CB304617

Overview
NameCB304617
Unique NameCB304617
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length627
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB304617 vs. ExPASy Swiss-Prot
Match: CLPP_STAA1 (ATP-dependent Clp protease proteolytic subunit OS=Staphylococcus aureus (strain Mu3 / ATCC 700698) GN=clpP PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 6.187e-20
Identity = 49/114 (42.98%), Postives = 70/114 (61.40%), Query Frame = -1
Query:  286 DTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRIIRP 627
            DT+Q +K  V T C+G A  +  FLLA G KG R A+P + + +  P G A+GQA +I   A+ +L+ R+ + + LS +TGQ  EKI KD  R     ++EA EYGLID ++ P
Sbjct:   79 DTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQGQATEIEIAANHILKTREKLNRILSERTGQSIEKIQKDTDRDNFLTAEEAKEYGLIDEVMVP 192          
BLAST of CB304617 vs. ExPASy Swiss-Prot
Match: CLPP_NATTJ (ATP-dependent Clp protease proteolytic subunit OS=Natranaerobius thermophilus (strain ATCC BAA-1301 / DSM 18059 / JW/NM-WN-LF) GN=clpP PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 6.187e-20
Identity = 49/115 (42.61%), Postives = 72/115 (62.61%), Query Frame = -1
Query:  283 DTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRIIRPP 627
            DTMQ ++S V T CVG A  +   LLA G +G R  +P SRI L  P G A+GQA D+   A E+++ ++ + + L+  TGQP E+I+KD  R     S+EA +YG+ID +++ P
Sbjct:   79 DTMQYIRSDVSTICVGMAASMGAVLLAAGNEGKRFCLPNSRIMLHQPMGGAQGQAADVEIHAREIMKTKERLNQILAHHTGQPVEQISKDTDRDFFMSSEEAQKYGVIDDVLKRP 193          
BLAST of CB304617 vs. ExPASy Swiss-Prot
Match: CLPP_FRATW (ATP-dependent Clp protease proteolytic subunit OS=Francisella tularensis subsp. tularensis (strain WY96-3418) GN=clpP PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 6.187e-20
Identity = 51/112 (45.54%), Postives = 65/112 (58.04%), Query Frame = -1
Query:  292 DTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 627
            DTMQ +K  V T C+G A  +   LLAGG KG R ++P S+I +  P G  RGQA DI   A  +LR++D + K L+  TGQ  E I KD  R     + EA  YGLID +I
Sbjct:   82 DTMQFIKPDVSTICIGLAASMGSLLLAGGAKGKRYSLPSSQIMIHQPLGGFRGQASDIEIHAKNILRIKDRLNKVLAHHTGQDLETIVKDTDRDNFMMADEAKAYGLIDHVI 193          
BLAST of CB304617 vs. ExPASy Swiss-Prot
Match: CLPP_FRATT (ATP-dependent Clp protease proteolytic subunit OS=Francisella tularensis subsp. tularensis GN=clpP PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 6.187e-20
Identity = 51/112 (45.54%), Postives = 65/112 (58.04%), Query Frame = -1
Query:  292 DTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 627
            DTMQ +K  V T C+G A  +   LLAGG KG R ++P S+I +  P G  RGQA DI   A  +LR++D + K L+  TGQ  E I KD  R     + EA  YGLID +I
Sbjct:   82 DTMQFIKPDVSTICIGLAASMGSLLLAGGAKGKRYSLPSSQIMIHQPLGGFRGQASDIEIHAKNILRIKDRLNKVLAHHTGQDLETIVKDTDRDNFMMADEAKAYGLIDHVI 193          
BLAST of CB304617 vs. ExPASy Swiss-Prot
Match: CLPP_FRATO (ATP-dependent Clp protease proteolytic subunit OS=Francisella tularensis subsp. holarctica (strain OSU18) GN=clpP PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 6.187e-20
Identity = 51/112 (45.54%), Postives = 65/112 (58.04%), Query Frame = -1
Query:  292 DTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 627
            DTMQ +K  V T C+G A  +   LLAGG KG R ++P S+I +  P G  RGQA DI   A  +LR++D + K L+  TGQ  E I KD  R     + EA  YGLID +I
Sbjct:   82 DTMQFIKPDVSTICIGLAASMGSLLLAGGAKGKRYSLPSSQIMIHQPLGGFRGQASDIEIHAKNILRIKDRLNKVLAHHTGQDLETIVKDTDRDNFMMADEAKAYGLIDHVI 193          
BLAST of CB304617 vs. ExPASy Swiss-Prot
Match: CLPP_FRATN (ATP-dependent Clp protease proteolytic subunit OS=Francisella tularensis subsp. novicida (strain U112) GN=clpP PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 6.187e-20
Identity = 51/112 (45.54%), Postives = 65/112 (58.04%), Query Frame = -1
Query:  292 DTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 627
            DTMQ +K  V T C+G A  +   LLAGG KG R ++P S+I +  P G  RGQA DI   A  +LR++D + K L+  TGQ  E I KD  R     + EA  YGLID +I
Sbjct:   82 DTMQFIKPDVSTICIGLAASMGSLLLAGGAKGKRYSLPSSQIMIHQPLGGFRGQASDIEIHAKNILRIKDRLNKVLAHHTGQDLETIVKDTDRDNFMMADEAKAYGLIDHVI 193          
BLAST of CB304617 vs. ExPASy Swiss-Prot
Match: CLPP_FRATM (ATP-dependent Clp protease proteolytic subunit OS=Francisella tularensis subsp. mediasiatica (strain FSC147) GN=clpP PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 6.187e-20
Identity = 51/112 (45.54%), Postives = 65/112 (58.04%), Query Frame = -1
Query:  292 DTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 627
            DTMQ +K  V T C+G A  +   LLAGG KG R ++P S+I +  P G  RGQA DI   A  +LR++D + K L+  TGQ  E I KD  R     + EA  YGLID +I
Sbjct:   82 DTMQFIKPDVSTICIGLAASMGSLLLAGGAKGKRYSLPSSQIMIHQPLGGFRGQASDIEIHAKNILRIKDRLNKVLAHHTGQDLETIVKDTDRDNFMMADEAKAYGLIDHVI 193          
BLAST of CB304617 vs. ExPASy Swiss-Prot
Match: CLPP_FRATH (ATP-dependent Clp protease proteolytic subunit OS=Francisella tularensis subsp. holarctica (strain LVS) GN=clpP PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 6.187e-20
Identity = 51/112 (45.54%), Postives = 65/112 (58.04%), Query Frame = -1
Query:  292 DTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 627
            DTMQ +K  V T C+G A  +   LLAGG KG R ++P S+I +  P G  RGQA DI   A  +LR++D + K L+  TGQ  E I KD  R     + EA  YGLID +I
Sbjct:   82 DTMQFIKPDVSTICIGLAASMGSLLLAGGAKGKRYSLPSSQIMIHQPLGGFRGQASDIEIHAKNILRIKDRLNKVLAHHTGQDLETIVKDTDRDNFMMADEAKAYGLIDHVI 193          
BLAST of CB304617 vs. ExPASy Swiss-Prot
Match: CLPP_FRATF (ATP-dependent Clp protease proteolytic subunit OS=Francisella tularensis subsp. holarctica (strain FTNF002-00 / FTA) GN=clpP PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 6.187e-20
Identity = 51/112 (45.54%), Postives = 65/112 (58.04%), Query Frame = -1
Query:  292 DTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 627
            DTMQ +K  V T C+G A  +   LLAGG KG R ++P S+I +  P G  RGQA DI   A  +LR++D + K L+  TGQ  E I KD  R     + EA  YGLID +I
Sbjct:   82 DTMQFIKPDVSTICIGLAASMGSLLLAGGAKGKRYSLPSSQIMIHQPLGGFRGQASDIEIHAKNILRIKDRLNKVLAHHTGQDLETIVKDTDRDNFMMADEAKAYGLIDHVI 193          
BLAST of CB304617 vs. ExPASy Swiss-Prot
Match: CLPP_FRAT1 (ATP-dependent Clp protease proteolytic subunit OS=Francisella tularensis subsp. tularensis (strain FSC 198) GN=clpP PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 6.187e-20
Identity = 51/112 (45.54%), Postives = 65/112 (58.04%), Query Frame = -1
Query:  292 DTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 627
            DTMQ +K  V T C+G A  +   LLAGG KG R ++P S+I +  P G  RGQA DI   A  +LR++D + K L+  TGQ  E I KD  R     + EA  YGLID +I
Sbjct:   82 DTMQFIKPDVSTICIGLAASMGSLLLAGGAKGKRYSLPSSQIMIHQPLGGFRGQASDIEIHAKNILRIKDRLNKVLAHHTGQDLETIVKDTDRDNFMMADEAKAYGLIDHVI 193          
The following BLAST results are available for this feature:
BLAST of CB304617 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CLPP_STAA16.187e-2042.98ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_NATTJ6.187e-2042.61ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_FRATW6.187e-2045.54ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_FRATT6.187e-2045.54ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_FRATO6.187e-2045.54ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_FRATN6.187e-2045.54ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_FRATM6.187e-2045.54ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_FRATH6.187e-2045.54ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_FRATF6.187e-2045.54ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_FRAT16.187e-2045.54ATP-dependent Clp protease proteolytic subunit OS=... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0001_IaR_E03 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IaR_E03 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304617 ID=CB304617; Name=CB304617; organism=Citrus sinensis; type=EST; length=627bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCGAGAGAAAATGTAATGCCT
CTCAAAACAGGCAACCATCAAATTCTTTGTAGGTTTTATTAGATGTAAAT
TACACATTTCAGAGCAAACTTCTACAAGAATAATTCGATTGAGTAGTTAA
TTTTACAAGTAGATGAATGAAATTACGAAAGATAAAATATTTGATGACTT
CAGTCTACTCAGGGGAGAATCAATGAATACACTAACCAAGACCTGTTCCA
GCATCTTTACGAGGCATATCTTCCTTAATACGAGGTGGCCTGATTATACG
ATCTATCAGCCCATATTCAAGAGCCTCCTGGGAACCAAAGCGTTTAATCC
TACTTAAATCCTTCGTAATCTTCTCAAAGGGCTGACCTGTTTTCCTAGAC
AACTCCTTGAAAATGTAATCTCTGACTCTAAGAAGCTCATCTGCTTCATT
ACGAATGTCATCAGCCTGACCGCGAGCTGCACCAGCTGGAGAGTCTAAAG
CAATTCTCGAAAGAGGCATTGCAGACCGATTACCCTTTTCTCCACCTGCT
AGAAGAAACCCTGCTAAATGATAGGCAAAGCCCACACAGTGAGTGCCAAC
AGGACTCTTCAAGCTCTGCATAGTGTC
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