CB304609

Overview
NameCB304609
Unique NameCB304609
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length606
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB304609 vs. ExPASy Swiss-Prot
Match: HSP18_ORYSJ (18.0 kDa class II heat shock protein OS=Oryza sativa subsp. japonica GN=HSP18.0 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 6.901e-13
Identity = 39/86 (45.35%), Postives = 58/86 (67.44%), Query Frame = -1
Query:  316 PQAHVFKADLPGLRXXXXXXXXXEDRILQISGERSK----EQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 561
            P A+ F  D+PGL+         E+R+L ISGER +    E++E++ K+ R+ER  GKF+R+F LPDNA V+++ A  ++GVLTVT
Sbjct:   61 PGAYAFVVDMPGLKSSDIKVQVEEERLLVISGERRRGGGEEEKEESCKYLRMERRMGKFMRKFVLPDNADVDKISAVCQDGVLTVT 146          
BLAST of CB304609 vs. ExPASy Swiss-Prot
Match: HSP21_PEA (17.1 kDa class II heat shock protein OS=Pisum sativum GN=HSP17.7 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 9.013e-13
Identity = 33/82 (40.24%), Postives = 55/82 (67.07%), Query Frame = -1
Query:  316 PQAHVFKADLPGLRXXXXXXXXXEDRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 561
            P ++VF  D+PG++         ++ +L ISGER +E+E++  K+ ++ER  GK +R+F LP+NA +E + A  ++GVLTVT
Sbjct:   51 PNSYVFMVDMPGVKSGDIKVQVEDENVLLISGERKREEEKEGVKYLKMERRIGKLMRKFVLPENANIEAISAISQDGVLTVT 132          
BLAST of CB304609 vs. ExPASy Swiss-Prot
Match: HSP21_IPONI (17.2 kDa class II heat shock protein OS=Ipomoea nil GN=SHSP-1 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 9.013e-13
Identity = 38/83 (45.78%), Postives = 53/83 (63.86%), Query Frame = -1
Query:  316 PQAHVFKADLPGLRXXXXXXXXXEDRILQISGERSKEQEEKND-KWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 561
            P ++VF  D+PGL+          D +L ISGER +E EEK   K+ R+ER  GK +R+F LP+NA  E++ A  ++GVLTVT
Sbjct:   53 PNSYVFIIDMPGLKSGDIKVQVDGDNVLSISGERKREAEEKEGAKYVRMERRVGKLMRKFVLPENANKEKITAVCQDGVLTVT 135          
BLAST of CB304609 vs. ExPASy Swiss-Prot
Match: HS219_ORYSJ (21.9 kDa heat shock protein OS=Oryza sativa subsp. japonica GN=HSP21.9 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.177e-12
Identity = 40/93 (43.01%), Postives = 60/93 (64.52%), Query Frame = -1
Query:  316 ERAPQAHVFKADLPGLRXXXXXXXXXE-DRILQISGER-----SKEQEEKND--KWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 570
            +  P+AHV   D+PG+R         E  R+L++SGER     ++E+E + D  +WHR ER++G+F RRFR+P  A V +V A +++GVLTVT
Sbjct:   77 KETPEAHVVTVDVPGVRRGDVRVEVDEASRVLRVSGERRRAGAAEEEEGERDGVRWHRAERAAGRFWRRFRMPPGADVGRVAARLDDGVLTVT 169          
BLAST of CB304609 vs. ExPASy Swiss-Prot
Match: HS17B_ORYSJ (17.9 kDa heat shock protein 2 OS=Oryza sativa subsp. japonica GN=HSP17.9B PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.177e-12
Identity = 39/82 (47.56%), Postives = 54/82 (65.85%), Query Frame = -1
Query:  316 QAHVFKADLP-GLRXXXXXXXXXEDRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 558
            +A+VF+ADLP G++         E  +L I+GERS  +EEK  + H +ERS   F  RF LPD+A V+ V+ASM+ G+LTVT
Sbjct:   50 EAYVFRADLPAGVKKEEVRVEVDEGNVLVITGERSVRREEKGQRSHHIERSCATFFGRFHLPDDAVVDLVRASMDGGMLTVT 131          
BLAST of CB304609 vs. ExPASy Swiss-Prot
Match: HSP22_IPONI (18.8 kDa class II heat shock protein OS=Ipomoea nil GN=SHSP-2 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.008e-12
Identity = 35/84 (41.67%), Postives = 57/84 (67.86%), Query Frame = -1
Query:  316 PQAHVFKADLPGLRXXXXXXXXXEDRILQISGERSKEQEEKND--KWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 561
            P ++VF AD+PG++         +D +L +SGER++ ++++ D  K+ R+ER  GKF+R+F LP+NA VE + A  ++GVL VT
Sbjct:   64 PNSYVFIADMPGVKAAEIKVQVEDDNVLVVSGERTEREKDEKDGVKYLRMERRVGKFMRKFVLPENANVEAINAVYQDGVLQVT 147          
BLAST of CB304609 vs. ExPASy Swiss-Prot
Match: HSP21_MAIZE (17.5 kDa class II heat shock protein OS=Zea mays PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.622e-12
Identity = 37/86 (43.02%), Postives = 56/86 (65.12%), Query Frame = -1
Query:  316 LERAPQAHVFKADLPGLRXXXXXXXXXEDRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 573
            ++  P A+ F  D+PGL          ++R+L ISGER +E+ E + K+ R+ER  GKF+R+F LPDNA ++++ A   +GVLTVT
Sbjct:   57 VKELPGAYAFVVDMPGLGTGDIKVQVEDERVLVISGERRREERE-DAKYLRMERRMGKFMRKFVLPDNADMDKISAVCRDGVLTVT 141          
BLAST of CB304609 vs. ExPASy Swiss-Prot
Match: HSP23_MAIZE (17.0 kDa class II heat shock protein OS=Zea mays GN=HSP18 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.473e-12
Identity = 38/80 (47.50%), Postives = 53/80 (66.25%), Query Frame = -1
Query:  316 AHVFKADLPGLRXXXXXXXXXEDRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 555
            A+ F  D+PGL          ++R+L ISGER +E+ E + K+ R+ER  GKF+R+F LPDNA V++V A   +GVLTVT
Sbjct:   56 AYAFVVDMPGLSTGDIRVQVEDERVLVISGERRREERE-DAKYLRMERRMGKFMRKFVLPDNADVDKVAAVCRDGVLTVT 134          
BLAST of CB304609 vs. ExPASy Swiss-Prot
Match: HS177_ARATH (17.7 kDa class II heat shock protein OS=Arabidopsis thaliana GN=HSP17.7 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.473e-12
Identity = 33/83 (39.76%), Postives = 54/83 (65.06%), Query Frame = -1
Query:  316 PQAHVFKADLPGLRXXXXXXXXXEDRILQISGERSKEQEEKND-KWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 561
            P A+VF  D+PG++          + +L +SG+R ++ +E    K+ R+ER  GKF+R+F+LPDNA +E++ A+  +GVL VT
Sbjct:   54 PDAYVFAVDMPGIKGDEIQVQIENENVLVVSGKRQRDNKENEGVKFVRMERRMGKFMRKFQLPDNADLEKISAACNDGVLKVT 136          
BLAST of CB304609 vs. ExPASy Swiss-Prot
Match: HSP21_SOYBN (17.9 kDa class II heat shock protein OS=Glycine max GN=HSP17.9-D PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 5.842e-12
Identity = 32/82 (39.02%), Postives = 54/82 (65.85%), Query Frame = -1
Query:  316 PQAHVFKADLPGLRXXXXXXXXXEDRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 561
            P ++VF+ D+PGL+         +D +L I GER +++E++  K+ R+ER  GK +R+F LP+NA  + + A  ++GVL+VT
Sbjct:   58 PNSYVFEIDMPGLKSGDIKVQVEDDNLLLICGERKRDEEKEGAKYLRMERRVGKLMRKFVLPENANTDAISAVCQDGVLSVT 139          
The following BLAST results are available for this feature:
BLAST of CB304609 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 53
Match NameE-valueIdentityDescription
HSP18_ORYSJ6.901e-1345.3518.0 kDa class II heat shock protein OS=Oryza sati... [more]
HSP21_PEA9.013e-1340.2417.1 kDa class II heat shock protein OS=Pisum sati... [more]
HSP21_IPONI9.013e-1345.7817.2 kDa class II heat shock protein OS=Ipomoea ni... [more]
HS219_ORYSJ1.177e-1243.0121.9 kDa heat shock protein OS=Oryza sativa subsp.... [more]
HS17B_ORYSJ1.177e-1247.5617.9 kDa heat shock protein 2 OS=Oryza sativa subs... [more]
HSP22_IPONI2.008e-1241.6718.8 kDa class II heat shock protein OS=Ipomoea ni... [more]
HSP21_MAIZE2.622e-1243.0217.5 kDa class II heat shock protein OS=Zea mays P... [more]
HSP23_MAIZE4.473e-1247.5017.0 kDa class II heat shock protein OS=Zea mays G... [more]
HS177_ARATH4.473e-1239.7617.7 kDa class II heat shock protein OS=Arabidopsi... [more]
HSP21_SOYBN5.842e-1239.0217.9 kDa class II heat shock protein OS=Glycine ma... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0001_IaR_D02 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IaR_D02 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304609 ID=CB304609; Name=CB304609; organism=Citrus sinensis; type=EST; length=606bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTAGCAAAATATATTTTATTGCA
TCACACTTTTATCATTTAAAAAACTAGTTACAACGCTTGAGACTGGCTCC
TGAAGCTCTTGCAAACACACAAACATAATCACATCAAATTAAACAGGGGG
GAAGGGAAGCTCTTGCAAACACACACACACACACACAAGGGCTTTGCTTT
CGTACCAAATTTATTAGCAAACCAAAGACACAATCTTGAAAACATTTACA
CTTATCACTTAGCCAGAGATCTCAATGGCCTTAACTTCAGGTTTCTTCTC
CTCCTGTTTAGGAACAGTCACTGTGAGCACACCATTCTCCATGCTGGCCT
TAACCTGCTCCACCTTAGCATTGTCGGGCAACCTGAACCTCCTCAGGAAC
TTGCCACTGCTCCTCTCGACGCGATGCCACTTGTCATTCTTCTCTTCCTG
CTCCTTGCTCCTCTCCCCGCTTATCTGCAGAATCCTGTCCTCTTCAACCT
CAACTTTCACTTCTTCTTTCCTCAGCCCTGGAAGATCAGCCTTGAATACA
TGAGCCTGAGGAGCTCTTTCCAGCAATTCTTGCATTGGCGAATTGGGATG
TTTCCC
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