CB304617

Overview
NameCB304617
Unique NameCB304617
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length627
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CB304617 vs. ExPASy Swiss-Prot
Match: CLPP_BURCM (ATP-dependent Clp protease proteolytic subunit OS=Burkholderia ambifaria (strain ATCC BAA-244 / AMMD) GN=clpP PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 6.187e-20
Identity = 49/112 (43.75%), Postives = 70/112 (62.50%), Query Frame = -1 
Query:  292 DTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 627
            DTMQ +K  V T C+G A  +  FLLA G KG R A+P SR+ +  P G ARGQA DI  +A E+L +++ +   L++ TGQ  E+I +D  R     S++A  YGLID+++
Sbjct:  102 DTMQFIKPDVSTLCMGLAASMGAFLLASGAKGKRFALPNSRVMIHQPLGGARGQASDIEIQAREILYLKERLNNLLAQHTGQDVERIARDTDRDNFMSSEDAKAYGLIDQVL 213
[Close]
BLAST of CB304617 vs. ExPASy Swiss-Prot
Match: CLPP_BURCH (ATP-dependent Clp protease proteolytic subunit OS=Burkholderia cenocepacia (strain HI2424) GN=clpP PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 6.187e-20
Identity = 49/112 (43.75%), Postives = 70/112 (62.50%), Query Frame = -1 
Query:  292 DTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 627
            DTMQ +K  V T C+G A  +  FLLA G KG R A+P SR+ +  P G ARGQA DI  +A E+L +++ +   L++ TGQ  E+I +D  R     S++A  YGLID+++
Sbjct:  102 DTMQFIKPDVSTLCMGLAASMGAFLLASGAKGKRFALPNSRVMIHQPLGGARGQASDIEIQAREILYLKERLNNLLAQHTGQDVERIARDTDRDNFMSSEDAKAYGLIDQVL 213
[Close]
BLAST of CB304617 vs. ExPASy Swiss-Prot
Match: CLPP_BURCA (ATP-dependent Clp protease proteolytic subunit OS=Burkholderia cenocepacia (strain AU 1054) GN=clpP PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 6.187e-20
Identity = 49/112 (43.75%), Postives = 70/112 (62.50%), Query Frame = -1 
Query:  292 DTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 627
            DTMQ +K  V T C+G A  +  FLLA G KG R A+P SR+ +  P G ARGQA DI  +A E+L +++ +   L++ TGQ  E+I +D  R     S++A  YGLID+++
Sbjct:  102 DTMQFIKPDVSTLCMGLAASMGAFLLASGAKGKRFALPNSRVMIHQPLGGARGQASDIEIQAREILYLKERLNNLLAQHTGQDVERIARDTDRDNFMSSEDAKAYGLIDQVL 213
[Close]
BLAST of CB304617 vs. ExPASy Swiss-Prot
Match: CLPP_ACTSZ (ATP-dependent Clp protease proteolytic subunit OS=Actinobacillus succinogenes (strain ATCC 55618 / 130Z) GN=clpP PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 6.187e-20
Identity = 48/112 (42.86%), Postives = 70/112 (62.50%), Query Frame = -1 
Query:  292 DTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 627
            DTMQ +K  V T C+G A  +  FLLAGG  G R+A+P +R+ +  P G  RGQA DI+  A E+L+++  + + L+  +GQP E+I KD  R     ++EA  YGLID ++
Sbjct:   79 DTMQFIKPDVRTLCIGQACSMGAFLLAGGAAGKRAALPNARVMIHQPLGGFRGQASDIQIHAQEILKIKHTLNERLAFHSGQPLEQIEKDTDRDNFMSAEEAQNYGLIDSVL 190
[Close]
BLAST of CB304617 vs. ExPASy Swiss-Prot
Match: CLPP2_MYXXA (ATP-dependent Clp protease proteolytic subunit 2 OS=Myxococcus xanthus GN=clpP2 PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 6.187e-20
Identity = 51/117 (43.59%), Postives = 69/117 (58.97%), Query Frame = -1 
Query:  277 DTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRIIRPPRI 627
            DTMQ +K PV T CVG A  +   LL  G KG R A+P SRI +  P G  RGQA DI  +A E+LR++  + + + + TGQ  E++ KD  R    G+ EA  YG+ID I  P ++
Sbjct:   81 DTMQYVKCPVSTICVGQAASMGAVLLLAGAKGKRYALPSSRIMIHQPLGGVRGQATDIEIQAKEILRMKAKLNELIVKHTGQSIERVEKDTDRDYFMGASEAKAYGIIDEIQNPRKV 197
[Close]
BLAST of CB304617 vs. ExPASy Swiss-Prot
Match: CLPP1_MYXXD (ATP-dependent Clp protease proteolytic subunit 1 OS=Myxococcus xanthus (strain DK 1622) GN=clpP1 PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 6.187e-20
Identity = 51/117 (43.59%), Postives = 69/117 (58.97%), Query Frame = -1 
Query:  277 DTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRIIRPPRI 627
            DTMQ +K PV T CVG A  +   LL  G KG R A+P SRI +  P G  RGQA DI  +A E+LR++  + + + + TGQ  E++ KD  R    G+ EA  YG+ID I  P ++
Sbjct:   81 DTMQYVKCPVSTICVGQAASMGAVLLLAGAKGKRYALPSSRIMIHQPLGGVRGQATDIEIQAKEILRMKAKLNELIVKHTGQSIERVEKDTDRDYFMGASEAKAYGIIDEIQNPRKV 197
[Close]
BLAST of CB304617 vs. ExPASy Swiss-Prot
Match: CLPP_SHEB9 (ATP-dependent Clp protease proteolytic subunit OS=Shewanella baltica (strain OS195) GN=clpP PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 8.080e-20
Identity = 47/112 (41.96%), Postives = 69/112 (61.61%), Query Frame = -1 
Query:  292 DTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 627
            DTMQ +K  V T C+G A  +  FLLAGGEKG R  +P SR+ +  P G  +GQA DI   A E+L +++ + + L+  TGQP E + +D  R     + +A+EYGL+D ++
Sbjct:   87 DTMQFIKPNVSTVCIGQAASMGAFLLAGGEKGKRHCLPNSRVMIHQPLGGFQGQASDIAIHAKEILGIKNKLNQMLAEHTGQPLEVVERDTDRDNFMSATQAVEYGLVDSVM 198
[Close]
BLAST of CB304617 vs. ExPASy Swiss-Prot
Match: CLPP_SHEB8 (ATP-dependent Clp protease proteolytic subunit OS=Shewanella baltica (strain OS185) GN=clpP PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 8.080e-20
Identity = 47/112 (41.96%), Postives = 69/112 (61.61%), Query Frame = -1 
Query:  292 DTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 627
            DTMQ +K  V T C+G A  +  FLLAGGEKG R  +P SR+ +  P G  +GQA DI   A E+L +++ + + L+  TGQP E + +D  R     + +A+EYGL+D ++
Sbjct:   87 DTMQFIKPNVSTVCIGQAASMGAFLLAGGEKGKRHCLPNSRVMIHQPLGGFQGQASDIAIHAKEILGIKNKLNQMLAEHTGQPLEVVERDTDRDNFMSATQAVEYGLVDSVM 198
[Close]
BLAST of CB304617 vs. ExPASy Swiss-Prot
Match: CLPP_SHEB5 (ATP-dependent Clp protease proteolytic subunit OS=Shewanella baltica (strain OS155 / ATCC BAA-1091) GN=clpP PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 8.080e-20
Identity = 47/112 (41.96%), Postives = 69/112 (61.61%), Query Frame = -1 
Query:  292 DTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 627
            DTMQ +K  V T C+G A  +  FLLAGGEKG R  +P SR+ +  P G  +GQA DI   A E+L +++ + + L+  TGQP E + +D  R     + +A+EYGL+D ++
Sbjct:   87 DTMQFIKPNVSTVCIGQAASMGAFLLAGGEKGKRHCLPNSRVMIHQPLGGFQGQASDIAIHAKEILGIKNKLNQMLAEHTGQPLEVVERDTDRDNFMSATQAVEYGLVDSVM 198
[Close]
BLAST of CB304617 vs. ExPASy Swiss-Prot
Match: CLPP_SHEB2 (ATP-dependent Clp protease proteolytic subunit OS=Shewanella baltica (strain OS223) GN=clpP PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 8.080e-20
Identity = 47/112 (41.96%), Postives = 69/112 (61.61%), Query Frame = -1 
Query:  292 DTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 627
            DTMQ +K  V T C+G A  +  FLLAGGEKG R  +P SR+ +  P G  +GQA DI   A E+L +++ + + L+  TGQP E + +D  R     + +A+EYGL+D ++
Sbjct:   87 DTMQFIKPNVSTVCIGQAASMGAFLLAGGEKGKRHCLPNSRVMIHQPLGGFQGQASDIAIHAKEILGIKNKLNQMLAEHTGQPLEVVERDTDRDNFMSATQAVEYGLVDSVM 198
The following BLAST results are available for this feature:
BLAST of CB304617 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CLPP_BURCM6.187e-2043.75ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_BURCH6.187e-2043.75ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_BURCA6.187e-2043.75ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_ACTSZ6.187e-2042.86ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP2_MYXXA6.187e-2043.59ATP-dependent Clp protease proteolytic subunit 2 O... [more]
CLPP1_MYXXD6.187e-2043.59ATP-dependent Clp protease proteolytic subunit 1 O... [more]
CLPP_SHEB98.080e-2041.96ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_SHEB88.080e-2041.96ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_SHEB58.080e-2041.96ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_SHEB28.080e-2041.96ATP-dependent Clp protease proteolytic subunit OS=... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0001_IaR_E03 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IaR_E03 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304617 ID=CB304617; Name=CB304617; organism=Citrus sinensis; type=EST; length=627bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCGAGAGAAAATGTAATGCCT
CTCAAAACAGGCAACCATCAAATTCTTTGTAGGTTTTATTAGATGTAAAT
TACACATTTCAGAGCAAACTTCTACAAGAATAATTCGATTGAGTAGTTAA
TTTTACAAGTAGATGAATGAAATTACGAAAGATAAAATATTTGATGACTT
CAGTCTACTCAGGGGAGAATCAATGAATACACTAACCAAGACCTGTTCCA
GCATCTTTACGAGGCATATCTTCCTTAATACGAGGTGGCCTGATTATACG
ATCTATCAGCCCATATTCAAGAGCCTCCTGGGAACCAAAGCGTTTAATCC
TACTTAAATCCTTCGTAATCTTCTCAAAGGGCTGACCTGTTTTCCTAGAC
AACTCCTTGAAAATGTAATCTCTGACTCTAAGAAGCTCATCTGCTTCATT
ACGAATGTCATCAGCCTGACCGCGAGCTGCACCAGCTGGAGAGTCTAAAG
CAATTCTCGAAAGAGGCATTGCAGACCGATTACCCTTTTCTCCACCTGCT
AGAAGAAACCCTGCTAAATGATAGGCAAAGCCCACACAGTGAGTGCCAAC
AGGACTCTTCAAGCTCTGCATAGTGTC
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