CB304617

Overview
NameCB304617
Unique NameCB304617
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length627
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6243 contig Csv1_Contig6243:486..1085. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304617 vs. ExPASy Swiss-Prot
Match: CLPP1_PROMP (ATP-dependent Clp protease proteolytic subunit 1 OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=clpP1 PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 8.633e-22
Identity = 55/118 (46.61%), Postives = 73/118 (61.86%), Query Frame = -1
Query:  274 DTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRIIRPPRIK 627
            DTMQ +K  + T CVG A  +  FLLA G KG RS++  SRI +  P G ARGQA DIR +ADE+L +++ +  ELS +TG+  E I  D  R      QEA+EYGLID ++    +K
Sbjct:   77 DTMQHVKPDIHTVCVGLAASMGAFLLAAGTKGKRSSLRHSRIMIHQPLGGARGQASDIRIQADEILYLKERLNTELSERTGKELETIKGDTDRDFYMSPQEAVEYGLIDLVLDKKPVK 194          
BLAST of CB304617 vs. ExPASy Swiss-Prot
Match: CLPP1_PROM9 (ATP-dependent Clp protease proteolytic subunit 1 OS=Prochlorococcus marinus (strain MIT 9312) GN=clpP1 PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 8.633e-22
Identity = 54/118 (45.76%), Postives = 74/118 (62.71%), Query Frame = -1
Query:  274 DTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRIIRPPRIK 627
            DTMQ +K  + T CVG A  +  FLLA G KG RS++  SRI +  P G ARGQA DIR +ADE+L +++ +  ELS +TG+ +E I +D  R       EA+EYGLID ++    +K
Sbjct:   77 DTMQHVKPDIHTVCVGLAASMGAFLLAAGTKGKRSSLRHSRIMIHQPLGGARGQASDIRIQADEILFLKERLNTELSERTGKDYETIKEDTDRDFYMSPSEAVEYGLIDLVLDKKPVK 194          
BLAST of CB304617 vs. ExPASy Swiss-Prot
Match: CLPP_VARPS (ATP-dependent Clp protease proteolytic subunit OS=Variovorax paradoxus (strain S110) GN=clpP PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.127e-21
Identity = 51/112 (45.54%), Postives = 71/112 (63.39%), Query Frame = -1
Query:  292 DTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 627
            DTMQ +K  V T C+GFA  +  FLLA GEKG R ++P S+I +    G ARGQA DI   A ++LR +D + + L+ +TGQP EK+  D  R     + EA +YGL+D++I
Sbjct:   87 DTMQFIKPDVSTMCIGFAASMGAFLLAAGEKGKRFSLPNSKIMIHQVLGGARGQATDIEIHARDILRTKDQMNRILAERTGQPLEKVKSDTERDYFLTADEAKDYGLVDQVI 198          
BLAST of CB304617 vs. ExPASy Swiss-Prot
Match: CLPP_CHLCH (ATP-dependent Clp protease proteolytic subunit OS=Chlorobium chlorochromatii (strain CaD3) GN=clpP PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.127e-21
Identity = 55/122 (45.08%), Postives = 77/122 (63.11%), Query Frame = -1
Query:  268 DTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII--RPPRIKED 627
            DTMQ ++  + T CVG A  +  FLLA G KG R+++P SRI +  P+G A+GQ  DI  +A E+ ++R  + + L++ TGQP EK+ +D  R +    QEALEYGLID I   RP   K+D
Sbjct:  104 DTMQYIRPEISTVCVGMAASMGAFLLASGNKGKRASLPHSRIMIHQPSGGAQGQETDIVIQAREIEKIRRLLEELLAKHTGQPVEKVREDSERDRWMNPQEALEYGLIDAIFEKRPTPEKKD 225          
BLAST of CB304617 vs. ExPASy Swiss-Prot
Match: CLPP_BACA2 (ATP-dependent Clp protease proteolytic subunit OS=Bacillus amyloliquefaciens (strain FZB42) GN=clpP PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.473e-21
Identity = 52/112 (46.43%), Postives = 70/112 (62.50%), Query Frame = -1
Query:  292 DTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 627
            DTMQ +K  V T C+G A  +  FLLA GEKG R A+P S + +  P G A+GQA +I   A  +L +RD + K L+ +TGQP E I +D  R     + EALEYGLID+++
Sbjct:   79 DTMQFIKPKVSTICIGMAASMGAFLLAAGEKGKRYALPNSEVMIHQPLGGAQGQATEIEIAAKRILLLRDKLNKVLAERTGQPLEVIERDTDRDNFKSADEALEYGLIDKVL 190          
BLAST of CB304617 vs. ExPASy Swiss-Prot
Match: CLPP3_SYNE7 (ATP-dependent Clp protease proteolytic subunit 3 OS=Synechococcus elongatus (strain PCC 7942) GN=clpP3 PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.473e-21
Identity = 55/113 (48.67%), Postives = 72/113 (63.72%), Query Frame = -1
Query:  292 DTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSP-AGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 627
            DTMQ +KSPV T C+G A  +  FLL  G KG R A+P SRI +  P  G  R QA DI  EA E+LR++  + + ++ +TGQP EKI KD  R     ++EA EYGLID++I
Sbjct:   82 DTMQYIKSPVITICLGLAASMGAFLLCAGSKGKRLALPHSRIMIHQPLGGTGRRQASDIEIEAKEILRIKKLLNQIMADRTGQPLEKIEKDTDRDYFMSAEEAREYGLIDQVI 194          
BLAST of CB304617 vs. ExPASy Swiss-Prot
Match: CLPP2_SYNP6 (ATP-dependent Clp protease proteolytic subunit 2 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=clpP2 PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.473e-21
Identity = 55/113 (48.67%), Postives = 72/113 (63.72%), Query Frame = -1
Query:  292 DTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSP-AGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 627
            DTMQ +KSPV T C+G A  +  FLL  G KG R A+P SRI +  P  G  R QA DI  EA E+LR++  + + ++ +TGQP EKI KD  R     ++EA EYGLID++I
Sbjct:   82 DTMQYIKSPVITICLGLAASMGAFLLCAGSKGKRLALPHSRIMIHQPLGGTGRRQASDIEIEAKEILRIKKLLNQIMADRTGQPLEKIEKDTDRDYFMSAEEAREYGLIDQVI 194          
BLAST of CB304617 vs. ExPASy Swiss-Prot
Match: CLPP1_SYNS9 (ATP-dependent Clp protease proteolytic subunit 1 OS=Synechococcus sp. (strain CC9902) GN=clpP1 PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.473e-21
Identity = 54/112 (48.21%), Postives = 70/112 (62.50%), Query Frame = -1
Query:  292 DTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 627
            DTMQ +K  V T CVG A  +  FLL  G KG RS++  SRI +  P G A GQA DIR +ADE+L ++D +  ELS +TGQP ++I +D  R       EA+ YGLID +I
Sbjct:   77 DTMQHIKPDVQTVCVGLAASMGAFLLCAGTKGKRSSLQHSRIMIHQPLGGASGQASDIRIQADEILYLKDRLNTELSDRTGQPLDRIQEDTDRDFFMSPGEAVSYGLIDSVI 188          
BLAST of CB304617 vs. ExPASy Swiss-Prot
Match: CLPP_THET8 (ATP-dependent Clp protease proteolytic subunit OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=clpP PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.923e-21
Identity = 49/112 (43.75%), Postives = 73/112 (65.18%), Query Frame = -1
Query:  292 DTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 627
            DTMQ +++PV T  +G A  +A  +LA GEKG R A+P +++ +  P G  RG A DI  +A E+L+ +  + + L++ TGQP EK+ KD  R     +QEALEYGLID+++
Sbjct:   78 DTMQFVRAPVSTIVIGMAASMAAVILAAGEKGRRYALPHAKVMIHQPWGGVRGTASDIAIQAQEILKAKKLLNEILAKHTGQPLEKVEKDTDRDYYLSAQEALEYGLIDQVV 189          
BLAST of CB304617 vs. ExPASy Swiss-Prot
Match: CLPP_THET2 (ATP-dependent Clp protease proteolytic subunit OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=clpP PE=3 SV=2)

HSP 1 Score: 102.449 bits (254), Expect = 1.923e-21
Identity = 49/112 (43.75%), Postives = 73/112 (65.18%), Query Frame = -1
Query:  292 DTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 627
            DTMQ +++PV T  +G A  +A  +LA GEKG R A+P +++ +  P G  RG A DI  +A E+L+ +  + + L++ TGQP EK+ KD  R     +QEALEYGLID+++
Sbjct:   78 DTMQFVRAPVSTIVIGMAASMAAVILAAGEKGRRYALPHAKVMIHQPWGGVRGTASDIAIQAQEILKAKKLLNEILAKHTGQPLEKVEKDTDRDYYLSAQEALEYGLIDQVV 189          
The following BLAST results are available for this feature:
BLAST of CB304617 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CLPP1_PROMP8.633e-2246.61ATP-dependent Clp protease proteolytic subunit 1 O... [more]
CLPP1_PROM98.633e-2245.76ATP-dependent Clp protease proteolytic subunit 1 O... [more]
CLPP_VARPS1.127e-2145.54ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_CHLCH1.127e-2145.08ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_BACA21.473e-2146.43ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP3_SYNE71.473e-2148.67ATP-dependent Clp protease proteolytic subunit 3 O... [more]
CLPP2_SYNP61.473e-2148.67ATP-dependent Clp protease proteolytic subunit 2 O... [more]
CLPP1_SYNS91.473e-2148.21ATP-dependent Clp protease proteolytic subunit 1 O... [more]
CLPP_THET81.923e-2143.75ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_THET21.923e-2143.75ATP-dependent Clp protease proteolytic subunit OS=... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0001_IaR_E03 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IaR_E03 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304617 ID=CB304617; Name=CB304617; organism=Citrus sinensis; type=EST; length=627bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCGAGAGAAAATGTAATGCCT
CTCAAAACAGGCAACCATCAAATTCTTTGTAGGTTTTATTAGATGTAAAT
TACACATTTCAGAGCAAACTTCTACAAGAATAATTCGATTGAGTAGTTAA
TTTTACAAGTAGATGAATGAAATTACGAAAGATAAAATATTTGATGACTT
CAGTCTACTCAGGGGAGAATCAATGAATACACTAACCAAGACCTGTTCCA
GCATCTTTACGAGGCATATCTTCCTTAATACGAGGTGGCCTGATTATACG
ATCTATCAGCCCATATTCAAGAGCCTCCTGGGAACCAAAGCGTTTAATCC
TACTTAAATCCTTCGTAATCTTCTCAAAGGGCTGACCTGTTTTCCTAGAC
AACTCCTTGAAAATGTAATCTCTGACTCTAAGAAGCTCATCTGCTTCATT
ACGAATGTCATCAGCCTGACCGCGAGCTGCACCAGCTGGAGAGTCTAAAG
CAATTCTCGAAAGAGGCATTGCAGACCGATTACCCTTTTCTCCACCTGCT
AGAAGAAACCCTGCTAAATGATAGGCAAAGCCCACACAGTGAGTGCCAAC
AGGACTCTTCAAGCTCTGCATAGTGTC
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