CB304581

Overview
NameCB304581
Unique NameCB304581
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length683
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB304581 vs. ExPASy Swiss-Prot
Match: RL25_SPHAL (50S ribosomal protein L25 OS=Sphingopyxis alaskensis GN=rplY PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.617e-11
Identity = 29/89 (32.58%), Postives = 56/89 (62.92%), Query Frame = -1
Query:  414 EKVRVLPRKVHLPSGTDAPLNVTFLRAPPEALLKIDVPLVFRGDDVTPGLRKGGYLNTIKRTVKFLCPADIVPPYIDVDLSELDVEQKI 680
            +++R LP+ V      D P++  FLR   +A +++ VP+VF+ ++ +PGL++GG LN ++  ++ +C AD +P  I +D++  D+   I
Sbjct:   71 KQIRTLPKDVAFHPVKDRPIHADFLRIAKDATVQVAVPVVFQNEEKSPGLKRGGVLNIVRHELELVCDADNIPDEIAIDVTGFDIGDSI 159          
BLAST of CB304581 vs. ExPASy Swiss-Prot
Match: RL25_OCHA4 (50S ribosomal protein L25 OS=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) GN=rplY PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.112e-11
Identity = 28/96 (29.17%), Postives = 60/96 (62.50%), Query Frame = -1
Query:  393 EKVRVLPRKVHLPSGTDAPLNVTFLRAPPEALLKIDVPLVFRGDDVTPGLRKGGYLNTIKRTVKFLCPADIVPPYIDVDLSELDVEQKILAGDLKV 680
            +K++VLP+   L    D P +V FLR   ++++ ++VP+ F+ ++  PG+++GG LN ++  V+ + PA+ +P  ++ DL+ L++   +    +K+
Sbjct:   71 KKIQVLPKDYQLDPVRDFPQHVDFLRVSAKSVVHVNVPVHFKNEEAAPGIKRGGVLNIVRHDVELIVPANAIPEALEFDLTGLEIGDSVHISAIKL 166          
BLAST of CB304581 vs. ExPASy Swiss-Prot
Match: RL25_CAUCR (50S ribosomal protein L25 OS=Caulobacter crescentus GN=rplY PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.112e-11
Identity = 35/113 (30.97%), Postives = 60/113 (53.10%), Query Frame = -1
Query:  342 EKVRVLPRKVHLPSGTDAPLNVTFLRAPPEALLKIDVPLVFRGDDVTPGLRKGGYLNTIKRTVKFLCPADIVPPYIDVDLSELDVEQKILAGDLKVHPALKLFRSKDEPVCKI 680
            EK  V+ + V     TD P++    R     L+KI+VP+ F+  + + GL+KGG L  I+ TV+  CPAD +P  + +DL+  D+   I   ++K+   +K    +D  +  +
Sbjct:   70 EKQSVIAKAVQFHPVTDEPVHFDLYRVDEHQLIKIEVPVHFKNHETSVGLKKGGTLEVIRHTVELACPADKIPEELVIDLAGHDIGDVIRISEVKLPEGVKPAMDRDFVIANV 182          
BLAST of CB304581 vs. ExPASy Swiss-Prot
Match: RL25_CAUCN (50S ribosomal protein L25 OS=Caulobacter crescentus (strain NA1000 / CB15N) GN=rplY PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.112e-11
Identity = 35/113 (30.97%), Postives = 60/113 (53.10%), Query Frame = -1
Query:  342 EKVRVLPRKVHLPSGTDAPLNVTFLRAPPEALLKIDVPLVFRGDDVTPGLRKGGYLNTIKRTVKFLCPADIVPPYIDVDLSELDVEQKILAGDLKVHPALKLFRSKDEPVCKI 680
            EK  V+ + V     TD P++    R     L+KI+VP+ F+  + + GL+KGG L  I+ TV+  CPAD +P  + +DL+  D+   I   ++K+   +K    +D  +  +
Sbjct:   70 EKQSVIAKAVQFHPVTDEPVHFDLYRVDEHQLIKIEVPVHFKNHETSVGLKKGGTLEVIRHTVELACPADKIPEELVIDLAGHDIGDVIRISEVKLPEGVKPAMDRDFVIANV 182          
BLAST of CB304581 vs. ExPASy Swiss-Prot
Match: RL25_NOVAD (50S ribosomal protein L25 OS=Novosphingobium aromaticivorans (strain DSM 12444) GN=rplY PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.602e-11
Identity = 31/101 (30.69%), Postives = 59/101 (58.42%), Query Frame = -1
Query:  378 EKVRVLPRKVHLPSGTDAPLNVTFLRAPPEALLKIDVPLVFRGDDVTPGLRKGGYLNTIKRTVKFLCPADIVPPYIDVDLSELDVEQKILAGDLKVHPALK 680
            + VR LP+ V     TD P +  FLR   ++++ ++VP++F  ++ +PGL+KGG LN ++  ++ +C  D +P  I +D++  +V   I    +K+   +K
Sbjct:   71 QTVRTLPKDVAFHPVTDRPEHADFLRVSKDSVVHVNVPVIFANEEKSPGLKKGGVLNIVRHELELVCAPDAIPDDIVIDVAGYEVGDSIHISAVKLPAGVK 171          
The following BLAST results are available for this feature:
BLAST of CB304581 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
RL25_SPHAL1.617e-1132.5850S ribosomal protein L25 OS=Sphingopyxis alaskens... [more]
RL25_OCHA42.112e-1129.1750S ribosomal protein L25 OS=Ochrobactrum anthropi... [more]
RL25_CAUCR2.112e-1130.9750S ribosomal protein L25 OS=Caulobacter crescentu... [more]
RL25_CAUCN2.112e-1130.9750S ribosomal protein L25 OS=Caulobacter crescentu... [more]
RL25_NOVAD3.602e-1130.6950S ribosomal protein L25 OS=Novosphingobium aroma... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0001_IVaR_H07 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IVaR_H07 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304581 ID=CB304581; Name=CB304581; organism=Citrus sinensis; type=EST; length=683bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCGAAAGTAAAAAATAATCAC
TAACTGGATTAATGAGGTACACTCTTAATCGGAATCTGCTCCGCTTAACC
ACAAACCCACTGCAGCCTATTCAAATGGGATAAAAAAAAATGATGGTTGG
AGAGATAAAACTAAATTCGCAATTCCTAATCTGGTATTACAAAATTATGA
CTGTGTGATGAAAAAATGGGACCTCACATCTTCATATACTCATAGTCCGG
TTAAACCTGGAGATTGATTCATTAACCATAGTTTCAAGAATTGCTGAGGT
ACTTATTTTGATTTCTTTTGATCAAAAACCCTGCCTCCCGCAATCTTACA
GACAGGCTCGTCCTTTGACCGAAAAAGCTTTAATGCTGGATGAACCTTGA
GGTCTCCTGCTAAAATTTTCTGTTCCACATCCAACTCACTCAAATCGACA
TCAATATACGGAGGGACAATGTCTGCTGGACAAAGGAACTTAACAGTCCT
CTTGATAGTATTCAAATAACCCCCTTTTCTTAGACCAGGGGTCACATCAT
CTCCTCTAAAGACAAGTGGAACATCAATCTTCAGCAAAGCTTCTGGAGGT
GCCCTTAAGAAGGTCACATTAAGTGGTGCATCCGTGCCAGAAGGTAGATG
TACCTTTCTGGGCAGGACCCGGACTTTTTCAAT
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