAVFFSP------------------SERDSLYGPFPELISPEKPARFRQ 692
            VP  C     E++  ++ L   +  VL  GLGL+  RL+      E+  L+ ++   +YYP CPQP+L +G+ +HTD   LT +L +   GLQ+ +  +WV  K VP +++++IGD ++I+SN +Y S+ HR L N   + RIS AVF  P                  S   S   PFP + S     R R+
Sbjct:  172 VPATC-----EYSVKLRSLATKILSVLSLGLGLEEGRLEKEVGGMEELLLQKKI---NYYPKCPQPELALGVEAHTDVSALTFILHNMVPGLQLFYEGKWVTAKCVPNSIIMHIGDTIEILSNGKYKSILHRGLVNKE-KVRISWAVFCEPPKEKIILKAHCQRRCLRLSHHSSHLAPFPNIFSTSSSGRPRR 355          
BLAST of CB304568 vs. ExPASy Swiss-Prot
Match: GAOX1_ARATH (Gibberellin 20 oxidase 1 OS=Arabidopsis thaliana GN=20ox1 PE=2 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 2.147e-20
Identity = 61/166 (36.75%), Postives = 87/166 (52.41%), Query Frame = -2
Query:  165 EWNHHVKQLGELLFGVLCEGLGLKTDRLKEKTFLEGRMMVGHYYPYCPQPDLTVGITSHTDPGPLTILLQDDKGGLQIKHGEEWVDVKPVPGALVINIGDILQIMSNDEYISVEHRVLANSSPEPRISIAVFFSPSERDSLYGPFPELISPEKPARFRQFTHTDYI 662
            E+   +  L   +  +L   LG+K D  +E       +M  +YYP C +PDLT+G   H DP  LTIL QD   GLQ+    +W  ++P P A V+NIGD    +SND Y S  HR + NS  E R S+A F  P ++D +  P  EL+      R+  FT + ++
Sbjct:  189 EYCEAMSSLSLKIMELLGLSLGVKRDYFREFFEENDSIMRLNYYPPCIKPDLTLGTGPHCDPTSLTILHQDHVNGLQVFVENQWRSIRPNPKAFVVNIGDTFMALSNDRYKSCLHRAVVNSESE-RKSLAFFLCP-KKDRVVTPPRELLDSITSRRYPDFTWSMFL 352          
BLAST of CB304568 vs. ExPASy Swiss-Prot
Match: ACCO1_BRAJU (1-aminocyclopropane-1-carboxylate oxidase OS=Brassica juncea GN=ACO PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.147e-20
Identity = 63/191 (32.98%), Postives = 101/191 (52.88%), Query Frame = -2
Query:  165 LTEPELKEVPEIC---RKEAVEWNHHVKQLGELLFGVLCEGLGLKTDRLKEKTFLEGRMMVG---HYYPYCPQPDLTVGITSHTDPGPLTILLQDDK-GGLQIKHGEEWVDVKPVPGALVINIGDILQIMSNDEYISVEHRVLANSSPEPRISIAVFFSPSERDSLYGPFPELISPEKPARFRQFTHTDYI 716
            L +  L ++P++    R    ++   ++ L E L  +LCE LGL+   LK+          G     YP CP+P++  G+ +HTD G + +L QDDK  GLQ+    +W+DV P+  ++VIN+GD L++++N  Y S+ HRV+       R+SIA F++P   D+   P   L    K   +  F   DY+
Sbjct:   98 LPQSNLYDIPDMSDEYRTAMKDFGKRLENLAEDLLDLLCENLGLEKGYLKKVFHGTKGPTFGTKVSNYPACPKPEMIKGLRAHTDAGGIILLFQDDKVTGLQLLKDGDWIDVPPLNHSIVINLGDQLEVITNGRYKSMMHRVVTQKEGN-RMSIASFYNPGS-DAEISPASSLAC--KETEYPSFVFDDYM 284          
BLAST of CB304568 vs. ExPASy Swiss-Prot
Match: GAOX1_ORYSJ (Gibberellin 20 oxidase 1 OS=Oryza sativa subsp. japonica GN=20ox1 PE=2 SV=2)

HSP 1 Score: 98.5969 bits (244), Expect = 3.662e-20
Identity = 63/161 (39.13%), Postives = 86/161 (53.42%), Query Frame = -2
Query:  180 HHVKQLGELLFGVLCEGLGLKTDRLKE-KTFLEGR--MMVGHYYPYCPQPDLTVGITSHTDPGPLTILLQDDKGGLQIKHGEEWVDVKPVPGALVINIGDILQIMSNDEYISVEHRVLANSSPEPRISIAVFFSPSERDSLYGPFPELISPEKPARFRQFT 653
            H + +L   L  VL E LG+  DR    + F +    +M  +YYP C +P  T+G   H DP  LTIL QD  GGL++     W  ++P PGALV+N+GD    +SN  Y S  HR + NS+  PR S+A F  P E D++  P  EL+    P  +  FT
Sbjct:  176 HEMSRLSLELMEVLGESLGIVGDRRHYFRRFFQRNDSIMRLNYYPACQRPLDTLGTGPHCDPTSLTILHQDHVGGLEVWAEGRWRAIRPRPGALVVNVGDTFMALSNARYRSCLHRAVVNST-APRRSLAFFLCP-EMDTVVRPPEELVDDHHPRVYPDFT 334          
BLAST of CB304568 vs. ExPASy Swiss-Prot
Match: HY6H_HYONI (Hyoscyamine 6-dioxygenase OS=Hyoscyamus niger GN=H6H PE=1 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.783e-20
Identity = 59/198 (29.80%), Postives = 108/198 (54.55%), Query Frame = -2
Query:  108 EVPEICRKEAVEWNHHVKQLGELLFGVLCEGLGLKTDRLKEKTFLEGRMMVGHYYPYCPQPDLTVGITSHTDPGPLTILLQDDKGGLQ--IKHGEEWVDVKPVPGALVINIGDILQIMSNDEYISVEHRVLANSSPEPRISIAVFFSPSERDSLYGPFPELISPEKPARFRQFTHTDYITRFFTKQLDGKTLVNYYRL 695
            E P   R+   +++  V++L   +   +CEGLGLK     +    + +MM+ +YYP CP P  T+G   H D G L  LLQ D  GLQ  I     W+ V+P+P A V+N+G  L++++N+++    HRV+ + + + R+SIA    P +      P  EL++ + P  ++ ++++++   + + + D  + V  Y++
Sbjct:  149 EKPAKYREVVAKYSVEVRKLTMRMLDYICEGLGLKLGYF-DNELSQIQMMLTNYYPPCPDPSSTLGSGGHYD-GNLITLLQQDLPGLQQLIVKDATWIAVQPIPTAFVVNLGLTLKVITNEKFEGSIHRVVTDPTRD-RVSIATLIGP-DYSCTIEPAKELLNQDNPPLYKPYSYSEFADIYLSDKSDYDSGVKPYKI 342          
BLAST of CB304568 vs. ExPASy Swiss-Prot
Match: G2OX8_ARATH (Gibberellin 2-beta-dioxygenase 8 OS=Arabidopsis thaliana GN=GA2OX7 PE=1 SV=2)

HSP 1 Score: 97.8265 bits (242), Expect = 6.247e-20
Identity = 64/157 (40.76%), Postives = 81/157 (51.59%), Query Frame = -2
Query:  168 LGELLFGVLCEGLGLKTDRLKEKTFLEGRMMVGHYYPYCPQPDLTVGITSHTDPGPLTILLQDDKGGLQIKHGEEWVDVKPVPGALVINIGDILQIMSNDEYISVEHRVLANSSPEPRISIAVFFSPSERDSLYGPFPELISPEKPARFRQFTHTDY 638
            L  +L  VL E  G  +   KE        +  + YP CP+P    G+  HTD   LTIL QD  GGLQ+     W+ VKP P AL+INIGD+ Q  SN  Y SVEHRV+ N   E R S A F  PS     Y    E  S ++PA +R F+  ++
Sbjct:  165 LAYMLAEVLAEKSGQNSSFFKENCVRNTCYLRMNRYPPCPKPSEVYGLMPHTDSDFLTILYQDQVGGLQLIKDNRWIAVKPNPKALIINIGDLFQAWSNGMYKSVEHRVMTNPKVE-RFSTAYFMCPS-----YDAVIE-CSSDRPA-YRNFSFREF 313          
BLAST of CB304568 vs. ExPASy Swiss-Prot
Match: G3OX2_ARATH (Gibberellin 3-beta-dioxygenase 2 OS=Arabidopsis thaliana GN=GA4H PE=1 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 1.178e-18
Identity = 55/172 (31.98%), Postives = 91/172 (52.91%), Query Frame = -2
Query:  165 EWNHHVKQLGELLFGVLCEGLGLKTDRLK---EKTFLEGRMMVG--HYYPYCPQPDLTVGITSHTDPGPLTILLQDDKGGLQIKHGEE-WVDVKPVPGALVINIGDILQIMSNDEYISVEHRVLANSSPEPRISIAVFFSPSERDSLYGPFPELISPEKPARFRQFTHTDYI 662
            E+  H+++L   L       LG++   ++     +  +G   V   ++YP CP+PD  +G+ +HTD   +TIL Q++  GLQ+   +  WV   PVPG+LV+N+GD+L I++N  + SV HR   N     R S+A  + P   D +  P P+L+ P +   +   T   Y+
Sbjct:  162 EYEEHMQKLAAKLMWFALGSLGVEEKDIQWAGPNSDFQGTQAVIQLNHYPKCPEPDRAMGLAAHTDSTLMTILYQNNTAGLQVFRDDVGWVTAPPVPGSLVVNVGDLLHILTNGIFPSVLHRARVN-HVRSRFSMAYLWGPPS-DIMISPLPKLVDPLQSPLYPSLTWKQYL 331          
BLAST of CB304568 vs. ExPASy Swiss-Prot
Match: GAO1B_WHEAT (Gibberellin 20 oxidase 1-B OS=Triticum aestivum GN=GA20ox1B PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.625e-18
Identity = 59/148 (39.86%), Postives = 76/148 (51.35%), Query Frame = -2
Query:  180 VLCEGLGLKTDRLKEKTFLEGR--MMVGHYYPYCPQPDLTVGITSHTDPGPLTILLQDDKGGLQIKHGEEWVDVKPVPGALVINIGDILQIMSNDEYISVEHRVLANSSPEPRISIAVFFSPSERDSLYGPFPELISPEKPARFRQFT 617
            VL E LG+   R   + F EG   +M  +YYP C +P  T+G   H DP  LTIL QD+ GGLQ+     W  ++P   A V+NIGD    +SN  Y S  HR + NS   PR S+A F  P E D +  P   L+    P  +  FT
Sbjct:  181 VLGESLGV--GRAHYRRFFEGNDSIMRLNYYPPCQRPMETLGTGPHCDPTSLTILHQDNVGGLQVHTEGRWRSIRPRADAFVVNIGDTFMALSNGRYKSCLHRAVVNSK-VPRKSLAFFLCP-EMDKVVAPPGTLVDAANPRAYPDFT 324          
BLAST of CB304568 vs. ExPASy Swiss-Prot
Match: GAO1A_WHEAT (Gibberellin 20 oxidase 1-A OS=Triticum aestivum GN=GA20ox1A PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.428e-18
Identity = 59/148 (39.86%), Postives = 76/148 (51.35%), Query Frame = -2
Query:  180 VLCEGLGLKTDRLKEKTFLEGR--MMVGHYYPYCPQPDLTVGITSHTDPGPLTILLQDDKGGLQIKHGEEWVDVKPVPGALVINIGDILQIMSNDEYISVEHRVLANSSPEPRISIAVFFSPSERDSLYGPFPELISPEKPARFRQFT 617
            VL E LG+   R   + F EG   +M  +YYP C +P  T+G   H DP  LTIL QD+ GGLQ+     W  ++P   A V+NIGD    +SN  Y S  HR + NS   PR S+A F  P E D +  P   L+    P  +  FT
Sbjct:  181 VLGESLGV--GRAHYRRFFEGNDSIMRLNYYPPCQRPLETLGTGPHCDPTSLTILHQDNVGGLQVHTEGRWRSIRPRADAFVVNIGDTFMALSNGRYKSCLHRAVVNSR-VPRKSLAFFLCP-EMDKVVAPPGTLVDASNPRAYPDFT 324          
The following BLAST results are available for this feature:
BLAST of CB304568 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 85
Match NameE-valueIdentityDescription
ACCO_MUSAC1.942e-2135.291-aminocyclopropane-1-carboxylate oxidase OS=Musa ... [more]
LDOX_VITVI1.259e-2033.68Leucoanthocyanidin dioxygenase OS=Vitis vinifera P... [more]
GAOX1_ARATH2.147e-2036.75Gibberellin 20 oxidase 1 OS=Arabidopsis thaliana G... [more]
ACCO1_BRAJU2.147e-2032.981-aminocyclopropane-1-carboxylate oxidase OS=Brass... [more]
GAOX1_ORYSJ3.662e-2039.13Gibberellin 20 oxidase 1 OS=Oryza sativa subsp. ja... [more]
HY6H_HYONI4.783e-2029.80Hyoscyamine 6-dioxygenase OS=Hyoscyamus niger GN=H... [more]
G2OX8_ARATH6.247e-2040.76Gibberellin 2-beta-dioxygenase 8 OS=Arabidopsis th... [more]
G3OX2_ARATH1.178e-1831.98Gibberellin 3-beta-dioxygenase 2 OS=Arabidopsis th... [more]
GAO1B_WHEAT2.625e-1839.86Gibberellin 20 oxidase 1-B OS=Triticum aestivum GN... [more]
GAO1A_WHEAT3.428e-1839.86Gibberellin 20 oxidase 1-A OS=Triticum aestivum GN... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0001_IVaR_F11 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IVaR_F11 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304568 ID=CB304568; Name=CB304568; organism=Citrus sinensis; type=EST; length=732bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTCTACACTTGAATTGTTATTCTT
ACGTAAGAATAGTTTATACAGGCACAAACAACCAGATTTACCAAGTTTTG
TTTCTTACAGCCTATAGTAATTCACCAATGTTTTTCCATCTAACTGCTTT
GTGAAGAACCTTGTTATATAGTCCGTGTGTGTGAACTGCCGAAAACGAGC
TGGCTTCTCTGGGGATATCAGCTCCGGGAATGGTCCATAAAGGCTGTCCC
TCTCGCTTGGACTGAAGAAAACAGCAATTGAGATTCGTGGTTCCGGGGAC
GAATTAGCCAATACTCTATGCTCTACACTTATGTATTCATCATTGGACAT
AATCTGAAGTATATCCCCAATGTTAATAACCAGAGCTCCTGGAACTGGTT
TAACATCCACCCATTCCTCACCATGCTTAATTTGCAGCCCACCTTTATCA
TCTTGCAACAAGATTGTCAATGGCCCTGGATCAGTATGAGATGTGATCCC
CACTGTCAGATCAGGCTGCGGACAGTAGGGATAATAATGGCCCACCATCA
TCCTCCCTTCCAGGAAGGTCTTTTCCTTCAACCTATCGGTTTTCAACCCC
AAACCTTCACACAGCACCCCAAACAAAAGCTCTCCGAGCTGTTTTACATG
GTGGTTCCACTCGACTGCCTCTTTCCTACATATTTCAGGAACTTCTTTCA
GCTCTGGCTCCGTCAGACCTAGCCTTATCTGC
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