CB304573

Overview
NameCB304573
Unique NameCB304573
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length637
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13761 contig Csv1_Contig13761:79..715. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304573 vs. ExPASy Swiss-Prot
Match: RS26A_SCHPO (40S ribosomal protein S26-A OS=Schizosaccharomyces pombe GN=rps26a PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 4.515e-26
Identity = 50/75 (66.67%), Postives = 61/75 (81.33%), Query Frame = -3
Query:  411 NGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDGYTLPKLYAKMQYCVSCAIHS 635
            N GRNKHGRGH KF+RC NC +  PKDKAIKR+ +RN+VE AA+RD+ EA VY  Y +PK+Y K+QYCVSCAIH+
Sbjct:    7 NCGRNKHGRGHTKFVRCINCSRAVPKDKAIKRWNIRNMVETAAIRDLSEASVYSEYAIPKIYVKLQYCVSCAIHA 81          
BLAST of CB304573 vs. ExPASy Swiss-Prot
Match: RS26L_HUMAN (Putative 40S ribosomal protein S26-like 1 OS=Homo sapiens GN=RPS26P11 PE=5 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 4.226e-24
Identity = 49/75 (65.33%), Postives = 58/75 (77.33%), Query Frame = -3
Query:  411 NGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDGYTLPKLYAKMQYCVSCAIHS 635
            N    K GRGHV+ IRC+NC +C P DKAIK+F++RNIVE AAVRD+ E  V+D Y LPKLY K+ YCVSCAIHS
Sbjct:    7 NNSHAKKGRGHVQPIRCTNCVRCVPTDKAIKKFVIRNIVEAAAVRDISEVSVFDAYVLPKLYVKLHYCVSCAIHS 81          
BLAST of CB304573 vs. ExPASy Swiss-Prot
Match: RS26B_YEAST (40S ribosomal protein S26-B OS=Saccharomyces cerevisiae GN=RPS26B PE=1 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 7.208e-24
Identity = 51/75 (68.00%), Postives = 57/75 (76.00%), Query Frame = -3
Query:  411 NGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDGYTLPKLYAKMQYCVSCAIHS 635
            + GRNK GRGHVK +RC NC K  PKDKAIKR  +RNIVE AAVRD+ EA VY  Y LPK Y K+ YCVSCAIH+
Sbjct:    7 SNGRNKKGRGHVKPVRCVNCSKSIPKDKAIKRMAIRNIVEAAAVRDLSEASVYPEYALPKTYNKLHYCVSCAIHA 81          
BLAST of CB304573 vs. ExPASy Swiss-Prot
Match: RS26A_YEAST (40S ribosomal protein S26-A OS=Saccharomyces cerevisiae GN=RPS26A PE=1 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 7.208e-24
Identity = 51/75 (68.00%), Postives = 57/75 (76.00%), Query Frame = -3
Query:  411 NGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDGYTLPKLYAKMQYCVSCAIHS 635
            + GRNK GRGHVK +RC NC K  PKDKAIKR  +RNIVE AAVRD+ EA VY  Y LPK Y K+ YCVSCAIH+
Sbjct:    7 SNGRNKKGRGHVKPVRCVNCSKSIPKDKAIKRMAIRNIVEAAAVRDLSEASVYPEYALPKTYNKLHYCVSCAIHA 81          
BLAST of CB304573 vs. ExPASy Swiss-Prot
Match: RS26_DICDI (40S ribosomal protein S26 OS=Dictyostelium discoideum GN=rps26 PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.097e-23
Identity = 47/78 (60.26%), Postives = 60/78 (76.92%), Query Frame = -3
Query:  408 NGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD--GYTLPKLYAKMQYCVSCAIHSH 635
            N GR+KHGRG V +IRC+NC +C PKDKA+KRF +R IVE AAV+D+ +  V++  GY  P+ Y K QYC+SCAIHSH
Sbjct:    7 NHGRSKHGRGSVPYIRCTNCARCVPKDKAVKRFYIRPIVENAAVKDISDQGVFNVKGYKFPRTYVKSQYCISCAIHSH 84          
BLAST of CB304573 vs. ExPASy Swiss-Prot
Match: RS26_OXYNO (40S ribosomal protein S26 OS=Oxytricha nova GN=RPS26 PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 6.981e-19
Identity = 41/77 (53.25%), Postives = 55/77 (71.43%), Query Frame = -3
Query:  411 NGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVY--DGYTLPKLYAKMQYCVSCAIHS 635
            N GRNK  +GH   +RC+NCG+   KDKAIKRF  RN+V+ ++ RD+QE   Y    +T+PK+Y K+ YCVSCAIH+
Sbjct:    7 NNGRNKKNKGHADTVRCTNCGRVVSKDKAIKRFQQRNMVDASSKRDIQENYAYAQSDFTMPKIYVKLSYCVSCAIHA 83          
BLAST of CB304573 vs. ExPASy Swiss-Prot
Match: RS26_ENCCU (40S ribosomal protein S26 OS=Encephalitozoon cuniculi GN=RPS26 PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.232e-15
Identity = 35/75 (46.67%), Postives = 52/75 (69.33%), Query Frame = -3
Query:  411 NGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDGYTLPKLYAKMQYCVSCAIHS 635
            N GR K  RG    I+C  CG   PKDKAIKRF +++++EQA+  D+++A +YD + +P++  K Q+CVSCA H+
Sbjct:    4 NHGRGKKNRGSAGSIQCDKCGSVTPKDKAIKRFRIQSLIEQASFDDLKQATIYDVFEVPRMGYKSQFCVSCACHA 78          
The following BLAST results are available for this feature:
BLAST of CB304573 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
RS26A_SCHPO4.515e-2666.6740S ribosomal protein S26-A OS=Schizosaccharomyces... [more]
RS26L_HUMAN4.226e-2465.33Putative 40S ribosomal protein S26-like 1 OS=Homo ... [more]
RS26B_YEAST7.208e-2468.0040S ribosomal protein S26-B OS=Saccharomyces cerev... [more]
RS26A_YEAST7.208e-2468.0040S ribosomal protein S26-A OS=Saccharomyces cerev... [more]
RS26_DICDI2.097e-2360.2640S ribosomal protein S26 OS=Dictyostelium discoid... [more]
RS26_OXYNO6.981e-1953.2540S ribosomal protein S26 OS=Oxytricha nova GN=RPS... [more]
RS26_ENCCU1.232e-1546.6740S ribosomal protein S26 OS=Encephalitozoon cunic... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionFLAVEDO0001_IVaR_G08 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IVaR_G08 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304573 ID=CB304573; Name=CB304573; organism=Citrus sinensis; type=EST; length=637bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTCGCAAAACAGAACAACAACAA
TTTTACTTCAATCACTCCATCAAAATTCTCTAGGGTTTTGATTCAAACTT
GCGACAGTAAACAGTTCTCCGATGCACGACAACAAAACACAAAACTAACA
TAAAAGTTTGCAGGGCTCTAATTAAACAGACCCACATATCTGATACCACC
ACATAAAAATCCCAAAAGCCTCAAAGGACCAAAAGCACCGACAGCAAAAA
GCTTTCAAGCACGAGCAGCAGCTGGAGCTCCAGCTGGACCACCAGCACGT
GGGCCTTGACCAAGAGCACCACCAGCCTTTGGCACATCATCCCTGCGCCT
GAAGCGTTGTGGGGGCTCACGGATCCTCCTGTTAGTACGGGAACGAACTC
TCACCACATGAGAGTGGATCGCACACGAGACGCAGTACTGCATCTTAGCA
TATAACTTAGGAAGAGTGTAACCGTCATAAACACACGCCTCCTGAACATC
CCTAACAGCAGCTTGCTCAACAATGTTCCTCACCAAAAACCTCTTAATCG
CCTTGTCCTTAGGGCAGCATTTGCCGCAGTTAGAGCAGCGGATGAACTTG
ACATGGCCACGGCCGTGCTTGTTCCTTCCTCCGTTCC
back to top