CB304609

Overview
NameCB304609
Unique NameCB304609
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length606
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB304609_ssr169 microsatellite CB304609_ssr169:169..186. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig6849 contig Csv1_Contig6849:451..1058. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304609 vs. ExPASy Swiss-Prot
Match: HS16A_ORYSJ (16.9 kDa class I heat shock protein 1 OS=Oryza sativa subsp. japonica GN=HSP16.9A PE=1 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 2.610e-28
Identity = 63/103 (61.17%), Postives = 77/103 (74.76%), Query Frame = -1
Query:  262 ERAPQAHVFKADLPGLRXXXXXXXXXEDRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXKAIEISG 570
            +  P++HVFKADLPG++         E  +L ISG+RSKE+E+KNDKWHRVERSSG+F+RRFRLP+NAKV+QVKA +ENGVLTVT           KAIEISG
Sbjct:   48 KETPESHVFKADLPGVKKEEVKVEVEEGNVLVISGQRSKEKEDKNDKWHRVERSSGQFMRRFRLPENAKVDQVKAGLENGVLTVTVPKAEVKKPEVKAIEISG 150          
BLAST of CB304609 vs. ExPASy Swiss-Prot
Match: HSP17_ARATH (17.4 kDa class I heat shock protein OS=Arabidopsis thaliana GN=HSP17.4A PE=1 SV=2)

HSP 1 Score: 124.79 bits (312), Expect = 3.409e-28
Identity = 63/100 (63.00%), Postives = 75/100 (75.00%), Query Frame = -1
Query:  262 PQAHVFKADLPGLRXXXXXXXXXEDRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXKAIEISG 561
            P+AHVFKAD+PGL+         +  ILQISGERS E EEK+D WHRVERSSGKF+RRFRLP+NAKVE+VKASMENGVL+VT           K+++ISG
Sbjct:   57 PEAHVFKADVPGLKKEEVKVEVEDGNILQISGERSSENEEKSDTWHRVERSSGKFMRRFRLPENAKVEEVKASMENGVLSVTVPKVQESKPEVKSVDISG 156          
BLAST of CB304609 vs. ExPASy Swiss-Prot
Match: HSP15_SOYBN (17.6 kDa class I heat shock protein OS=Glycine max GN=HSP17.6-L PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 5.815e-28
Identity = 63/99 (63.64%), Postives = 74/99 (74.75%), Query Frame = -1
Query:  262 QAHVFKADLPGLRXXXXXXXXXEDRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXKAIEISG 558
            +AHV KAD+PGL+         +DR+LQISGER+ E+E+KND WHRV+RSSGKF+RRFRLP+NAKVEQVKA MENGVLTVT           K IEISG
Sbjct:   56 EAHVLKADIPGLKKEEVKVQIEDDRVLQISGERNVEKEDKNDTWHRVDRSSGKFMRRFRLPENAKVEQVKACMENGVLTVTIPKEEVKKSDVKPIEISG 154          
BLAST of CB304609 vs. ExPASy Swiss-Prot
Match: HS16A_WHEAT (16.9 kDa class I heat shock protein 1 OS=Triticum aestivum GN=hsp16.9A PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 7.594e-28
Identity = 61/103 (59.22%), Postives = 76/103 (73.79%), Query Frame = -1
Query:  262 ERAPQAHVFKADLPGLRXXXXXXXXXEDRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXKAIEISG 570
            +  P+AHVFK DLPG++         +  +L +SGERS+E+E+KNDKWHRVERSSGKF+RRFRLP++AKVE+VKA +ENGVLTVT           KAIEISG
Sbjct:   49 KETPEAHVFKVDLPGVKKEEVKVEVEDGNVLVVSGERSREKEDKNDKWHRVERSSGKFVRRFRLPEDAKVEEVKAGLENGVLTVTVPKAEVKKPEVKAIEISG 151          
BLAST of CB304609 vs. ExPASy Swiss-Prot
Match: HS17B_ARATH (17.6 kDa class I heat shock protein 2 OS=Arabidopsis thaliana GN=HSP17.6B PE=2 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 8.396e-27
Identity = 61/100 (61.00%), Postives = 74/100 (74.00%), Query Frame = -1
Query:  262 PQAHVFKADLPGLRXXXXXXXXXEDRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXKAIEISG 561
            P+AHVFKADLPGL+         ED +L+ISGER  E+E+KND WHRVERSSG+F RRFRLP+N K++QVKA+MENGVLTVT           K+I+ISG
Sbjct:   54 PEAHVFKADLPGLKKEEVKVEIEEDSVLKISGERHVEKEDKNDTWHRVERSSGQFTRRFRLPENVKMDQVKAAMENGVLTVTVPKAETKKADVKSIQISG 153          
BLAST of CB304609 vs. ExPASy Swiss-Prot
Match: HS16B_WHEAT (16.9 kDa class I heat shock protein 2 OS=Triticum aestivum GN=hsp16.9B PE=1 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 8.396e-27
Identity = 60/103 (58.25%), Postives = 76/103 (73.79%), Query Frame = -1
Query:  262 ERAPQAHVFKADLPGLRXXXXXXXXXEDRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXKAIEISG 570
            +  P+AHVFKADLPG++         +  +L +SGER+KE+E+KNDKWHRVERSSGKF+RRFRL ++AKVE+VKA +ENGVLTVT           KAI+ISG
Sbjct:   49 KETPEAHVFKADLPGVKKEEVKVEVEDGNVLVVSGERTKEKEDKNDKWHRVERSSGKFVRRFRLLEDAKVEEVKAGLENGVLTVTVPKAEVKKPEVKAIQISG 151          
BLAST of CB304609 vs. ExPASy Swiss-Prot
Match: HSP11_CHERU (18.3 kDa class I heat shock protein OS=Chenopodium rubrum GN=HSP18 PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 3.191e-26
Identity = 54/85 (63.53%), Postives = 70/85 (82.35%), Query Frame = -1
Query:  316 ERAPQAHVFKADLPGLRXXXXXXXXXEDRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 570
            +  P+AHVFKADLPG++         +  +L+ISG+R++E+EEKND WHRVERSSG+F+R+FRLP+NAKV+QVKA MENGVLTVT
Sbjct:   60 KETPEAHVFKADLPGVKKEEVKVEVEDGNVLRISGQRAREKEEKNDTWHRVERSSGQFMRKFRLPENAKVDQVKAGMENGVLTVT 144          
BLAST of CB304609 vs. ExPASy Swiss-Prot
Match: HSP11_HELAN (17.6 kDa class I heat shock protein OS=Helianthus annuus GN=HSP17.6 PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 4.167e-26
Identity = 55/84 (65.48%), Postives = 68/84 (80.95%), Query Frame = -1
Query:  319 ERAPQAHVFKADLPGLRXXXXXXXXXEDRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTV 570
            +  P+AHV KADLPG++         + R+LQISGER +EQEEK+D WHRVERSSGKF+RRFRLP+NAK+++VKA MENGVLTV
Sbjct:   50 KETPEAHVLKADLPGMKKEEVKVEVEDGRVLQISGERCREQEEKDDTWHRVERSSGKFIRRFRLPENAKMDEVKAMMENGVLTV 133          
BLAST of CB304609 vs. ExPASy Swiss-Prot
Match: HS17A_ARATH (17.6 kDa class I heat shock protein 1 OS=Arabidopsis thaliana GN=HSP17.6A PE=1 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 6.653e-24
Identity = 53/81 (65.43%), Postives = 64/81 (79.01%), Query Frame = -1
Query:  316 QAHVFKADLPGLRXXXXXXXXXEDRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 558
            +AHVFKADLPG++         +D +L+ISGER  E+EEK D WHRVERSSG F R+FRLP+N K++QVKASMENGVLTVT
Sbjct:   55 EAHVFKADLPGMKKEEVKVEIEDDSVLKISGERHVEKEEKQDTWHRVERSSGGFSRKFRLPENVKMDQVKASMENGVLTVT 135          
BLAST of CB304609 vs. ExPASy Swiss-Prot
Match: HS178_ARATH (17.8 kDa class I heat shock protein OS=Arabidopsis thaliana GN=HSP17.8 PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 6.653e-24
Identity = 52/81 (64.20%), Postives = 65/81 (80.25%), Query Frame = -1
Query:  316 QAHVFKADLPGLRXXXXXXXXXEDRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 558
            +AHVFKADLPG++         +D +L+ISGER  E+EEK D WHRVERSSG+F R+F+LP+N K++QVKASMENGVLTVT
Sbjct:   57 EAHVFKADLPGMKKEEVKVEIEDDSVLKISGERHVEKEEKQDTWHRVERSSGQFSRKFKLPENVKMDQVKASMENGVLTVT 137          
The following BLAST results are available for this feature:
BLAST of CB304609 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 53
Match NameE-valueIdentityDescription
HS16A_ORYSJ2.610e-2861.1716.9 kDa class I heat shock protein 1 OS=Oryza sat... [more]
HSP17_ARATH3.409e-2863.0017.4 kDa class I heat shock protein OS=Arabidopsis... [more]
HSP15_SOYBN5.815e-2863.6417.6 kDa class I heat shock protein OS=Glycine max... [more]
HS16A_WHEAT7.594e-2859.2216.9 kDa class I heat shock protein 1 OS=Triticum ... [more]
HS17B_ARATH8.396e-2761.0017.6 kDa class I heat shock protein 2 OS=Arabidops... [more]
HS16B_WHEAT8.396e-2758.2516.9 kDa class I heat shock protein 2 OS=Triticum ... [more]
HSP11_CHERU3.191e-2663.5318.3 kDa class I heat shock protein OS=Chenopodium... [more]
HSP11_HELAN4.167e-2665.4817.6 kDa class I heat shock protein OS=Helianthus ... [more]
HS17A_ARATH6.653e-2465.4317.6 kDa class I heat shock protein 1 OS=Arabidops... [more]
HS178_ARATH6.653e-2464.2017.8 kDa class I heat shock protein OS=Arabidopsis... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0001_IaR_D02 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IaR_D02 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304609 ID=CB304609; Name=CB304609; organism=Citrus sinensis; type=EST; length=606bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTAGCAAAATATATTTTATTGCA
TCACACTTTTATCATTTAAAAAACTAGTTACAACGCTTGAGACTGGCTCC
TGAAGCTCTTGCAAACACACAAACATAATCACATCAAATTAAACAGGGGG
GAAGGGAAGCTCTTGCAAACACACACACACACACACAAGGGCTTTGCTTT
CGTACCAAATTTATTAGCAAACCAAAGACACAATCTTGAAAACATTTACA
CTTATCACTTAGCCAGAGATCTCAATGGCCTTAACTTCAGGTTTCTTCTC
CTCCTGTTTAGGAACAGTCACTGTGAGCACACCATTCTCCATGCTGGCCT
TAACCTGCTCCACCTTAGCATTGTCGGGCAACCTGAACCTCCTCAGGAAC
TTGCCACTGCTCCTCTCGACGCGATGCCACTTGTCATTCTTCTCTTCCTG
CTCCTTGCTCCTCTCCCCGCTTATCTGCAGAATCCTGTCCTCTTCAACCT
CAACTTTCACTTCTTCTTTCCTCAGCCCTGGAAGATCAGCCTTGAATACA
TGAGCCTGAGGAGCTCTTTCCAGCAATTCTTGCATTGGCGAATTGGGATG
TTTCCC
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